EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPSIG00000017149 (Gene tree)
Gene ID: 102448011
Gene Symbol: LSM7
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Minus strand
Length: 104696 bases
Position: chrJH209348.1:828616-933311
Accession: 20470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000019302	LSM	PF01423.22	3.8e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000019392	LSM7-201	342	-	ENSPSIP00000019302	114 (aa)	-	K7GG91

Gene Model

Click here to download ENSPSIG00000017149's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03018	RNA degradation	KEGG
pss03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000017149's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000017149	LSM7	89	98.020	ENSG00000130332	LSM7	100	97.959	Homo_sapiens
ENSPSIG00000017149	LSM7	82	96.809	ENSAPOG00000015573	lsm7	81	96.809	Acanthochromis_polyacanthus
ENSPSIG00000017149	LSM7	89	97.030	ENSAMEG00000005484	LSM7	98	97.030	Ailuropoda_melanoleuca
ENSPSIG00000017149	LSM7	85	95.876	ENSACIG00000006498	lsm7	71	96.629	Amphilophus_citrinellus
ENSPSIG00000017149	LSM7	89	97.030	ENSAOCG00000001077	lsm7	92	97.030	Amphiprion_ocellaris
ENSPSIG00000017149	LSM7	89	97.030	ENSAPEG00000000694	lsm7	98	97.030	Amphiprion_percula
ENSPSIG00000017149	LSM7	89	97.030	ENSAPEG00000024447	lsm7	92	97.030	Amphiprion_percula
ENSPSIG00000017149	LSM7	89	97.030	ENSATEG00000008557	lsm7	98	97.030	Anabas_testudineus
ENSPSIG00000017149	LSM7	89	89.109	ENSANAG00000022222	-	98	89.109	Aotus_nancymaae
ENSPSIG00000017149	LSM7	89	98.020	ENSANAG00000037196	-	98	98.020	Aotus_nancymaae
ENSPSIG00000017149	LSM7	89	96.040	ENSACLG00000021021	lsm7	98	96.040	Astatotilapia_calliptera
ENSPSIG00000017149	LSM7	89	97.030	ENSAMXG00000037622	lsm7	98	97.030	Astyanax_mexicanus
ENSPSIG00000017149	LSM7	89	98.020	ENSBTAG00000004521	LSM7	98	98.020	Bos_taurus
ENSPSIG00000017149	LSM7	88	58.000	WBGene00003081	lsm-7	88	57.609	Caenorhabditis_elegans
ENSPSIG00000017149	LSM7	89	97.030	ENSCAFG00000019409	LSM7	98	97.030	Canis_familiaris
ENSPSIG00000017149	LSM7	89	97.030	ENSCAFG00020018168	LSM7	74	97.030	Canis_lupus_dingo
ENSPSIG00000017149	LSM7	89	98.020	ENSCHIG00000023663	LSM7	98	98.020	Capra_hircus
ENSPSIG00000017149	LSM7	62	97.183	ENSCAPG00000014534	LSM7	100	97.183	Cavia_aperea
ENSPSIG00000017149	LSM7	89	98.020	ENSCPOG00000014025	LSM7	100	98.020	Cavia_porcellus
ENSPSIG00000017149	LSM7	89	98.020	ENSCCAG00000035456	LSM7	99	98.020	Cebus_capucinus
ENSPSIG00000017149	LSM7	89	98.020	ENSCATG00000023543	LSM7	98	98.020	Cercocebus_atys
ENSPSIG00000017149	LSM7	89	98.020	ENSCLAG00000011635	LSM7	98	98.020	Chinchilla_lanigera
ENSPSIG00000017149	LSM7	89	98.020	ENSCSAG00000011599	LSM7	98	98.020	Chlorocebus_sabaeus
ENSPSIG00000017149	LSM7	63	97.222	ENSCPBG00000021317	LSM7	77	97.222	Chrysemys_picta_bellii
ENSPSIG00000017149	LSM7	84	81.250	ENSCING00000022134	-	91	82.222	Ciona_intestinalis
ENSPSIG00000017149	LSM7	89	98.020	ENSCANG00000035525	LSM7	98	98.020	Colobus_angolensis_palliatus
ENSPSIG00000017149	LSM7	89	97.030	ENSCGRG00001000807	-	98	97.030	Cricetulus_griseus_chok1gshd
ENSPSIG00000017149	LSM7	79	87.778	ENSCGRG00001016005	-	92	87.778	Cricetulus_griseus_chok1gshd
ENSPSIG00000017149	LSM7	89	97.030	ENSCGRG00000014355	-	97	97.030	Cricetulus_griseus_crigri
ENSPSIG00000017149	LSM7	79	87.778	ENSCGRG00000006821	-	92	87.778	Cricetulus_griseus_crigri
ENSPSIG00000017149	LSM7	89	97.030	ENSCSEG00000014900	lsm7	84	97.030	Cynoglossus_semilaevis
ENSPSIG00000017149	LSM7	89	98.020	ENSCVAG00000021091	lsm7	94	98.020	Cyprinodon_variegatus
ENSPSIG00000017149	LSM7	89	97.030	ENSDARG00000058328	lsm7	98	97.030	Danio_rerio
ENSPSIG00000017149	LSM7	89	96.040	ENSDORG00000024460	Lsm7	99	96.040	Dipodomys_ordii
ENSPSIG00000017149	LSM7	85	75.510	FBgn0261068	LSm7	83	75.824	Drosophila_melanogaster
ENSPSIG00000017149	LSM7	89	95.050	ENSETEG00000012788	LSM7	99	95.050	Echinops_telfairi
ENSPSIG00000017149	LSM7	89	85.149	ENSEBUG00000016992	lsm7	89	87.097	Eptatretus_burgeri
ENSPSIG00000017149	LSM7	73	60.241	ENSEBUG00000010470	-	79	60.241	Eptatretus_burgeri
ENSPSIG00000017149	LSM7	89	94.059	ENSECAG00000001440	LSM7	65	94.059	Equus_caballus
ENSPSIG00000017149	LSM7	89	97.030	ENSFCAG00000003445	LSM7	98	97.030	Felis_catus
ENSPSIG00000017149	LSM7	89	99.010	ENSFALG00000011912	LSM7	100	99.010	Ficedula_albicollis
ENSPSIG00000017149	LSM7	84	97.917	ENSFDAG00000007661	LSM7	100	97.917	Fukomys_damarensis
ENSPSIG00000017149	LSM7	89	98.020	ENSFHEG00000006349	lsm7	90	98.020	Fundulus_heteroclitus
ENSPSIG00000017149	LSM7	89	95.050	ENSGMOG00000013320	lsm7	98	95.050	Gadus_morhua
ENSPSIG00000017149	LSM7	89	98.020	ENSGAFG00000013902	lsm7	98	98.020	Gambusia_affinis
ENSPSIG00000017149	LSM7	89	96.040	ENSGACG00000010390	lsm7	98	96.040	Gasterosteus_aculeatus
ENSPSIG00000017149	LSM7	89	98.020	ENSGGOG00000010172	LSM7	98	98.020	Gorilla_gorilla
ENSPSIG00000017149	LSM7	89	96.040	ENSHBUG00000004616	lsm7	98	96.040	Haplochromis_burtoni
ENSPSIG00000017149	LSM7	89	98.020	ENSHGLG00000010587	LSM7	98	98.020	Heterocephalus_glaber_female
ENSPSIG00000017149	LSM7	89	98.020	ENSHGLG00100000852	LSM7	98	98.020	Heterocephalus_glaber_male
ENSPSIG00000017149	LSM7	89	96.040	ENSHCOG00000020252	lsm7	100	96.040	Hippocampus_comes
ENSPSIG00000017149	LSM7	89	97.030	ENSIPUG00000024724	lsm7	98	97.030	Ictalurus_punctatus
ENSPSIG00000017149	LSM7	89	98.020	ENSSTOG00000028372	LSM7	99	98.020	Ictidomys_tridecemlineatus
ENSPSIG00000017149	LSM7	88	98.000	ENSJJAG00000001936	Lsm7	97	98.000	Jaculus_jaculus
ENSPSIG00000017149	LSM7	89	98.020	ENSKMAG00000022151	lsm7	98	98.020	Kryptolebias_marmoratus
ENSPSIG00000017149	LSM7	89	97.030	ENSLBEG00000005203	lsm7	98	97.030	Labrus_bergylta
ENSPSIG00000017149	LSM7	89	99.010	ENSLACG00000015700	LSM7	98	99.010	Latimeria_chalumnae
ENSPSIG00000017149	LSM7	89	98.020	ENSLOCG00000004356	lsm7	98	98.020	Lepisosteus_oculatus
ENSPSIG00000017149	LSM7	89	98.020	ENSLAFG00000029302	LSM7	98	98.020	Loxodonta_africana
ENSPSIG00000017149	LSM7	89	98.020	ENSMFAG00000044572	LSM7	98	98.020	Macaca_fascicularis
ENSPSIG00000017149	LSM7	89	98.020	ENSMMUG00000000452	LSM7	99	98.020	Macaca_mulatta
ENSPSIG00000017149	LSM7	89	98.020	ENSMNEG00000004393	LSM7	98	98.020	Macaca_nemestrina
ENSPSIG00000017149	LSM7	89	98.020	ENSMLEG00000030852	LSM7	100	98.020	Mandrillus_leucophaeus
ENSPSIG00000017149	LSM7	89	96.040	ENSMAMG00000005410	lsm7	98	96.040	Mastacembelus_armatus
ENSPSIG00000017149	LSM7	89	96.040	ENSMZEG00005028055	lsm7	98	96.040	Maylandia_zebra
ENSPSIG00000017149	LSM7	89	100.000	ENSMGAG00000000750	LSM7	87	100.000	Meleagris_gallopavo
ENSPSIG00000017149	LSM7	89	97.030	ENSMAUG00000009276	Lsm7	98	97.030	Mesocricetus_auratus
ENSPSIG00000017149	LSM7	89	98.020	ENSMICG00000028619	-	98	98.020	Microcebus_murinus
ENSPSIG00000017149	LSM7	89	98.020	ENSMICG00000009988	-	98	98.020	Microcebus_murinus
ENSPSIG00000017149	LSM7	89	97.030	ENSMOCG00000016925	Lsm7	98	97.030	Microtus_ochrogaster
ENSPSIG00000017149	LSM7	89	97.030	ENSMMOG00000019645	lsm7	96	97.030	Mola_mola
ENSPSIG00000017149	LSM7	89	99.010	ENSMODG00000004722	LSM7	98	99.010	Monodelphis_domestica
ENSPSIG00000017149	LSM7	89	96.040	ENSMALG00000014511	lsm7	78	96.040	Monopterus_albus
ENSPSIG00000017149	LSM7	88	97.000	MGP_CAROLIEiJ_G0015607	Lsm7	97	97.000	Mus_caroli
ENSPSIG00000017149	LSM7	88	97.000	ENSMUSG00000035215	Lsm7	97	97.000	Mus_musculus
ENSPSIG00000017149	LSM7	88	97.000	MGP_PahariEiJ_G0031020	Lsm7	97	97.000	Mus_pahari
ENSPSIG00000017149	LSM7	88	97.000	MGP_SPRETEiJ_G0016425	Lsm7	97	97.000	Mus_spretus
ENSPSIG00000017149	LSM7	89	91.089	ENSMLUG00000024002	-	85	92.391	Myotis_lucifugus
ENSPSIG00000017149	LSM7	89	97.030	ENSMLUG00000013097	-	98	97.030	Myotis_lucifugus
ENSPSIG00000017149	LSM7	89	96.040	ENSNGAG00000021637	Lsm7	98	96.040	Nannospalax_galili
ENSPSIG00000017149	LSM7	89	96.040	ENSNBRG00000015770	lsm7	87	96.040	Neolamprologus_brichardi
ENSPSIG00000017149	LSM7	99	86.726	ENSNBRG00000001237	-	90	86.726	Neolamprologus_brichardi
ENSPSIG00000017149	LSM7	89	98.020	ENSNLEG00000002265	LSM7	98	98.020	Nomascus_leucogenys
ENSPSIG00000017149	LSM7	89	91.089	ENSODEG00000018769	-	90	90.323	Octodon_degus
ENSPSIG00000017149	LSM7	89	98.020	ENSODEG00000013590	-	98	98.020	Octodon_degus
ENSPSIG00000017149	LSM7	89	77.228	ENSODEG00000008190	-	89	76.344	Octodon_degus
ENSPSIG00000017149	LSM7	89	96.040	ENSONIG00000001801	lsm7	87	96.040	Oreochromis_niloticus
ENSPSIG00000017149	LSM7	89	97.030	ENSORLG00000023951	lsm7	98	97.030	Oryzias_latipes
ENSPSIG00000017149	LSM7	89	97.030	ENSORLG00020022226	lsm7	98	97.030	Oryzias_latipes_hni
ENSPSIG00000017149	LSM7	89	97.030	ENSORLG00015020044	lsm7	94	97.030	Oryzias_latipes_hsok
ENSPSIG00000017149	LSM7	89	97.030	ENSOMEG00000012806	lsm7	98	97.030	Oryzias_melastigma
ENSPSIG00000017149	LSM7	89	86.139	ENSOGAG00000024373	-	91	86.022	Otolemur_garnettii
ENSPSIG00000017149	LSM7	89	96.040	ENSOGAG00000000144	-	99	96.040	Otolemur_garnettii
ENSPSIG00000017149	LSM7	89	98.020	ENSOARG00000014013	LSM7	98	98.020	Ovis_aries
ENSPSIG00000017149	LSM7	89	98.020	ENSPPAG00000026500	LSM7	98	98.020	Pan_paniscus
ENSPSIG00000017149	LSM7	89	97.030	ENSPPRG00000008624	LSM7	98	97.030	Panthera_pardus
ENSPSIG00000017149	LSM7	89	97.030	ENSPTIG00000016252	LSM7	98	97.030	Panthera_tigris_altaica
ENSPSIG00000017149	LSM7	89	98.020	ENSPTRG00000010233	LSM7	98	98.020	Pan_troglodytes
ENSPSIG00000017149	LSM7	89	98.020	ENSPANG00000020668	LSM7	98	98.020	Papio_anubis
ENSPSIG00000017149	LSM7	89	99.010	ENSPKIG00000011325	lsm7	98	99.010	Paramormyrops_kingsleyae
ENSPSIG00000017149	LSM7	89	97.030	ENSPMGG00000006498	lsm7	98	97.030	Periophthalmus_magnuspinnatus
ENSPSIG00000017149	LSM7	89	99.010	ENSPCIG00000030454	LSM7	99	99.010	Phascolarctos_cinereus
ENSPSIG00000017149	LSM7	89	97.030	ENSPFOG00000012467	lsm7	89	97.030	Poecilia_formosa
ENSPSIG00000017149	LSM7	89	97.030	ENSPLAG00000000252	lsm7	94	97.030	Poecilia_latipinna
ENSPSIG00000017149	LSM7	89	97.030	ENSPMEG00000000587	lsm7	94	97.030	Poecilia_mexicana
ENSPSIG00000017149	LSM7	68	77.215	ENSPREG00000016718	lsm7	63	77.215	Poecilia_reticulata
ENSPSIG00000017149	LSM7	64	95.890	ENSPPYG00000009348	-	50	95.890	Pongo_abelii
ENSPSIG00000017149	LSM7	89	98.020	ENSPCOG00000017177	LSM7	99	98.020	Propithecus_coquereli
ENSPSIG00000017149	LSM7	89	96.040	ENSPNYG00000006938	lsm7	98	96.040	Pundamilia_nyererei
ENSPSIG00000017149	LSM7	89	97.030	ENSPNAG00000010141	lsm7	99	97.030	Pygocentrus_nattereri
ENSPSIG00000017149	LSM7	88	98.000	ENSRNOG00000019552	Lsm7	97	98.000	Rattus_norvegicus
ENSPSIG00000017149	LSM7	89	98.020	ENSRBIG00000035978	LSM7	98	98.020	Rhinopithecus_bieti
ENSPSIG00000017149	LSM7	89	98.020	ENSRROG00000034044	LSM7	98	98.020	Rhinopithecus_roxellana
ENSPSIG00000017149	LSM7	75	49.438	YNL147W	-	75	48.837	Saccharomyces_cerevisiae
ENSPSIG00000017149	LSM7	89	98.020	ENSSBOG00000034899	LSM7	98	98.020	Saimiri_boliviensis_boliviensis
ENSPSIG00000017149	LSM7	89	97.030	ENSSFOG00015006728	lsm7	98	97.030	Scleropages_formosus
ENSPSIG00000017149	LSM7	94	92.523	ENSSMAG00000004195	lsm7	93	97.030	Scophthalmus_maximus
ENSPSIG00000017149	LSM7	89	97.030	ENSSDUG00000001863	lsm7	98	97.030	Seriola_dumerili
ENSPSIG00000017149	LSM7	89	97.030	ENSSLDG00000016339	lsm7	98	97.030	Seriola_lalandi_dorsalis
ENSPSIG00000017149	LSM7	94	92.523	ENSSPAG00000015221	lsm7	98	97.030	Stegastes_partitus
ENSPSIG00000017149	LSM7	89	98.020	ENSSSCG00000013463	LSM7	99	98.020	Sus_scrofa
ENSPSIG00000017149	LSM7	89	99.010	ENSTGUG00000000067	LSM7	100	99.010	Taeniopygia_guttata
ENSPSIG00000017149	LSM7	89	97.030	ENSTRUG00000022913	lsm7	98	97.030	Takifugu_rubripes
ENSPSIG00000017149	LSM7	89	97.030	ENSTNIG00000015525	lsm7	98	97.030	Tetraodon_nigroviridis
ENSPSIG00000017149	LSM7	61	84.286	ENSTBEG00000016602	LSM7	100	84.286	Tupaia_belangeri
ENSPSIG00000017149	LSM7	89	97.030	ENSUAMG00000000912	LSM7	84	97.030	Ursus_americanus
ENSPSIG00000017149	LSM7	89	97.030	ENSUMAG00000006556	LSM7	78	98.000	Ursus_maritimus
ENSPSIG00000017149	LSM7	62	95.775	ENSVVUG00000002640	LSM7	65	95.775	Vulpes_vulpes
ENSPSIG00000017149	LSM7	89	97.030	ENSXETG00000022166	lsm7	100	97.030	Xenopus_tropicalis
ENSPSIG00000017149	LSM7	89	98.020	ENSXCOG00000002572	lsm7	99	98.020	Xiphophorus_couchianus
ENSPSIG00000017149	LSM7	89	98.020	ENSXMAG00000018630	lsm7	98	98.020	Xiphophorus_maculatus