EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPSIG00000017222 (Gene tree)
Gene ID: 102457188
Gene Symbol: SF3B1
Alias: -
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Minus strand
Length: 40660 bases
Position: chrJH207332.1:4583736-4624395
Accession: 102457188
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000019479	SF3b1	PF08920.10	4.6e-47	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000019570	SF3B1-201	7215	XM_006117954	ENSPSIP00000019479	1293 (aa)	XP_006118016	K7GGR8

Gene Model

Click here to download ENSPSIG00000017222's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000017222's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000017222	SF3B1	98	97.991	ENSG00000115524	SF3B1	99	97.991	Homo_sapiens
ENSPSIG00000017222	SF3B1	98	92.704	ENSAPOG00000011894	sf3b1	99	92.567	Acanthochromis_polyacanthus
ENSPSIG00000017222	SF3B1	98	97.915	ENSAMEG00000013809	SF3B1	99	97.915	Ailuropoda_melanoleuca
ENSPSIG00000017222	SF3B1	98	92.077	ENSACIG00000020910	sf3b1	96	92.077	Amphilophus_citrinellus
ENSPSIG00000017222	SF3B1	98	92.567	ENSAOCG00000004478	sf3b1	99	92.567	Amphiprion_ocellaris
ENSPSIG00000017222	SF3B1	98	92.567	ENSAPEG00000012937	sf3b1	99	92.567	Amphiprion_percula
ENSPSIG00000017222	SF3B1	98	92.929	ENSATEG00000020435	sf3b1	99	92.929	Anabas_testudineus
ENSPSIG00000017222	SF3B1	99	98.224	ENSAPLG00000003993	SF3B1	99	98.224	Anas_platyrhynchos
ENSPSIG00000017222	SF3B1	98	97.910	ENSACAG00000009612	SF3B1	99	97.910	Anolis_carolinensis
ENSPSIG00000017222	SF3B1	99	97.692	ENSANAG00000021577	SF3B1	100	98.014	Aotus_nancymaae
ENSPSIG00000017222	SF3B1	98	91.718	ENSACLG00000023470	sf3b1	99	91.718	Astatotilapia_calliptera
ENSPSIG00000017222	SF3B1	98	92.950	ENSAMXG00000002219	sf3b1	99	92.950	Astyanax_mexicanus
ENSPSIG00000017222	SF3B1	98	97.913	ENSBTAG00000008915	SF3B1	99	97.913	Bos_taurus
ENSPSIG00000017222	SF3B1	97	66.566	WBGene00011605	sftb-1	98	66.566	Caenorhabditis_elegans
ENSPSIG00000017222	SF3B1	98	97.991	ENSCJAG00000003902	SF3B1	99	97.991	Callithrix_jacchus
ENSPSIG00000017222	SF3B1	98	97.991	ENSCAFG00000010826	SF3B1	99	97.991	Canis_familiaris
ENSPSIG00000017222	SF3B1	98	97.991	ENSCAFG00020004750	SF3B1	99	97.991	Canis_lupus_dingo
ENSPSIG00000017222	SF3B1	98	97.913	ENSCHIG00000015226	SF3B1	99	97.913	Capra_hircus
ENSPSIG00000017222	SF3B1	98	97.913	ENSTSYG00000009214	SF3B1	99	97.913	Carlito_syrichta
ENSPSIG00000017222	SF3B1	99	97.917	ENSCAPG00000006547	SF3B1	99	97.917	Cavia_aperea
ENSPSIG00000017222	SF3B1	99	97.917	ENSCPOG00000009353	SF3B1	100	97.991	Cavia_porcellus
ENSPSIG00000017222	SF3B1	98	97.991	ENSCCAG00000020506	SF3B1	99	97.991	Cebus_capucinus
ENSPSIG00000017222	SF3B1	98	97.991	ENSCATG00000035735	SF3B1	99	97.991	Cercocebus_atys
ENSPSIG00000017222	SF3B1	98	97.991	ENSCLAG00000014767	SF3B1	99	97.991	Chinchilla_lanigera
ENSPSIG00000017222	SF3B1	98	97.991	ENSCSAG00000011505	SF3B1	99	97.991	Chlorocebus_sabaeus
ENSPSIG00000017222	SF3B1	76	98.182	ENSCHOG00000009860	SF3B1	75	98.148	Choloepus_hoffmanni
ENSPSIG00000017222	SF3B1	98	98.528	ENSCPBG00000021902	SF3B1	100	98.387	Chrysemys_picta_bellii
ENSPSIG00000017222	SF3B1	67	77.619	ENSCING00000002558	-	99	78.062	Ciona_intestinalis
ENSPSIG00000017222	SF3B1	98	79.603	ENSCSAVG00000002559	-	99	79.281	Ciona_savignyi
ENSPSIG00000017222	SF3B1	99	97.692	ENSCANG00000029415	SF3B1	99	97.991	Colobus_angolensis_palliatus
ENSPSIG00000017222	SF3B1	99	97.994	ENSCGRG00001016990	Sf3b1	99	97.994	Cricetulus_griseus_chok1gshd
ENSPSIG00000017222	SF3B1	99	97.994	ENSCGRG00000005301	Sf3b1	99	97.994	Cricetulus_griseus_crigri
ENSPSIG00000017222	SF3B1	98	89.000	ENSCSEG00000003860	sf3b1	99	89.000	Cynoglossus_semilaevis
ENSPSIG00000017222	SF3B1	94	92.658	ENSCVAG00000003680	sf3b1	99	92.658	Cyprinodon_variegatus
ENSPSIG00000017222	SF3B1	98	92.720	ENSDARG00000056138	sf3b1	99	92.720	Danio_rerio
ENSPSIG00000017222	SF3B1	98	97.915	ENSDNOG00000011754	SF3B1	99	97.915	Dasypus_novemcinctus
ENSPSIG00000017222	SF3B1	98	95.437	ENSDORG00000002399	Sf3b1	99	95.437	Dipodomys_ordii
ENSPSIG00000017222	SF3B1	98	76.300	FBgn0031266	Sf3b1	99	76.300	Drosophila_melanogaster
ENSPSIG00000017222	SF3B1	82	97.032	ENSETEG00000009188	SF3B1	100	97.032	Echinops_telfairi
ENSPSIG00000017222	SF3B1	98	88.465	ENSEBUG00000004325	sf3b1	100	91.005	Eptatretus_burgeri
ENSPSIG00000017222	SF3B1	98	97.991	ENSEASG00005020159	SF3B1	97	97.991	Equus_asinus_asinus
ENSPSIG00000017222	SF3B1	98	97.991	ENSECAG00000021657	SF3B1	97	97.991	Equus_caballus
ENSPSIG00000017222	SF3B1	85	100.000	ENSEEUG00000000836	SF3B1	80	100.000	Erinaceus_europaeus
ENSPSIG00000017222	SF3B1	98	91.933	ENSELUG00000005977	sf3b1	97	92.161	Esox_lucius
ENSPSIG00000017222	SF3B1	98	97.991	ENSFCAG00000005038	SF3B1	99	97.991	Felis_catus
ENSPSIG00000017222	SF3B1	99	97.992	ENSFALG00000004281	SF3B1	99	97.992	Ficedula_albicollis
ENSPSIG00000017222	SF3B1	98	97.991	ENSFDAG00000017510	SF3B1	99	97.991	Fukomys_damarensis
ENSPSIG00000017222	SF3B1	98	91.648	ENSFHEG00000014333	sf3b1	99	91.648	Fundulus_heteroclitus
ENSPSIG00000017222	SF3B1	98	92.396	ENSGMOG00000006773	sf3b1	99	92.550	Gadus_morhua
ENSPSIG00000017222	SF3B1	98	98.296	ENSGALG00000008038	SF3B1	99	98.296	Gallus_gallus
ENSPSIG00000017222	SF3B1	98	92.581	ENSGAFG00000000704	sf3b1	99	92.581	Gambusia_affinis
ENSPSIG00000017222	SF3B1	98	92.166	ENSGACG00000008839	sf3b1	99	92.473	Gasterosteus_aculeatus
ENSPSIG00000017222	SF3B1	98	98.528	ENSGAGG00000017478	SF3B1	99	98.528	Gopherus_agassizii
ENSPSIG00000017222	SF3B1	99	93.541	ENSGGOG00000009264	SF3B1	99	90.061	Gorilla_gorilla
ENSPSIG00000017222	SF3B1	98	91.782	ENSHBUG00000007705	sf3b1	99	91.782	Haplochromis_burtoni
ENSPSIG00000017222	SF3B1	99	97.766	ENSHGLG00000008285	-	99	97.766	Heterocephalus_glaber_female
ENSPSIG00000017222	SF3B1	99	95.763	ENSHGLG00100005535	-	99	95.763	Heterocephalus_glaber_male
ENSPSIG00000017222	SF3B1	98	91.921	ENSHCOG00000016775	sf3b1	99	91.997	Hippocampus_comes
ENSPSIG00000017222	SF3B1	98	94.319	ENSIPUG00000013171	sf3b1	99	94.319	Ictalurus_punctatus
ENSPSIG00000017222	SF3B1	98	97.991	ENSSTOG00000011034	SF3B1	99	97.991	Ictidomys_tridecemlineatus
ENSPSIG00000017222	SF3B1	98	97.907	ENSJJAG00000010903	Sf3b1	99	97.907	Jaculus_jaculus
ENSPSIG00000017222	SF3B1	98	91.896	ENSKMAG00000004009	sf3b1	99	91.972	Kryptolebias_marmoratus
ENSPSIG00000017222	SF3B1	98	92.604	ENSLBEG00000022208	sf3b1	99	92.604	Labrus_bergylta
ENSPSIG00000017222	SF3B1	98	91.334	ENSLACG00000014832	SF3B1	99	91.258	Latimeria_chalumnae
ENSPSIG00000017222	SF3B1	98	93.726	ENSLOCG00000003899	sf3b1	99	93.726	Lepisosteus_oculatus
ENSPSIG00000017222	SF3B1	99	97.917	ENSLAFG00000001956	SF3B1	99	97.991	Loxodonta_africana
ENSPSIG00000017222	SF3B1	99	97.917	ENSMMUG00000022430	SF3B1	99	97.692	Macaca_mulatta
ENSPSIG00000017222	SF3B1	99	97.395	ENSMNEG00000042333	SF3B1	100	98.014	Macaca_nemestrina
ENSPSIG00000017222	SF3B1	94	93.909	ENSMLEG00000026141	SF3B1	98	93.929	Mandrillus_leucophaeus
ENSPSIG00000017222	SF3B1	98	92.791	ENSMAMG00000010241	sf3b1	99	92.791	Mastacembelus_armatus
ENSPSIG00000017222	SF3B1	98	91.718	ENSMZEG00005021254	sf3b1	99	91.718	Maylandia_zebra
ENSPSIG00000017222	SF3B1	99	97.602	ENSMGAG00000007017	SF3B1	99	97.602	Meleagris_gallopavo
ENSPSIG00000017222	SF3B1	99	93.088	ENSMAUG00000009071	Sf3b1	99	93.241	Mesocricetus_auratus
ENSPSIG00000017222	SF3B1	99	97.462	ENSMICG00000013879	SF3B1	99	97.913	Microcebus_murinus
ENSPSIG00000017222	SF3B1	98	93.586	ENSMOCG00000000455	Sf3b1	99	93.586	Microtus_ochrogaster
ENSPSIG00000017222	SF3B1	82	92.151	ENSMMOG00000000475	sf3b1	99	92.151	Mola_mola
ENSPSIG00000017222	SF3B1	98	97.834	ENSMODG00000012275	SF3B1	99	97.834	Monodelphis_domestica
ENSPSIG00000017222	SF3B1	98	92.715	ENSMALG00000017211	sf3b1	99	92.715	Monopterus_albus
ENSPSIG00000017222	SF3B1	98	97.991	MGP_CAROLIEiJ_G0014141	Sf3b1	99	97.991	Mus_caroli
ENSPSIG00000017222	SF3B1	98	97.991	ENSMUSG00000025982	Sf3b1	99	97.991	Mus_musculus
ENSPSIG00000017222	SF3B1	98	97.991	MGP_SPRETEiJ_G0014947	Sf3b1	99	97.991	Mus_spretus
ENSPSIG00000017222	SF3B1	98	97.991	ENSMPUG00000007799	SF3B1	99	97.991	Mustela_putorius_furo
ENSPSIG00000017222	SF3B1	98	96.754	ENSMLUG00000000840	SF3B1	99	96.754	Myotis_lucifugus
ENSPSIG00000017222	SF3B1	99	97.992	ENSNGAG00000021884	-	99	97.992	Nannospalax_galili
ENSPSIG00000017222	SF3B1	98	87.932	ENSNBRG00000015816	sf3b1	99	87.932	Neolamprologus_brichardi
ENSPSIG00000017222	SF3B1	99	97.917	ENSNLEG00000006861	SF3B1	99	97.991	Nomascus_leucogenys
ENSPSIG00000017222	SF3B1	69	100.000	ENSMEUG00000015848	-	66	100.000	Notamacropus_eugenii
ENSPSIG00000017222	SF3B1	98	84.798	ENSOPRG00000008596	SF3B1	99	84.774	Ochotona_princeps
ENSPSIG00000017222	SF3B1	98	97.991	ENSODEG00000011153	-	99	97.991	Octodon_degus
ENSPSIG00000017222	SF3B1	98	91.718	ENSONIG00000013758	sf3b1	99	91.718	Oreochromis_niloticus
ENSPSIG00000017222	SF3B1	84	98.708	ENSOCUG00000012722	-	96	98.708	Oryctolagus_cuniculus
ENSPSIG00000017222	SF3B1	98	92.331	ENSORLG00000020219	sf3b1	99	92.331	Oryzias_latipes
ENSPSIG00000017222	SF3B1	98	92.331	ENSORLG00020001746	sf3b1	99	92.331	Oryzias_latipes_hni
ENSPSIG00000017222	SF3B1	62	89.251	ENSORLG00015001759	sf3b1	97	89.251	Oryzias_latipes_hsok
ENSPSIG00000017222	SF3B1	98	92.490	ENSOMEG00000019231	sf3b1	99	92.490	Oryzias_melastigma
ENSPSIG00000017222	SF3B1	98	97.913	ENSOARG00000015374	SF3B1	99	97.913	Ovis_aries
ENSPSIG00000017222	SF3B1	99	97.917	ENSPPAG00000035007	SF3B1	99	97.991	Pan_paniscus
ENSPSIG00000017222	SF3B1	98	97.991	ENSPPRG00000009090	SF3B1	99	97.991	Panthera_pardus
ENSPSIG00000017222	SF3B1	98	97.991	ENSPTIG00000021557	SF3B1	99	97.991	Panthera_tigris_altaica
ENSPSIG00000017222	SF3B1	98	90.240	ENSPTRG00000012771	SF3B1	99	90.395	Pan_troglodytes
ENSPSIG00000017222	SF3B1	98	97.991	ENSPANG00000013417	SF3B1	99	97.991	Papio_anubis
ENSPSIG00000017222	SF3B1	98	93.860	ENSPKIG00000000784	sf3b1	99	93.860	Paramormyrops_kingsleyae
ENSPSIG00000017222	SF3B1	89	92.766	ENSPMGG00000004330	sf3b1	98	92.766	Periophthalmus_magnuspinnatus
ENSPSIG00000017222	SF3B1	98	97.991	ENSPEMG00000010699	Sf3b1	99	97.991	Peromyscus_maniculatus_bairdii
ENSPSIG00000017222	SF3B1	98	89.340	ENSPMAG00000001311	sf3b1	99	89.340	Petromyzon_marinus
ENSPSIG00000017222	SF3B1	98	97.757	ENSPCIG00000010642	SF3B1	99	97.757	Phascolarctos_cinereus
ENSPSIG00000017222	SF3B1	98	92.420	ENSPFOG00000000073	sf3b1	99	92.420	Poecilia_formosa
ENSPSIG00000017222	SF3B1	98	92.490	ENSPLAG00000002293	sf3b1	99	92.490	Poecilia_latipinna
ENSPSIG00000017222	SF3B1	98	92.490	ENSPMEG00000000446	sf3b1	97	92.490	Poecilia_mexicana
ENSPSIG00000017222	SF3B1	98	92.567	ENSPREG00000019652	sf3b1	99	92.567	Poecilia_reticulata
ENSPSIG00000017222	SF3B1	84	99.723	ENSPPYG00000013044	SF3B1	95	99.723	Pongo_abelii
ENSPSIG00000017222	SF3B1	98	97.836	ENSPCAG00000009292	SF3B1	99	97.836	Procavia_capensis
ENSPSIG00000017222	SF3B1	98	97.913	ENSPCOG00000024074	SF3B1	99	97.913	Propithecus_coquereli
ENSPSIG00000017222	SF3B1	98	97.991	ENSPVAG00000008302	SF3B1	99	97.991	Pteropus_vampyrus
ENSPSIG00000017222	SF3B1	98	91.718	ENSPNYG00000014939	sf3b1	99	91.718	Pundamilia_nyererei
ENSPSIG00000017222	SF3B1	98	92.874	ENSPNAG00000008288	sf3b1	99	92.950	Pygocentrus_nattereri
ENSPSIG00000017222	SF3B1	98	97.991	ENSRNOG00000013516	Sf3b1	99	97.991	Rattus_norvegicus
ENSPSIG00000017222	SF3B1	98	94.436	ENSRBIG00000026096	SF3B1	99	94.436	Rhinopithecus_bieti
ENSPSIG00000017222	SF3B1	98	97.991	ENSRROG00000031308	SF3B1	99	97.991	Rhinopithecus_roxellana
ENSPSIG00000017222	SF3B1	98	97.991	ENSSBOG00000020080	SF3B1	99	97.991	Saimiri_boliviensis_boliviensis
ENSPSIG00000017222	SF3B1	98	97.834	ENSSHAG00000017564	SF3B1	99	97.834	Sarcophilus_harrisii
ENSPSIG00000017222	SF3B1	98	94.100	ENSSFOG00015021535	sf3b1	99	94.100	Scleropages_formosus
ENSPSIG00000017222	SF3B1	98	91.820	ENSSMAG00000013977	sf3b1	98	91.896	Scophthalmus_maximus
ENSPSIG00000017222	SF3B1	98	92.561	ENSSDUG00000017422	sf3b1	99	92.561	Seriola_dumerili
ENSPSIG00000017222	SF3B1	98	92.485	ENSSLDG00000019495	sf3b1	99	92.485	Seriola_lalandi_dorsalis
ENSPSIG00000017222	SF3B1	76	99.824	ENSSARG00000007016	SF3B1	76	99.824	Sorex_araneus
ENSPSIG00000017222	SF3B1	98	98.296	ENSSPUG00000000410	SF3B1	99	98.296	Sphenodon_punctatus
ENSPSIG00000017222	SF3B1	98	92.638	ENSSPAG00000010451	sf3b1	98	92.638	Stegastes_partitus
ENSPSIG00000017222	SF3B1	90	97.455	ENSSSCG00000016075	SF3B1	100	98.014	Sus_scrofa
ENSPSIG00000017222	SF3B1	98	98.218	ENSTGUG00000010553	SF3B1	99	98.218	Taeniopygia_guttata
ENSPSIG00000017222	SF3B1	98	92.638	ENSTRUG00000015534	sf3b1	99	92.638	Takifugu_rubripes
ENSPSIG00000017222	SF3B1	85	99.586	ENSTBEG00000008714	SF3B1	92	99.586	Tupaia_belangeri
ENSPSIG00000017222	SF3B1	91	94.058	ENSTTRG00000003414	SF3B1	92	94.058	Tursiops_truncatus
ENSPSIG00000017222	SF3B1	93	91.211	ENSUAMG00000018506	SF3B1	99	98.988	Ursus_americanus
ENSPSIG00000017222	SF3B1	98	97.991	ENSUMAG00000020945	SF3B1	99	97.991	Ursus_maritimus
ENSPSIG00000017222	SF3B1	95	95.122	ENSVPAG00000005798	SF3B1	95	95.122	Vicugna_pacos
ENSPSIG00000017222	SF3B1	98	97.991	ENSVVUG00000025948	SF3B1	94	97.991	Vulpes_vulpes
ENSPSIG00000017222	SF3B1	98	95.437	ENSXETG00000013339	sf3b1	99	95.437	Xenopus_tropicalis
ENSPSIG00000017222	SF3B1	98	90.469	ENSXCOG00000018086	sf3b1	99	90.469	Xiphophorus_couchianus
ENSPSIG00000017222	SF3B1	98	92.490	ENSXMAG00000007369	sf3b1	99	92.702	Xiphophorus_maculatus