EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPSIG00000018050 (Gene tree)
Gene ID: 102459789
Gene Symbol: XRN1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Pelodiscus_sinensis
Status: putative
Strand: Plus strand
Length: 84793 bases
Position: chrJH209112.1:1344666-1429458
Accession: 102459789
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPSIP00000020407	XRN_N	PF03159.18	5.5e-93	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPSIT00000020504	XRN1-201	5284	XM_006123991	ENSPSIP00000020407	1747 (aa)	XP_014429531	K7GJE6

Gene Model

Click here to download ENSPSIG00000018050's gene model file

Pathways

Pathway ID	Pathway Name	Source
pss03008	Ribosome biogenesis in eukaryotes	KEGG
pss03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPSIG00000018050's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPSIG00000018050	XRN1	100	76.528	ENSG00000114127	XRN1	96	96.117	Homo_sapiens
ENSPSIG00000018050	XRN1	96	72.303	ENSAPOG00000000622	xrn1	100	72.039	Acanthochromis_polyacanthus
ENSPSIG00000018050	XRN1	100	77.195	ENSAMEG00000012538	XRN1	100	77.550	Ailuropoda_melanoleuca
ENSPSIG00000018050	XRN1	93	72.132	ENSACIG00000001057	xrn1	99	72.132	Amphilophus_citrinellus
ENSPSIG00000018050	XRN1	95	69.558	ENSAOCG00000014097	xrn1	99	69.481	Amphiprion_ocellaris
ENSPSIG00000018050	XRN1	100	59.878	ENSAPEG00000006620	xrn1	92	71.724	Amphiprion_percula
ENSPSIG00000018050	XRN1	91	70.426	ENSATEG00000009752	xrn1	99	70.268	Anabas_testudineus
ENSPSIG00000018050	XRN1	99	85.342	ENSAPLG00000004905	XRN1	100	85.342	Anas_platyrhynchos
ENSPSIG00000018050	XRN1	100	77.790	ENSACAG00000004985	XRN1	100	77.790	Anolis_carolinensis
ENSPSIG00000018050	XRN1	100	76.927	ENSANAG00000029013	XRN1	99	86.280	Aotus_nancymaae
ENSPSIG00000018050	XRN1	100	60.288	ENSACLG00000004806	xrn1	99	60.310	Astatotilapia_calliptera
ENSPSIG00000018050	XRN1	100	60.991	ENSAMXG00000019370	xrn1	95	92.233	Astyanax_mexicanus
ENSPSIG00000018050	XRN1	100	75.737	ENSBTAG00000011524	XRN1	100	75.850	Bos_taurus
ENSPSIG00000018050	XRN1	100	76.756	ENSCJAG00000001872	XRN1	100	76.642	Callithrix_jacchus
ENSPSIG00000018050	XRN1	100	77.898	ENSCAFG00000007783	XRN1	100	78.013	Canis_familiaris
ENSPSIG00000018050	XRN1	100	77.898	ENSCAFG00020009120	XRN1	99	86.310	Canis_lupus_dingo
ENSPSIG00000018050	XRN1	99	77.002	ENSCHIG00000019192	XRN1	99	77.117	Capra_hircus
ENSPSIG00000018050	XRN1	100	76.756	ENSTSYG00000002705	XRN1	100	76.585	Carlito_syrichta
ENSPSIG00000018050	XRN1	100	76.985	ENSCCAG00000034800	XRN1	99	88.114	Cebus_capucinus
ENSPSIG00000018050	XRN1	100	77.156	ENSCATG00000041794	XRN1	100	77.042	Cercocebus_atys
ENSPSIG00000018050	XRN1	100	75.856	ENSCLAG00000001451	XRN1	99	88.114	Chinchilla_lanigera
ENSPSIG00000018050	XRN1	100	76.644	ENSCSAG00000011265	XRN1	100	76.531	Chlorocebus_sabaeus
ENSPSIG00000018050	XRN1	60	98.701	ENSCHOG00000013961	-	62	98.701	Choloepus_hoffmanni
ENSPSIG00000018050	XRN1	68	45.078	ENSCSAVG00000008584	-	98	44.766	Ciona_savignyi
ENSPSIG00000018050	XRN1	100	77.270	ENSCANG00000037495	XRN1	99	88.114	Colobus_angolensis_palliatus
ENSPSIG00000018050	XRN1	100	76.114	ENSCGRG00001019411	Xrn1	99	87.322	Cricetulus_griseus_chok1gshd
ENSPSIG00000018050	XRN1	100	76.114	ENSCGRG00000012464	Xrn1	99	87.322	Cricetulus_griseus_crigri
ENSPSIG00000018050	XRN1	100	56.317	ENSCSEG00000021285	xrn1	94	93.269	Cynoglossus_semilaevis
ENSPSIG00000018050	XRN1	65	68.624	ENSCVAG00000013089	xrn1	99	72.408	Cyprinodon_variegatus
ENSPSIG00000018050	XRN1	100	61.905	ENSDARG00000091652	xrn1	98	80.842	Danio_rerio
ENSPSIG00000018050	XRN1	100	74.857	ENSDORG00000013833	Xrn1	100	74.971	Dipodomys_ordii
ENSPSIG00000018050	XRN1	69	40.853	FBgn0020261	pcm	72	40.750	Drosophila_melanogaster
ENSPSIG00000018050	XRN1	86	87.611	ENSETEG00000003978	XRN1	88	88.095	Echinops_telfairi
ENSPSIG00000018050	XRN1	100	77.099	ENSEASG00005002687	XRN1	99	87.639	Equus_asinus_asinus
ENSPSIG00000018050	XRN1	100	75.680	ENSECAG00000008301	XRN1	100	75.964	Equus_caballus
ENSPSIG00000018050	XRN1	92	75.415	ENSEEUG00000011323	XRN1	92	75.415	Erinaceus_europaeus
ENSPSIG00000018050	XRN1	100	61.642	ENSELUG00000000169	xrn1	100	61.684	Esox_lucius
ENSPSIG00000018050	XRN1	100	73.116	ENSFCAG00000027589	XRN1	99	87.527	Felis_catus
ENSPSIG00000018050	XRN1	100	82.950	ENSFALG00000007021	XRN1	100	83.174	Ficedula_albicollis
ENSPSIG00000018050	XRN1	100	76.484	ENSFDAG00000020494	XRN1	99	87.639	Fukomys_damarensis
ENSPSIG00000018050	XRN1	82	67.446	ENSGMOG00000006396	xrn1	83	67.780	Gadus_morhua
ENSPSIG00000018050	XRN1	100	83.679	ENSGALG00000002706	XRN1	100	83.623	Gallus_gallus
ENSPSIG00000018050	XRN1	100	60.740	ENSGACG00000014328	xrn1	100	60.806	Gasterosteus_aculeatus
ENSPSIG00000018050	XRN1	95	92.853	ENSGAGG00000017535	XRN1	99	92.853	Gopherus_agassizii
ENSPSIG00000018050	XRN1	100	76.813	ENSGGOG00000008047	XRN1	100	76.813	Gorilla_gorilla
ENSPSIG00000018050	XRN1	94	70.463	ENSHBUG00000005908	xrn1	98	74.074	Haplochromis_burtoni
ENSPSIG00000018050	XRN1	100	77.011	ENSHGLG00000014476	XRN1	99	88.114	Heterocephalus_glaber_female
ENSPSIG00000018050	XRN1	100	77.068	ENSHGLG00100015130	XRN1	99	88.114	Heterocephalus_glaber_male
ENSPSIG00000018050	XRN1	94	70.391	ENSHCOG00000014062	xrn1	99	70.574	Hippocampus_comes
ENSPSIG00000018050	XRN1	100	60.963	ENSIPUG00000015229	xrn1	100	61.329	Ictalurus_punctatus
ENSPSIG00000018050	XRN1	100	77.784	ENSSTOG00000013552	XRN1	99	87.797	Ictidomys_tridecemlineatus
ENSPSIG00000018050	XRN1	99	74.986	ENSJJAG00000010863	Xrn1	99	86.469	Jaculus_jaculus
ENSPSIG00000018050	XRN1	95	61.141	ENSKMAG00000021356	xrn1	94	74.066	Kryptolebias_marmoratus
ENSPSIG00000018050	XRN1	100	60.584	ENSLBEG00000018656	xrn1	97	94.175	Labrus_bergylta
ENSPSIG00000018050	XRN1	100	72.061	ENSLACG00000009020	XRN1	100	72.061	Latimeria_chalumnae
ENSPSIG00000018050	XRN1	100	65.247	ENSLOCG00000007944	xrn1	100	65.114	Lepisosteus_oculatus
ENSPSIG00000018050	XRN1	61	86.300	ENSLAFG00000015426	XRN1	100	86.300	Loxodonta_africana
ENSPSIG00000018050	XRN1	100	77.213	ENSMFAG00000032599	XRN1	100	77.099	Macaca_fascicularis
ENSPSIG00000018050	XRN1	100	77.156	ENSMMUG00000014038	XRN1	100	77.042	Macaca_mulatta
ENSPSIG00000018050	XRN1	100	77.042	ENSMNEG00000034217	XRN1	100	76.927	Macaca_nemestrina
ENSPSIG00000018050	XRN1	92	70.399	ENSMAMG00000013219	xrn1	95	75.820	Mastacembelus_armatus
ENSPSIG00000018050	XRN1	100	60.310	ENSMZEG00005015099	xrn1	99	60.310	Maylandia_zebra
ENSPSIG00000018050	XRN1	99	83.488	ENSMGAG00000006333	XRN1	100	83.430	Meleagris_gallopavo
ENSPSIG00000018050	XRN1	100	77.024	ENSMICG00000048948	XRN1	96	96.117	Microcebus_murinus
ENSPSIG00000018050	XRN1	55	86.730	ENSMOCG00000008665	Xrn1	99	87.005	Microtus_ochrogaster
ENSPSIG00000018050	XRN1	100	76.614	ENSMODG00000021236	XRN1	100	76.670	Monodelphis_domestica
ENSPSIG00000018050	XRN1	100	56.569	ENSMALG00000004098	xrn1	100	56.725	Monopterus_albus
ENSPSIG00000018050	XRN1	100	69.213	MGP_CAROLIEiJ_G0032535	Xrn1	100	95.000	Mus_caroli
ENSPSIG00000018050	XRN1	100	74.629	ENSMUSG00000032410	Xrn1	100	95.000	Mus_musculus
ENSPSIG00000018050	XRN1	100	74.900	MGP_PahariEiJ_G0015404	Xrn1	100	95.000	Mus_pahari
ENSPSIG00000018050	XRN1	100	74.743	MGP_SPRETEiJ_G0033678	Xrn1	100	95.000	Mus_spretus
ENSPSIG00000018050	XRN1	100	76.417	ENSMPUG00000012040	XRN1	100	76.474	Mustela_putorius_furo
ENSPSIG00000018050	XRN1	100	76.826	ENSMLUG00000016885	XRN1	100	76.655	Myotis_lucifugus
ENSPSIG00000018050	XRN1	56	82.938	ENSNGAG00000023964	Xrn1	99	83.201	Nannospalax_galili
ENSPSIG00000018050	XRN1	100	76.699	ENSNLEG00000004726	XRN1	100	76.756	Nomascus_leucogenys
ENSPSIG00000018050	XRN1	70	96.907	ENSMEUG00000014473	-	72	97.087	Notamacropus_eugenii
ENSPSIG00000018050	XRN1	75	75.917	ENSOPRG00000007337	-	76	75.917	Ochotona_princeps
ENSPSIG00000018050	XRN1	100	62.108	ENSONIG00000016673	xrn1	99	64.465	Oreochromis_niloticus
ENSPSIG00000018050	XRN1	92	73.827	ENSOANG00000006735	XRN1	100	74.273	Ornithorhynchus_anatinus
ENSPSIG00000018050	XRN1	100	76.701	ENSOCUG00000001861	XRN1	100	76.587	Oryctolagus_cuniculus
ENSPSIG00000018050	XRN1	95	71.059	ENSORLG00000013005	xrn1	100	60.011	Oryzias_latipes
ENSPSIG00000018050	XRN1	95	71.059	ENSORLG00020005559	xrn1	99	70.726	Oryzias_latipes_hni
ENSPSIG00000018050	XRN1	100	61.287	ENSORLG00015022523	xrn1	98	70.833	Oryzias_latipes_hsok
ENSPSIG00000018050	XRN1	91	72.639	ENSOMEG00000015397	xrn1	99	72.639	Oryzias_melastigma
ENSPSIG00000018050	XRN1	100	74.645	ENSOGAG00000000170	XRN1	100	74.773	Otolemur_garnettii
ENSPSIG00000018050	XRN1	99	76.831	ENSOARG00000006343	XRN1	99	76.888	Ovis_aries
ENSPSIG00000018050	XRN1	100	76.857	ENSPPAG00000010180	XRN1	100	76.927	Pan_paniscus
ENSPSIG00000018050	XRN1	100	76.941	ENSPPRG00000007125	XRN1	100	76.598	Panthera_pardus
ENSPSIG00000018050	XRN1	100	76.884	ENSPTIG00000021081	XRN1	100	77.055	Panthera_tigris_altaica
ENSPSIG00000018050	XRN1	100	76.743	ENSPTRG00000015482	XRN1	100	76.813	Pan_troglodytes
ENSPSIG00000018050	XRN1	100	77.042	ENSPANG00000010638	XRN1	100	76.927	Papio_anubis
ENSPSIG00000018050	XRN1	56	76.682	ENSPMGG00000002648	xrn1	98	76.995	Periophthalmus_magnuspinnatus
ENSPSIG00000018050	XRN1	55	86.888	ENSPEMG00000020610	Xrn1	99	87.163	Peromyscus_maniculatus_bairdii
ENSPSIG00000018050	XRN1	63	52.064	ENSPMAG00000002975	xrn1	90	78.223	Petromyzon_marinus
ENSPSIG00000018050	XRN1	98	82.605	ENSPCIG00000028735	XRN1	99	89.382	Phascolarctos_cinereus
ENSPSIG00000018050	XRN1	91	63.891	ENSPFOG00000013932	xrn1	99	63.811	Poecilia_formosa
ENSPSIG00000018050	XRN1	91	64.027	ENSPLAG00000021653	xrn1	99	63.948	Poecilia_latipinna
ENSPSIG00000018050	XRN1	89	64.127	ENSPMEG00000003076	xrn1	95	64.418	Poecilia_mexicana
ENSPSIG00000018050	XRN1	96	69.429	ENSPREG00000021147	xrn1	99	69.333	Poecilia_reticulata
ENSPSIG00000018050	XRN1	100	76.077	ENSPPYG00000014172	XRN1	100	76.020	Pongo_abelii
ENSPSIG00000018050	XRN1	88	72.603	ENSPCAG00000005638	XRN1	96	72.603	Procavia_capensis
ENSPSIG00000018050	XRN1	100	77.213	ENSPCOG00000013089	XRN1	99	87.639	Propithecus_coquereli
ENSPSIG00000018050	XRN1	96	82.642	ENSPVAG00000016265	XRN1	96	82.642	Pteropus_vampyrus
ENSPSIG00000018050	XRN1	94	70.690	ENSPNYG00000010570	xrn1	99	69.907	Pundamilia_nyererei
ENSPSIG00000018050	XRN1	100	59.600	ENSPNAG00000023531	xrn1	100	59.413	Pygocentrus_nattereri
ENSPSIG00000018050	XRN1	100	75.314	ENSRNOG00000042951	Xrn1	100	75.200	Rattus_norvegicus
ENSPSIG00000018050	XRN1	100	76.642	ENSRBIG00000041227	XRN1	100	76.528	Rhinopithecus_bieti
ENSPSIG00000018050	XRN1	65	53.804	YGL173C	XRN1	72	53.804	Saccharomyces_cerevisiae
ENSPSIG00000018050	XRN1	100	76.870	ENSSBOG00000029561	XRN1	100	76.299	Saimiri_boliviensis_boliviensis
ENSPSIG00000018050	XRN1	99	78.344	ENSSHAG00000016207	XRN1	100	78.402	Sarcophilus_harrisii
ENSPSIG00000018050	XRN1	100	60.971	ENSSFOG00015024211	xrn1	100	60.914	Scleropages_formosus
ENSPSIG00000018050	XRN1	100	65.767	ENSSMAG00000016534	xrn1	98	69.838	Scophthalmus_maximus
ENSPSIG00000018050	XRN1	88	71.337	ENSSDUG00000010306	xrn1	97	71.337	Seriola_dumerili
ENSPSIG00000018050	XRN1	98	66.643	ENSSLDG00000021543	xrn1	100	66.643	Seriola_lalandi_dorsalis
ENSPSIG00000018050	XRN1	65	77.938	ENSSARG00000007741	-	82	77.938	Sorex_araneus
ENSPSIG00000018050	XRN1	100	84.334	ENSTGUG00000008498	XRN1	100	84.563	Taeniopygia_guttata
ENSPSIG00000018050	XRN1	94	68.612	ENSTRUG00000004895	xrn1	96	77.495	Takifugu_rubripes
ENSPSIG00000018050	XRN1	100	58.041	ENSTNIG00000017615	xrn1	100	58.524	Tetraodon_nigroviridis
ENSPSIG00000018050	XRN1	85	90.591	ENSTBEG00000003256	XRN1	89	79.809	Tupaia_belangeri
ENSPSIG00000018050	XRN1	100	72.676	ENSTTRG00000012914	XRN1	100	72.789	Tursiops_truncatus
ENSPSIG00000018050	XRN1	100	76.142	ENSUAMG00000001608	XRN1	99	86.310	Ursus_americanus
ENSPSIG00000018050	XRN1	100	77.854	ENSUMAG00000013625	XRN1	100	77.968	Ursus_maritimus
ENSPSIG00000018050	XRN1	100	73.454	ENSVPAG00000004690	XRN1	100	73.568	Vicugna_pacos
ENSPSIG00000018050	XRN1	100	77.898	ENSVVUG00000024461	XRN1	99	88.114	Vulpes_vulpes
ENSPSIG00000018050	XRN1	100	68.356	ENSXETG00000000619	xrn1	97	87.668	Xenopus_tropicalis
ENSPSIG00000018050	XRN1	93	71.729	ENSXCOG00000007917	xrn1	96	71.971	Xiphophorus_couchianus
ENSPSIG00000018050	XRN1	90	71.486	ENSXMAG00000018320	xrn1	98	71.729	Xiphophorus_maculatus