EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTIG00000001480 (Gene tree)
Gene ID: 102967044
Gene Symbol: PABPC5
Alias: -
Full Name: poly(A) binding protein cytoplasmic 5
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Plus strand
Length: 1149 bases
Position: chrKE721825.1:1138418-1139566
Accession: 102967044
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000000568	RRM_5	PF13893.6	1.3e-11	1	2
ENSPTIP00000000568	RRM_5	PF13893.6	1.3e-11	2	2
ENSPTIP00000000568	RRM_1	PF00076.22	2.1e-79	1	4
ENSPTIP00000000568	RRM_1	PF00076.22	2.1e-79	2	4
ENSPTIP00000000568	RRM_1	PF00076.22	2.1e-79	3	4
ENSPTIP00000000568	RRM_1	PF00076.22	2.1e-79	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000001586	PABPC5-201	1149	XM_007085588	ENSPTIP00000000568	382 (aa)	XP_007085650	UPI000298D99B

Gene Model

Click here to download ENSPTIG00000001480's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptg03013	RNA transport	KEGG
ptg03015	mRNA surveillance pathway	KEGG
ptg03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000001480's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTIG00000001480	PABPC5	96	67.769	ENSPTIG00000005829	PABPC4	58	67.978
ENSPTIG00000001480	PABPC5	96	30.508	ENSPTIG00000016677	TRNAU1AP	62	30.061
ENSPTIG00000001480	PABPC5	96	60.606	ENSPTIG00000006524	PABPC1L	63	60.674
ENSPTIG00000001480	PABPC5	96	63.736	ENSPTIG00000010106	PABPC4L	98	63.764
ENSPTIG00000001480	PABPC5	94	35.802	ENSPTIG00000005627	ELAVL2	89	35.802
ENSPTIG00000001480	PABPC5	95	65.161	ENSPTIG00000021083	PABPC1	63	65.161

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000001480	PABPC5	99	97.113	ENSG00000174740	PABPC5	99	97.113	Homo_sapiens
ENSPTIG00000001480	PABPC5	99	99.213	ENSAMEG00000020114	PABPC5	100	99.213	Ailuropoda_melanoleuca
ENSPTIG00000001480	PABPC5	99	97.113	ENSANAG00000005063	PABPC5	99	97.113	Aotus_nancymaae
ENSPTIG00000001480	PABPC5	100	96.597	ENSBTAG00000019942	PABPC5	100	96.597	Bos_taurus
ENSPTIG00000001480	PABPC5	99	96.588	ENSCJAG00000003665	PABPC5	99	96.588	Callithrix_jacchus
ENSPTIG00000001480	PABPC5	100	99.215	ENSCAFG00000017452	PABPC5	100	99.215	Canis_familiaris
ENSPTIG00000001480	PABPC5	100	96.597	ENSCHIG00000019004	PABPC5	100	96.597	Capra_hircus
ENSPTIG00000001480	PABPC5	100	96.597	ENSTSYG00000036351	PABPC5	100	96.597	Carlito_syrichta
ENSPTIG00000001480	PABPC5	99	90.110	ENSCAPG00000010714	PABPC5	100	90.110	Cavia_aperea
ENSPTIG00000001480	PABPC5	100	93.717	ENSCPOG00000002555	PABPC5	100	93.717	Cavia_porcellus
ENSPTIG00000001480	PABPC5	99	97.113	ENSCCAG00000032154	PABPC5	99	97.113	Cebus_capucinus
ENSPTIG00000001480	PABPC5	99	97.113	ENSCATG00000043083	PABPC5	99	97.113	Cercocebus_atys
ENSPTIG00000001480	PABPC5	100	95.026	ENSCLAG00000000647	PABPC5	100	95.026	Chinchilla_lanigera
ENSPTIG00000001480	PABPC5	99	97.113	ENSCSAG00000000065	PABPC5	99	97.113	Chlorocebus_sabaeus
ENSPTIG00000001480	PABPC5	99	97.113	ENSCANG00000011473	PABPC5	99	97.113	Colobus_angolensis_palliatus
ENSPTIG00000001480	PABPC5	100	93.455	ENSCGRG00000018699	Pabpc5	100	93.455	Cricetulus_griseus_crigri
ENSPTIG00000001480	PABPC5	100	78.329	ENSETEG00000011832	PABPC5	100	78.329	Echinops_telfairi
ENSPTIG00000001480	PABPC5	100	97.906	ENSEASG00005014396	PABPC5	100	97.906	Equus_asinus_asinus
ENSPTIG00000001480	PABPC5	100	97.906	ENSECAG00000003452	PABPC5	100	97.906	Equus_caballus
ENSPTIG00000001480	PABPC5	100	100.000	ENSFCAG00000004998	PABPC5	100	100.000	Felis_catus
ENSPTIG00000001480	PABPC5	100	96.073	ENSFDAG00000000126	PABPC5	100	96.073	Fukomys_damarensis
ENSPTIG00000001480	PABPC5	99	97.113	ENSGGOG00000007622	PABPC5	99	97.113	Gorilla_gorilla
ENSPTIG00000001480	PABPC5	95	95.872	ENSJJAG00000011960	Pabpc5	100	95.872	Jaculus_jaculus
ENSPTIG00000001480	PABPC5	99	97.113	ENSMFAG00000024561	PABPC5	99	97.113	Macaca_fascicularis
ENSPTIG00000001480	PABPC5	99	97.113	ENSMMUG00000011562	PABPC5	99	97.113	Macaca_mulatta
ENSPTIG00000001480	PABPC5	99	97.113	ENSMNEG00000037604	PABPC5	99	97.113	Macaca_nemestrina
ENSPTIG00000001480	PABPC5	99	97.113	ENSMLEG00000028318	PABPC5	99	97.113	Mandrillus_leucophaeus
ENSPTIG00000001480	PABPC5	100	96.073	ENSMICG00000041706	PABPC5	100	96.073	Microcebus_murinus
ENSPTIG00000001480	PABPC5	100	95.288	ENSMOCG00000001554	Pabpc5	100	95.288	Microtus_ochrogaster
ENSPTIG00000001480	PABPC5	99	93.158	MGP_CAROLIEiJ_G0033367	Pabpc5	99	93.158	Mus_caroli
ENSPTIG00000001480	PABPC5	99	93.684	ENSMUSG00000034732	Pabpc5	99	93.684	Mus_musculus
ENSPTIG00000001480	PABPC5	100	93.979	MGP_PahariEiJ_G0031908	Pabpc5	100	93.979	Mus_pahari
ENSPTIG00000001480	PABPC5	99	93.684	MGP_SPRETEiJ_G0034533	Pabpc5	99	93.684	Mus_spretus
ENSPTIG00000001480	PABPC5	100	98.691	ENSMPUG00000018465	PABPC5	100	98.691	Mustela_putorius_furo
ENSPTIG00000001480	PABPC5	100	96.335	ENSMLUG00000008244	PABPC5	100	96.335	Myotis_lucifugus
ENSPTIG00000001480	PABPC5	95	94.954	ENSNGAG00000004371	Pabpc5	100	94.954	Nannospalax_galili
ENSPTIG00000001480	PABPC5	99	97.113	ENSNLEG00000035086	PABPC5	99	97.113	Nomascus_leucogenys
ENSPTIG00000001480	PABPC5	98	97.727	ENSOPRG00000000856	PABPC5	99	97.727	Ochotona_princeps
ENSPTIG00000001480	PABPC5	100	96.859	ENSOCUG00000010919	PABPC5	100	96.859	Oryctolagus_cuniculus
ENSPTIG00000001480	PABPC5	100	96.335	ENSOGAG00000006882	PABPC5	100	96.335	Otolemur_garnettii
ENSPTIG00000001480	PABPC5	100	96.859	ENSOARG00000010260	PABPC5	100	96.859	Ovis_aries
ENSPTIG00000001480	PABPC5	99	96.850	ENSPPAG00000007378	PABPC5	99	96.850	Pan_paniscus
ENSPTIG00000001480	PABPC5	100	100.000	ENSPPRG00000010742	PABPC5	100	100.000	Panthera_pardus
ENSPTIG00000001480	PABPC5	99	97.113	ENSPTRG00000022078	PABPC5	99	97.113	Pan_troglodytes
ENSPTIG00000001480	PABPC5	99	97.113	ENSPANG00000018282	PABPC5	99	97.113	Papio_anubis
ENSPTIG00000001480	PABPC5	100	94.241	ENSPEMG00000000171	Pabpc5	100	94.241	Peromyscus_maniculatus_bairdii
ENSPTIG00000001480	PABPC5	99	97.113	ENSPPYG00000020526	PABPC5	99	97.113	Pongo_abelii
ENSPTIG00000001480	PABPC5	99	96.727	ENSPCAG00000015577	PABPC5	100	96.727	Procavia_capensis
ENSPTIG00000001480	PABPC5	100	96.859	ENSPCOG00000000676	PABPC5	100	96.859	Propithecus_coquereli
ENSPTIG00000001480	PABPC5	100	97.644	ENSPVAG00000006465	PABPC5	100	97.644	Pteropus_vampyrus
ENSPTIG00000001480	PABPC5	100	93.979	ENSRNOG00000003354	Pabpc5	100	93.979	Rattus_norvegicus
ENSPTIG00000001480	PABPC5	99	97.113	ENSRBIG00000011760	PABPC5	99	97.113	Rhinopithecus_bieti
ENSPTIG00000001480	PABPC5	99	97.113	ENSRROG00000036708	PABPC5	99	97.113	Rhinopithecus_roxellana
ENSPTIG00000001480	PABPC5	99	97.113	ENSSBOG00000008658	PABPC5	99	97.113	Saimiri_boliviensis_boliviensis
ENSPTIG00000001480	PABPC5	100	94.503	ENSSARG00000014012	PABPC5	100	94.503	Sorex_araneus
ENSPTIG00000001480	PABPC5	100	97.382	ENSSSCG00000040194	PABPC5	100	97.382	Sus_scrofa
ENSPTIG00000001480	PABPC5	100	97.644	ENSTBEG00000016482	PABPC5	100	97.644	Tupaia_belangeri
ENSPTIG00000001480	PABPC5	100	99.215	ENSUAMG00000013627	PABPC5	100	99.215	Ursus_americanus
ENSPTIG00000001480	PABPC5	100	98.953	ENSUMAG00000023934	PABPC5	100	98.953	Ursus_maritimus
ENSPTIG00000001480	PABPC5	100	97.382	ENSVPAG00000001063	PABPC5	100	97.382	Vicugna_pacos
ENSPTIG00000001480	PABPC5	100	99.476	ENSVVUG00000013172	PABPC5	100	99.476	Vulpes_vulpes