EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPTIG00000003920 (Gene tree)
Gene ID
102952910
Gene Symbol
CPSF3
Alias
-
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Panthera_tigris_altaica
Status
putative
Strand
Plus strand
Length
43901 bases
Position
chrKE722332.1:5445918-5489818
Accession
102952910
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPTIP00000001532CPSF73-100_CPF11718.81.7e-5511
ENSPTIP00000001527CPSF73-100_CPF11718.82e-5511
ENSPTIP00000001532Beta-CaspPF10996.84e-3411
ENSPTIP00000001527Beta-CaspPF10996.84.6e-3411
ENSPTIP00000001527Lactamase_BPF00753.271e-1811
ENSPTIP00000001532Lactamase_BPF00753.279.6e-1411
ENSPTIP00000001532RMMBLPF07521.121.3e-2111
ENSPTIP00000001527RMMBLPF07521.121.5e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPTIT00000004328CPSF3-2012418-ENSPTIP00000001527684 (aa)--
ENSPTIT00000004350CPSF3-2023610XM_007098231ENSPTIP00000001532635 (aa)XP_007098293-
Gene Model
Click here to download ENSPTIG00000003920's gene model file
Pathways
Pathway IDPathway NameSource
ptg03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000003920's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPTIG00000003920CPSF37038.277ENSPTIG00000019834INTS118040.602
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPTIG00000003920CPSF310099.213ENSG00000119203CPSF3100100.000Homo_sapiens
ENSPTIG00000003920CPSF37397.189ENSAPOG00000012241CPSF39096.982Acanthochromis_polyacanthus
ENSPTIG00000003920CPSF39985.693ENSAPOG00000022087cpsf39885.546Acanthochromis_polyacanthus
ENSPTIG00000003920CPSF310099.528ENSAMEG00000008493CPSF39999.559Ailuropoda_melanoleuca
ENSPTIG00000003920CPSF39983.121ENSACIG00000009846cpsf39982.962Amphilophus_citrinellus
ENSPTIG00000003920CPSF39986.825ENSACIG00000023663CPSF39986.825Amphilophus_citrinellus
ENSPTIG00000003920CPSF39985.693ENSAOCG00000022056cpsf39391.312Amphiprion_ocellaris
ENSPTIG00000003920CPSF39988.365ENSAOCG00000010077CPSF39888.365Amphiprion_ocellaris
ENSPTIG00000003920CPSF39988.365ENSAPEG00000021167CPSF39888.365Amphiprion_percula
ENSPTIG00000003920CPSF39985.841ENSAPEG00000019526cpsf39786.862Amphiprion_percula
ENSPTIG00000003920CPSF39985.841ENSATEG00000003959cpsf39885.693Anabas_testudineus
ENSPTIG00000003920CPSF39983.652ENSATEG00000014525CPSF39883.652Anabas_testudineus
ENSPTIG00000003920CPSF310095.433ENSAPLG00000006941CPSF39895.238Anas_platyrhynchos
ENSPTIG00000003920CPSF39992.441ENSACAG00000001759CPSF39992.126Anolis_carolinensis
ENSPTIG00000003920CPSF310092.756ENSANAG00000031254CPSF39993.114Aotus_nancymaae
ENSPTIG00000003920CPSF39985.308ENSACLG00000014484cpsf39985.865Astatotilapia_calliptera
ENSPTIG00000003920CPSF39986.667ENSACLG00000018846CPSF39986.667Astatotilapia_calliptera
ENSPTIG00000003920CPSF39988.218ENSAMXG00000004786cpsf39888.218Astyanax_mexicanus
ENSPTIG00000003920CPSF310099.685ENSBTAG00000019735CPSF39999.706Bos_taurus
ENSPTIG00000003920CPSF39159.213WBGene00013460cpsf-38959.213Caenorhabditis_elegans
ENSPTIG00000003920CPSF310098.898ENSCJAG00000006276CPSF39998.971Callithrix_jacchus
ENSPTIG00000003920CPSF310099.528ENSCAFG00000003375CPSF39599.559Canis_familiaris
ENSPTIG00000003920CPSF390100.000ENSCAFG00020026799CPSF399100.000Canis_lupus_dingo
ENSPTIG00000003920CPSF310099.685ENSCHIG00000013973CPSF39999.706Capra_hircus
ENSPTIG00000003920CPSF310099.213ENSTSYG00000002967CPSF39999.265Carlito_syrichta
ENSPTIG00000003920CPSF310097.638ENSCAPG00000013851CPSF310097.751Cavia_aperea
ENSPTIG00000003920CPSF310097.638ENSCPOG00000011299CPSF39997.794Cavia_porcellus
ENSPTIG00000003920CPSF310099.055ENSCCAG00000036730CPSF39999.118Cebus_capucinus
ENSPTIG00000003920CPSF310096.384ENSCATG00000014770CPSF399100.000Cercocebus_atys
ENSPTIG00000003920CPSF310097.165ENSCLAG00000002727CPSF39997.353Chinchilla_lanigera
ENSPTIG00000003920CPSF310090.866ENSCSAG00000007125CPSF39991.471Chlorocebus_sabaeus
ENSPTIG00000003920CPSF386100.000ENSCHOG00000000180CPSF38571.930Choloepus_hoffmanni
ENSPTIG00000003920CPSF39995.876ENSCPBG00000014074CPSF39895.876Chrysemys_picta_bellii
ENSPTIG00000003920CPSF39968.029ENSCING00000007214-9867.883Ciona_intestinalis
ENSPTIG00000003920CPSF310085.039ENSCANG00000034435CPSF39986.029Colobus_angolensis_palliatus
ENSPTIG00000003920CPSF310098.583ENSCGRG00001013134Cpsf39998.676Cricetulus_griseus_chok1gshd
ENSPTIG00000003920CPSF310098.583ENSCGRG00000018319Cpsf39998.676Cricetulus_griseus_crigri
ENSPTIG00000003920CPSF39987.059ENSCSEG00000002021CPSF39986.399Cynoglossus_semilaevis
ENSPTIG00000003920CPSF35072.013ENSCVAG00000022039-9471.698Cyprinodon_variegatus
ENSPTIG00000003920CPSF39988.660ENSCVAG00000015067CPSF39888.660Cyprinodon_variegatus
ENSPTIG00000003920CPSF39989.249ENSDARG00000027649cpsf39889.249Danio_rerio
ENSPTIG00000003920CPSF310097.799ENSDNOG00000008940CPSF39597.944Dasypus_novemcinctus
ENSPTIG00000003920CPSF39599.073ENSDORG00000014263Cpsf39999.073Dipodomys_ordii
ENSPTIG00000003920CPSF39967.552FBgn0261065Cpsf739867.404Drosophila_melanogaster
ENSPTIG00000003920CPSF39588.040ENSETEG00000003893CPSF39985.626Echinops_telfairi
ENSPTIG00000003920CPSF39978.653ENSEBUG00000009018cpsf39878.367Eptatretus_burgeri
ENSPTIG00000003920CPSF310099.528ENSEASG00005003970CPSF39999.559Equus_asinus_asinus
ENSPTIG00000003920CPSF310099.528ENSECAG00000019911CPSF39999.559Equus_caballus
ENSPTIG00000003920CPSF39983.676ENSEEUG00000015422CPSF39983.676Erinaceus_europaeus
ENSPTIG00000003920CPSF39988.496ENSELUG00000013775cpsf39888.496Esox_lucius
ENSPTIG00000003920CPSF310099.685ENSFCAG00000007852CPSF310099.691Felis_catus
ENSPTIG00000003920CPSF310094.961ENSFALG00000006572CPSF310095.054Ficedula_albicollis
ENSPTIG00000003920CPSF39997.198ENSFDAG00000006317CPSF39897.198Fukomys_damarensis
ENSPTIG00000003920CPSF36468.537ENSFHEG00000012186CPSF39968.537Fundulus_heteroclitus
ENSPTIG00000003920CPSF39985.251ENSFHEG00000014774cpsf39885.103Fundulus_heteroclitus
ENSPTIG00000003920CPSF39986.598ENSGMOG00000003157cpsf39886.303Gadus_morhua
ENSPTIG00000003920CPSF310094.488ENSGALG00000016424CPSF39994.488Gallus_gallus
ENSPTIG00000003920CPSF39988.496ENSGAFG00000008016CPSF39888.496Gambusia_affinis
ENSPTIG00000003920CPSF39982.989ENSGAFG00000019449cpsf39982.830Gambusia_affinis
ENSPTIG00000003920CPSF37493.576ENSGAGG00000025583CPSF39393.576Gopherus_agassizii
ENSPTIG00000003920CPSF310099.370ENSGGOG00000001757CPSF310099.370Gorilla_gorilla
ENSPTIG00000003920CPSF39986.283ENSHBUG00000001188cpsf39886.136Haplochromis_burtoni
ENSPTIG00000003920CPSF36481.975ENSHBUG00000014332CPSF39981.975Haplochromis_burtoni
ENSPTIG00000003920CPSF310096.378ENSHGLG00000000666CPSF39996.618Heterocephalus_glaber_female
ENSPTIG00000003920CPSF310096.378ENSHGLG00100007765CPSF39996.618Heterocephalus_glaber_male
ENSPTIG00000003920CPSF39985.272ENSHCOG00000007251cpsf39885.125Hippocampus_comes
ENSPTIG00000003920CPSF39986.598ENSHCOG00000015957CPSF39786.598Hippocampus_comes
ENSPTIG00000003920CPSF39987.040ENSIPUG00000023488cpsf39887.040Ictalurus_punctatus
ENSPTIG00000003920CPSF310098.898ENSSTOG00000004476CPSF39998.971Ictidomys_tridecemlineatus
ENSPTIG00000003920CPSF310097.638ENSJJAG00000023415Cpsf39997.794Jaculus_jaculus
ENSPTIG00000003920CPSF39987.923ENSKMAG00000007317CPSF39887.923Kryptolebias_marmoratus
ENSPTIG00000003920CPSF39985.103ENSKMAG00000002806cpsf39884.956Kryptolebias_marmoratus
ENSPTIG00000003920CPSF39589.490ENSLBEG00000013492CPSF39889.490Labrus_bergylta
ENSPTIG00000003920CPSF35980.161ENSLBEG00000015018-9980.161Labrus_bergylta
ENSPTIG00000003920CPSF39979.676ENSLBEG00000020569cpsf39478.909Labrus_bergylta
ENSPTIG00000003920CPSF39983.628ENSLACG00000008308CPSF39883.628Latimeria_chalumnae
ENSPTIG00000003920CPSF39989.412ENSLOCG00000016823cpsf39889.412Lepisosteus_oculatus
ENSPTIG00000003920CPSF310099.055ENSLAFG00000009467CPSF310097.794Loxodonta_africana
ENSPTIG00000003920CPSF310099.213ENSMFAG00000001339CPSF39999.265Macaca_fascicularis
ENSPTIG00000003920CPSF310099.213ENSMMUG00000018038CPSF310099.227Macaca_mulatta
ENSPTIG00000003920CPSF310087.717ENSMNEG00000039447CPSF39986.471Macaca_nemestrina
ENSPTIG00000003920CPSF310099.370ENSMLEG00000026825CPSF39999.412Mandrillus_leucophaeus
ENSPTIG00000003920CPSF39986.136ENSMAMG00000003076cpsf39885.988Mastacembelus_armatus
ENSPTIG00000003920CPSF39985.443ENSMAMG00000008835CPSF39985.443Mastacembelus_armatus
ENSPTIG00000003920CPSF39986.283ENSMZEG00005014358cpsf39886.136Maylandia_zebra
ENSPTIG00000003920CPSF39988.954ENSMZEG00005006258CPSF39888.954Maylandia_zebra
ENSPTIG00000003920CPSF310094.646ENSMGAG00000013995CPSF310094.903Meleagris_gallopavo
ENSPTIG00000003920CPSF35996.809ENSMAUG00000000166Cpsf310096.809Mesocricetus_auratus
ENSPTIG00000003920CPSF310093.228ENSMICG00000002363CPSF310093.125Microcebus_murinus
ENSPTIG00000003920CPSF310093.543ENSMOCG00000020067Cpsf39993.971Microtus_ochrogaster
ENSPTIG00000003920CPSF37877.857ENSMMOG00000011923CPSF38477.857Mola_mola
ENSPTIG00000003920CPSF39981.991ENSMMOG00000018212CPSF39882.171Mola_mola
ENSPTIG00000003920CPSF310095.794ENSMODG00000014703CPSF39996.070Monodelphis_domestica
ENSPTIG00000003920CPSF39983.438ENSMALG00000011474CPSF39983.594Monopterus_albus
ENSPTIG00000003920CPSF39986.578ENSMALG00000016416cpsf39886.431Monopterus_albus
ENSPTIG00000003920CPSF310098.268MGP_CAROLIEiJ_G0017640Cpsf39998.382Mus_caroli
ENSPTIG00000003920CPSF310098.268ENSMUSG00000054309Cpsf39998.382Mus_musculus
ENSPTIG00000003920CPSF310098.110MGP_PahariEiJ_G0029397Cpsf39998.235Mus_pahari
ENSPTIG00000003920CPSF310098.268MGP_SPRETEiJ_G0018481Cpsf39998.382Mus_spretus
ENSPTIG00000003920CPSF310098.898ENSMPUG00000013213CPSF39998.971Mustela_putorius_furo
ENSPTIG00000003920CPSF310098.270ENSMLUG00000010636CPSF39998.385Myotis_lucifugus
ENSPTIG00000003920CPSF310098.425ENSNGAG00000019836Cpsf39998.529Nannospalax_galili
ENSPTIG00000003920CPSF39985.841ENSNBRG00000004770cpsf39885.693Neolamprologus_brichardi
ENSPTIG00000003920CPSF39986.667ENSNBRG00000010525CPSF39986.667Neolamprologus_brichardi
ENSPTIG00000003920CPSF310099.213ENSNLEG00000013359CPSF310099.227Nomascus_leucogenys
ENSPTIG00000003920CPSF310066.142ENSMEUG00000013117-9965.294Notamacropus_eugenii
ENSPTIG00000003920CPSF310089.134ENSOPRG00000008902CPSF39989.853Ochotona_princeps
ENSPTIG00000003920CPSF310096.693ENSODEG00000003129CPSF39996.912Octodon_degus
ENSPTIG00000003920CPSF39986.431ENSONIG00000018812cpsf39886.283Oreochromis_niloticus
ENSPTIG00000003920CPSF38996.454ENSOANG00000008577CPSF310096.454Ornithorhynchus_anatinus
ENSPTIG00000003920CPSF310099.055ENSOCUG00000003728CPSF39999.118Oryctolagus_cuniculus
ENSPTIG00000003920CPSF39984.218ENSORLG00000018854cpsf39884.071Oryzias_latipes
ENSPTIG00000003920CPSF39984.071ENSORLG00020013331cpsf39883.923Oryzias_latipes_hni
ENSPTIG00000003920CPSF39984.218ENSORLG00015011017cpsf39884.071Oryzias_latipes_hsok
ENSPTIG00000003920CPSF39984.071ENSOMEG00000010647cpsf39483.923Oryzias_melastigma
ENSPTIG00000003920CPSF310088.346ENSOGAG00000001680CPSF39989.118Otolemur_garnettii
ENSPTIG00000003920CPSF310099.685ENSOARG00000015073CPSF39999.706Ovis_aries
ENSPTIG00000003920CPSF310099.370ENSPPAG00000042457CPSF39999.412Pan_paniscus
ENSPTIG00000003920CPSF3100100.000ENSPPRG00000016790CPSF3100100.000Panthera_pardus
ENSPTIG00000003920CPSF310099.370ENSPTRG00000011638CPSF39999.412Pan_troglodytes
ENSPTIG00000003920CPSF310099.055ENSPANG00000016798CPSF39999.118Papio_anubis
ENSPTIG00000003920CPSF39989.971ENSPKIG00000023646cpsf39989.457Paramormyrops_kingsleyae
ENSPTIG00000003920CPSF310094.488ENSPSIG00000016144CPSF39993.833Pelodiscus_sinensis
ENSPTIG00000003920CPSF36479.506ENSPMGG00000015311CPSF39979.506Periophthalmus_magnuspinnatus
ENSPTIG00000003920CPSF38787.500ENSPMGG00000006141-9587.500Periophthalmus_magnuspinnatus
ENSPTIG00000003920CPSF310098.268ENSPEMG00000017668Cpsf39998.382Peromyscus_maniculatus_bairdii
ENSPTIG00000003920CPSF37890.824ENSPMAG00000004841cpsf39890.824Petromyzon_marinus
ENSPTIG00000003920CPSF310097.795ENSPCIG00000009823CPSF39898.160Phascolarctos_cinereus
ENSPTIG00000003920CPSF39988.053ENSPFOG00000010418-9888.053Poecilia_formosa
ENSPTIG00000003920CPSF39985.272ENSPFOG00000015922cpsf39885.125Poecilia_formosa
ENSPTIG00000003920CPSF39985.272ENSPLAG00000000882cpsf39885.125Poecilia_latipinna
ENSPTIG00000003920CPSF36481.188ENSPLAG00000021300-9981.188Poecilia_latipinna
ENSPTIG00000003920CPSF39985.420ENSPMEG00000018309cpsf39885.272Poecilia_mexicana
ENSPTIG00000003920CPSF39982.891ENSPREG00000004482CPSF39882.891Poecilia_reticulata
ENSPTIG00000003920CPSF39982.512ENSPREG00000014875cpsf39982.353Poecilia_reticulata
ENSPTIG00000003920CPSF310094.488ENSPPYG00000012666CPSF39994.853Pongo_abelii
ENSPTIG00000003920CPSF39564.784ENSPCAG00000015042CPSF39963.988Procavia_capensis
ENSPTIG00000003920CPSF38792.086ENSPCOG00000023016CPSF39792.086Propithecus_coquereli
ENSPTIG00000003920CPSF39999.263ENSPVAG00000005324CPSF39999.263Pteropus_vampyrus
ENSPTIG00000003920CPSF38591.529ENSPNYG00000021047CPSF39191.529Pundamilia_nyererei
ENSPTIG00000003920CPSF39986.283ENSPNYG00000004405cpsf39886.136Pundamilia_nyererei
ENSPTIG00000003920CPSF39987.482ENSPNAG00000023060cpsf39887.482Pygocentrus_nattereri
ENSPTIG00000003920CPSF39998.378ENSRNOG00000052418Cpsf39998.378Rattus_norvegicus
ENSPTIG00000003920CPSF310094.803ENSRBIG00000041615CPSF39994.745Rhinopithecus_bieti
ENSPTIG00000003920CPSF310099.370ENSRROG00000033792CPSF39999.412Rhinopithecus_roxellana
ENSPTIG00000003920CPSF39540.000YLR277CYSH18443.531Saccharomyces_cerevisiae
ENSPTIG00000003920CPSF310094.523ENSSBOG00000027263CPSF39794.784Saimiri_boliviensis_boliviensis
ENSPTIG00000003920CPSF310097.638ENSSHAG00000007024CPSF39997.794Sarcophilus_harrisii
ENSPTIG00000003920CPSF39989.823ENSSFOG00015002108cpsf39989.100Scleropages_formosus
ENSPTIG00000003920CPSF39588.099ENSSMAG00000020534CPSF39588.099Scophthalmus_maximus
ENSPTIG00000003920CPSF39986.431ENSSDUG00000002828cpsf39686.283Seriola_dumerili
ENSPTIG00000003920CPSF39988.513ENSSDUG00000018498CPSF39888.513Seriola_dumerili
ENSPTIG00000003920CPSF39988.513ENSSLDG00000005234CPSF39888.513Seriola_lalandi_dorsalis
ENSPTIG00000003920CPSF39986.136ENSSLDG00000008469cpsf39191.312Seriola_lalandi_dorsalis
ENSPTIG00000003920CPSF39981.324ENSSARG00000005186CPSF39981.324Sorex_araneus
ENSPTIG00000003920CPSF310092.332ENSSPUG00000015525CPSF39792.697Sphenodon_punctatus
ENSPTIG00000003920CPSF39988.218ENSSPAG00000002906CPSF39888.218Stegastes_partitus
ENSPTIG00000003920CPSF39985.693ENSSPAG00000018579cpsf39885.546Stegastes_partitus
ENSPTIG00000003920CPSF39999.411ENSSSCG00000020799CPSF39999.411Sus_scrofa
ENSPTIG00000003920CPSF310094.803ENSTGUG00000013016CPSF39995.147Taeniopygia_guttata
ENSPTIG00000003920CPSF39985.398ENSTRUG00000007030cpsf39685.398Takifugu_rubripes
ENSPTIG00000003920CPSF36472.727ENSTRUG00000013905CPSF39972.346Takifugu_rubripes
ENSPTIG00000003920CPSF38593.629ENSTBEG00000002707CPSF38493.629Tupaia_belangeri
ENSPTIG00000003920CPSF38798.925ENSTTRG00000000861CPSF38798.925Tursiops_truncatus
ENSPTIG00000003920CPSF39996.755ENSUAMG00000007535CPSF39796.755Ursus_americanus
ENSPTIG00000003920CPSF310099.528ENSUMAG00000003676CPSF310099.536Ursus_maritimus
ENSPTIG00000003920CPSF39596.013ENSVPAG00000008041CPSF310096.215Vicugna_pacos
ENSPTIG00000003920CPSF310099.528ENSVVUG00000002194CPSF39999.559Vulpes_vulpes
ENSPTIG00000003920CPSF39989.971ENSXETG00000008263cpsf39889.971Xenopus_tropicalis
ENSPTIG00000003920CPSF35879.784ENSXCOG00000000957-8779.784Xiphophorus_couchianus
ENSPTIG00000003920CPSF39985.567ENSXCOG00000019695cpsf39885.420Xiphophorus_couchianus
ENSPTIG00000003920CPSF39985.272ENSXMAG00000009784cpsf39984.365Xiphophorus_maculatus
ENSPTIG00000003920CPSF39988.348ENSXMAG00000027291CPSF39888.348Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us