EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTIG00000005117 (Gene tree)
Gene ID: 102950891
Gene Symbol: -
Alias: -
Full Name: small nuclear ribonucleoprotein F-like
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Minus strand
Length: 255 bases
Position: chrKE721778.1:13218602-13218856
Accession: 102950891
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000002052	LSM	PF01423.22	3.7e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000005666	-	255	XM_015538027	ENSPTIP00000002052	84 (aa)	XP_015393513	UPI0007662E18

Gene Model

Click here to download ENSPTIG00000005117's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptg03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000005117's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTIG00000005117	-	79	40.909	ENSPTIG00000019769	LSM6	83	40.909
ENSPTIG00000005117	-	89	77.333	ENSPTIG00000007520	SNRPF	98	79.762

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000005117	-	89	77.333	ENSG00000139343	SNRPF	98	79.762	Homo_sapiens
ENSPTIG00000005117	-	88	74.324	ENSAPOG00000003377	snrpf	65	77.108	Acanthochromis_polyacanthus
ENSPTIG00000005117	-	90	67.105	ENSAMEG00000018718	-	98	70.238	Ailuropoda_melanoleuca
ENSPTIG00000005117	-	88	77.027	ENSAMEG00000002166	-	98	79.518	Ailuropoda_melanoleuca
ENSPTIG00000005117	-	87	73.973	ENSACIG00000013216	snrpf	96	76.829	Amphilophus_citrinellus
ENSPTIG00000005117	-	87	73.973	ENSAOCG00000015108	snrpf	96	76.829	Amphiprion_ocellaris
ENSPTIG00000005117	-	87	73.973	ENSAPEG00000022022	snrpf	96	76.829	Amphiprion_percula
ENSPTIG00000005117	-	87	73.973	ENSATEG00000022625	snrpf	88	76.829	Anabas_testudineus
ENSPTIG00000005117	-	88	77.027	ENSACAG00000014073	SNRPF	95	79.518	Anolis_carolinensis
ENSPTIG00000005117	-	85	70.423	ENSANAG00000020297	-	73	73.750	Aotus_nancymaae
ENSPTIG00000005117	-	89	77.333	ENSANAG00000032845	SNRPF	98	79.762	Aotus_nancymaae
ENSPTIG00000005117	-	89	50.667	ENSANAG00000025860	-	97	54.762	Aotus_nancymaae
ENSPTIG00000005117	-	87	73.973	ENSACLG00000016066	snrpf	96	76.829	Astatotilapia_calliptera
ENSPTIG00000005117	-	89	74.667	ENSAMXG00000007421	snrpf	98	77.381	Astyanax_mexicanus
ENSPTIG00000005117	-	93	74.359	ENSBTAG00000050012	-	93	73.333	Bos_taurus
ENSPTIG00000005117	-	89	77.333	ENSBTAG00000016271	SNRPF	98	79.762	Bos_taurus
ENSPTIG00000005117	-	92	58.442	WBGene00004918	snr-5	88	57.500	Caenorhabditis_elegans
ENSPTIG00000005117	-	89	77.333	ENSCJAG00000002705	-	98	79.762	Callithrix_jacchus
ENSPTIG00000005117	-	87	68.493	ENSCAFG00000031151	-	98	72.619	Canis_familiaris
ENSPTIG00000005117	-	89	77.333	ENSCAFG00000006395	-	76	79.762	Canis_familiaris
ENSPTIG00000005117	-	93	66.667	ENSCAFG00020013161	-	74	72.857	Canis_lupus_dingo
ENSPTIG00000005117	-	87	68.493	ENSCAFG00020010823	-	98	72.619	Canis_lupus_dingo
ENSPTIG00000005117	-	89	66.667	ENSTSYG00000030635	-	98	70.238	Carlito_syrichta
ENSPTIG00000005117	-	89	71.053	ENSTSYG00000036502	-	98	74.118	Carlito_syrichta
ENSPTIG00000005117	-	96	74.074	ENSTSYG00000031636	-	67	75.000	Carlito_syrichta
ENSPTIG00000005117	-	88	77.027	ENSCAPG00000007242	SNRPF	98	79.518	Cavia_aperea
ENSPTIG00000005117	-	89	77.333	ENSCPOG00000013898	SNRPF	98	79.762	Cavia_porcellus
ENSPTIG00000005117	-	87	76.712	ENSCCAG00000017356	-	98	78.571	Cebus_capucinus
ENSPTIG00000005117	-	100	69.048	ENSCCAG00000033627	-	66	69.048	Cebus_capucinus
ENSPTIG00000005117	-	89	77.333	ENSCCAG00000037378	-	98	79.762	Cebus_capucinus
ENSPTIG00000005117	-	89	77.333	ENSCLAG00000007200	SNRPF	98	79.762	Chinchilla_lanigera
ENSPTIG00000005117	-	89	77.333	ENSCSAG00000003602	-	68	79.762	Chlorocebus_sabaeus
ENSPTIG00000005117	-	75	76.190	ENSCHOG00000009392	SNRPF	98	76.190	Choloepus_hoffmanni
ENSPTIG00000005117	-	99	73.494	ENSCPBG00000024287	-	65	73.494	Chrysemys_picta_bellii
ENSPTIG00000005117	-	100	70.238	ENSCPBG00000026463	-	98	70.238	Chrysemys_picta_bellii
ENSPTIG00000005117	-	100	69.048	ENSCPBG00000001985	-	98	69.048	Chrysemys_picta_bellii
ENSPTIG00000005117	-	89	73.333	ENSCPBG00000006227	-	98	75.000	Chrysemys_picta_bellii
ENSPTIG00000005117	-	99	67.470	ENSCSAVG00000007498	-	94	67.470	Ciona_savignyi
ENSPTIG00000005117	-	89	73.333	ENSCGRG00001008965	-	65	76.190	Cricetulus_griseus_chok1gshd
ENSPTIG00000005117	-	89	77.333	ENSCGRG00001017100	-	98	79.762	Cricetulus_griseus_chok1gshd
ENSPTIG00000005117	-	89	77.333	ENSCGRG00000000336	-	98	79.762	Cricetulus_griseus_crigri
ENSPTIG00000005117	-	95	75.000	ENSCGRG00000018878	-	94	73.333	Cricetulus_griseus_crigri
ENSPTIG00000005117	-	89	73.333	ENSCSEG00000004748	snrpf	98	76.190	Cynoglossus_semilaevis
ENSPTIG00000005117	-	88	74.324	ENSCVAG00000000397	snrpf	66	77.108	Cyprinodon_variegatus
ENSPTIG00000005117	-	89	72.727	ENSDARG00000105037	snrpf	98	75.581	Danio_rerio
ENSPTIG00000005117	-	89	77.333	ENSDNOG00000043775	-	54	79.762	Dasypus_novemcinctus
ENSPTIG00000005117	-	89	76.000	ENSDNOG00000048989	-	75	78.571	Dasypus_novemcinctus
ENSPTIG00000005117	-	89	68.000	ENSDNOG00000049373	-	72	69.880	Dasypus_novemcinctus
ENSPTIG00000005117	-	89	64.000	ENSDORG00000029740	-	98	67.857	Dipodomys_ordii
ENSPTIG00000005117	-	86	69.444	ENSDORG00000025351	-	100	69.444	Dipodomys_ordii
ENSPTIG00000005117	-	98	60.976	FBgn0000426	SmF	93	60.976	Drosophila_melanogaster
ENSPTIG00000005117	-	89	77.333	ENSETEG00000001558	-	98	79.762	Echinops_telfairi
ENSPTIG00000005117	-	95	56.250	ENSEBUG00000001793	-	72	61.194	Eptatretus_burgeri
ENSPTIG00000005117	-	89	77.333	ENSECAG00000019817	SNRPF	68	79.762	Equus_caballus
ENSPTIG00000005117	-	88	77.027	ENSEEUG00000013509	SNRPF	98	79.518	Erinaceus_europaeus
ENSPTIG00000005117	-	100	75.000	ENSELUG00000007737	RUXF	97	75.000	Esox_lucius
ENSPTIG00000005117	-	89	73.333	ENSELUG00000003121	RUXF	98	76.190	Esox_lucius
ENSPTIG00000005117	-	89	77.333	ENSFCAG00000029966	-	98	79.762	Felis_catus
ENSPTIG00000005117	-	89	64.000	ENSFCAG00000021942	-	98	67.857	Felis_catus
ENSPTIG00000005117	-	100	98.810	ENSFCAG00000031148	-	77	98.810	Felis_catus
ENSPTIG00000005117	-	88	77.027	ENSFALG00000010799	SNRPF	97	79.518	Ficedula_albicollis
ENSPTIG00000005117	-	89	77.333	ENSFDAG00000002831	-	98	79.762	Fukomys_damarensis
ENSPTIG00000005117	-	88	74.324	ENSFHEG00000003240	snrpf	73	77.108	Fundulus_heteroclitus
ENSPTIG00000005117	-	88	74.324	ENSGMOG00000007741	snrpf	98	77.108	Gadus_morhua
ENSPTIG00000005117	-	89	77.333	ENSGALG00000011409	SNRPF	98	79.762	Gallus_gallus
ENSPTIG00000005117	-	87	73.973	ENSGAFG00000016187	snrpf	94	76.829	Gambusia_affinis
ENSPTIG00000005117	-	88	74.324	ENSGACG00000020055	snrpf	98	77.108	Gasterosteus_aculeatus
ENSPTIG00000005117	-	82	66.667	ENSGAGG00000014132	-	83	66.667	Gopherus_agassizii
ENSPTIG00000005117	-	69	74.138	ENSGAGG00000011163	-	96	74.138	Gopherus_agassizii
ENSPTIG00000005117	-	86	75.000	ENSGAGG00000012945	-	75	73.810	Gopherus_agassizii
ENSPTIG00000005117	-	77	72.308	ENSGAGG00000020974	-	55	72.308	Gopherus_agassizii
ENSPTIG00000005117	-	92	70.130	ENSGAGG00000022991	-	87	70.130	Gopherus_agassizii
ENSPTIG00000005117	-	89	77.333	ENSGGOG00000001127	-	98	79.762	Gorilla_gorilla
ENSPTIG00000005117	-	100	69.048	ENSGGOG00000039936	-	95	69.048	Gorilla_gorilla
ENSPTIG00000005117	-	94	62.025	ENSGGOG00000039564	-	90	60.000	Gorilla_gorilla
ENSPTIG00000005117	-	89	77.333	ENSHGLG00000009108	SNRPF	98	79.762	Heterocephalus_glaber_female
ENSPTIG00000005117	-	89	77.333	ENSHGLG00000021172	-	98	79.762	Heterocephalus_glaber_female
ENSPTIG00000005117	-	89	77.333	ENSHGLG00100019596	-	98	79.762	Heterocephalus_glaber_male
ENSPTIG00000005117	-	88	77.027	ENSHGLG00100008103	-	98	79.518	Heterocephalus_glaber_male
ENSPTIG00000005117	-	73	63.235	ENSHCOG00000018663	snrpf	53	63.235	Hippocampus_comes
ENSPTIG00000005117	-	89	74.667	ENSIPUG00000018994	snrpf	98	77.381	Ictalurus_punctatus
ENSPTIG00000005117	-	89	77.333	ENSSTOG00000010434	-	98	79.762	Ictidomys_tridecemlineatus
ENSPTIG00000005117	-	100	66.667	ENSJJAG00000004558	-	98	66.667	Jaculus_jaculus
ENSPTIG00000005117	-	77	70.769	ENSJJAG00000004828	-	97	70.769	Jaculus_jaculus
ENSPTIG00000005117	-	100	69.048	ENSJJAG00000010502	-	98	69.048	Jaculus_jaculus
ENSPTIG00000005117	-	89	77.333	ENSJJAG00000011272	-	98	79.762	Jaculus_jaculus
ENSPTIG00000005117	-	89	73.333	ENSKMAG00000013566	snrpf	98	76.190	Kryptolebias_marmoratus
ENSPTIG00000005117	-	89	73.333	ENSLBEG00000008800	snrpf	98	76.190	Labrus_bergylta
ENSPTIG00000005117	-	89	76.000	ENSLACG00000002456	-	72	78.571	Latimeria_chalumnae
ENSPTIG00000005117	-	89	73.333	ENSLOCG00000015744	snrpf	98	76.190	Lepisosteus_oculatus
ENSPTIG00000005117	-	88	77.027	ENSLAFG00000017426	SNRPF	97	79.518	Loxodonta_africana
ENSPTIG00000005117	-	87	72.603	ENSMAMG00000016593	snrpf	96	75.610	Mastacembelus_armatus
ENSPTIG00000005117	-	87	73.973	ENSMZEG00005014701	snrpf	96	76.829	Maylandia_zebra
ENSPTIG00000005117	-	87	76.712	ENSMGAG00000011453	-	74	79.268	Meleagris_gallopavo
ENSPTIG00000005117	-	75	76.190	ENSMAUG00000019737	-	97	79.167	Mesocricetus_auratus
ENSPTIG00000005117	-	89	72.000	ENSMAUG00000008799	-	98	75.000	Mesocricetus_auratus
ENSPTIG00000005117	-	75	76.190	ENSMAUG00000016909	-	97	79.167	Mesocricetus_auratus
ENSPTIG00000005117	-	96	58.025	ENSMAUG00000010289	-	93	58.025	Mesocricetus_auratus
ENSPTIG00000005117	-	89	77.333	ENSMICG00000012153	-	98	79.762	Microcebus_murinus
ENSPTIG00000005117	-	90	75.000	ENSMICG00000030494	-	67	77.381	Microcebus_murinus
ENSPTIG00000005117	-	89	77.333	ENSMOCG00000020437	Snrpf	98	79.762	Microtus_ochrogaster
ENSPTIG00000005117	-	79	63.636	ENSMOCG00000020220	-	97	64.935	Microtus_ochrogaster
ENSPTIG00000005117	-	89	65.333	ENSMOCG00000022166	-	90	67.470	Microtus_ochrogaster
ENSPTIG00000005117	-	88	74.324	ENSMMOG00000007127	snrpf	98	77.108	Mola_mola
ENSPTIG00000005117	-	89	77.333	ENSMODG00000008091	SNRPF	74	79.762	Monodelphis_domestica
ENSPTIG00000005117	-	87	73.973	ENSMALG00000012328	snrpf	96	76.829	Monopterus_albus
ENSPTIG00000005117	-	89	77.333	MGP_CAROLIEiJ_G0015735	-	98	79.762	Mus_caroli
ENSPTIG00000005117	-	89	77.333	ENSMUSG00000020018	Snrpf	98	79.762	Mus_musculus
ENSPTIG00000005117	-	89	77.333	MGP_PahariEiJ_G0031350	Snrpf	98	79.762	Mus_pahari
ENSPTIG00000005117	-	89	77.333	MGP_SPRETEiJ_G0016553	Snrpf	98	79.762	Mus_spretus
ENSPTIG00000005117	-	89	77.333	ENSMPUG00000007176	-	75	79.762	Mustela_putorius_furo
ENSPTIG00000005117	-	88	77.027	ENSMLUG00000013577	-	98	79.518	Myotis_lucifugus
ENSPTIG00000005117	-	89	77.333	ENSMLUG00000027932	-	79	79.762	Myotis_lucifugus
ENSPTIG00000005117	-	89	77.333	ENSMLUG00000029201	-	79	79.762	Myotis_lucifugus
ENSPTIG00000005117	-	100	65.476	ENSMLUG00000026269	-	79	65.476	Myotis_lucifugus
ENSPTIG00000005117	-	89	77.333	ENSMLUG00000026149	-	79	79.762	Myotis_lucifugus
ENSPTIG00000005117	-	75	68.254	ENSNGAG00000005851	-	71	66.667	Nannospalax_galili
ENSPTIG00000005117	-	89	77.333	ENSNGAG00000024292	-	98	79.762	Nannospalax_galili
ENSPTIG00000005117	-	88	74.324	ENSNBRG00000011682	snrpf	85	77.108	Neolamprologus_brichardi
ENSPTIG00000005117	-	88	59.459	ENSMEUG00000000671	SNRPF	98	63.855	Notamacropus_eugenii
ENSPTIG00000005117	-	89	77.333	ENSODEG00000010328	-	98	79.762	Octodon_degus
ENSPTIG00000005117	-	89	76.000	ENSOCUG00000010925	SNRPF	74	78.571	Oryctolagus_cuniculus
ENSPTIG00000005117	-	88	74.324	ENSORLG00020008216	snrpf	98	77.108	Oryzias_latipes_hni
ENSPTIG00000005117	-	88	74.324	ENSORLG00015007418	snrpf	98	77.108	Oryzias_latipes_hsok
ENSPTIG00000005117	-	87	73.973	ENSOMEG00000003018	snrpf	96	76.829	Oryzias_melastigma
ENSPTIG00000005117	-	89	78.667	ENSOGAG00000030323	-	98	80.952	Otolemur_garnettii
ENSPTIG00000005117	-	89	77.333	ENSOARG00000011853	-	73	79.762	Ovis_aries
ENSPTIG00000005117	-	94	62.025	ENSPPAG00000037479	-	91	60.000	Pan_paniscus
ENSPTIG00000005117	-	100	69.048	ENSPPAG00000037544	-	95	69.048	Pan_paniscus
ENSPTIG00000005117	-	100	97.619	ENSPPRG00000007449	-	86	97.619	Panthera_pardus
ENSPTIG00000005117	-	89	77.333	ENSPPRG00000005875	-	98	79.762	Panthera_pardus
ENSPTIG00000005117	-	94	64.557	ENSPTRG00000047717	-	91	62.667	Pan_troglodytes
ENSPTIG00000005117	-	100	69.048	ENSPTRG00000043814	-	95	69.048	Pan_troglodytes
ENSPTIG00000005117	-	88	74.324	ENSPKIG00000014784	snrpf	91	77.108	Paramormyrops_kingsleyae
ENSPTIG00000005117	-	88	77.027	ENSPSIG00000016462	SNRPF	97	79.518	Pelodiscus_sinensis
ENSPTIG00000005117	-	88	74.324	ENSPMGG00000023548	snrpf	98	77.108	Periophthalmus_magnuspinnatus
ENSPTIG00000005117	-	89	77.333	ENSPEMG00000023326	Snrpf	98	79.762	Peromyscus_maniculatus_bairdii
ENSPTIG00000005117	-	87	73.973	ENSPLAG00000023932	snrpf	96	76.829	Poecilia_latipinna
ENSPTIG00000005117	-	87	73.973	ENSPMEG00000003377	snrpf	96	76.829	Poecilia_mexicana
ENSPTIG00000005117	-	87	73.973	ENSPREG00000022635	snrpf	94	76.829	Poecilia_reticulata
ENSPTIG00000005117	-	89	77.333	ENSPPYG00000004847	-	98	79.762	Pongo_abelii
ENSPTIG00000005117	-	89	77.333	ENSPCOG00000023833	-	98	79.762	Propithecus_coquereli
ENSPTIG00000005117	-	89	77.333	ENSPVAG00000009036	SNRPF	98	79.762	Pteropus_vampyrus
ENSPTIG00000005117	-	87	73.973	ENSPNYG00000021712	snrpf	96	76.829	Pundamilia_nyererei
ENSPTIG00000005117	-	87	73.973	ENSPNAG00000019117	snrpf	96	76.829	Pygocentrus_nattereri
ENSPTIG00000005117	-	89	77.333	ENSRNOG00000005556	Snrpf	98	79.762	Rattus_norvegicus
ENSPTIG00000005117	-	89	77.333	ENSRBIG00000030414	-	98	78.571	Rhinopithecus_bieti
ENSPTIG00000005117	-	89	77.333	ENSRROG00000021975	-	98	78.571	Rhinopithecus_roxellana
ENSPTIG00000005117	-	83	50.704	YPR182W	SMX3	83	50.704	Saccharomyces_cerevisiae
ENSPTIG00000005117	-	89	77.333	ENSSBOG00000036179	-	98	79.762	Saimiri_boliviensis_boliviensis
ENSPTIG00000005117	-	89	65.333	ENSSBOG00000032297	-	97	67.857	Saimiri_boliviensis_boliviensis
ENSPTIG00000005117	-	89	77.333	ENSSBOG00000012868	-	98	78.571	Saimiri_boliviensis_boliviensis
ENSPTIG00000005117	-	93	62.963	ENSSBOG00000027638	-	98	65.517	Saimiri_boliviensis_boliviensis
ENSPTIG00000005117	-	88	77.027	ENSSHAG00000012294	SNRPF	75	79.518	Sarcophilus_harrisii
ENSPTIG00000005117	-	74	72.581	ENSSFOG00015021523	snrpf	93	72.581	Scleropages_formosus
ENSPTIG00000005117	-	89	73.333	ENSSMAG00000005533	snrpf	97	76.190	Scophthalmus_maximus
ENSPTIG00000005117	-	76	71.875	ENSSDUG00000016283	snrpf	75	73.016	Seriola_dumerili
ENSPTIG00000005117	-	95	55.000	ENSSLDG00000003885	-	90	56.757	Seriola_lalandi_dorsalis
ENSPTIG00000005117	-	89	73.333	ENSSLDG00000005119	snrpf	98	76.190	Seriola_lalandi_dorsalis
ENSPTIG00000005117	-	87	76.712	ENSSPUG00000014590	-	96	79.268	Sphenodon_punctatus
ENSPTIG00000005117	-	88	74.324	ENSSPAG00000003283	snrpf	94	77.108	Stegastes_partitus
ENSPTIG00000005117	-	89	77.333	ENSSSCG00000000895	SNRPF	98	79.762	Sus_scrofa
ENSPTIG00000005117	-	69	68.966	ENSTRUG00000014956	snrpf	97	73.134	Takifugu_rubripes
ENSPTIG00000005117	-	89	73.333	ENSTNIG00000012672	snrpf	98	76.190	Tetraodon_nigroviridis
ENSPTIG00000005117	-	89	60.000	ENSTTRG00000006070	SNRPF	98	64.286	Tursiops_truncatus
ENSPTIG00000005117	-	100	70.238	ENSUAMG00000001101	-	98	69.048	Ursus_americanus
ENSPTIG00000005117	-	89	77.333	ENSUAMG00000008176	-	98	79.762	Ursus_americanus
ENSPTIG00000005117	-	89	69.333	ENSUMAG00000006177	-	98	69.048	Ursus_maritimus
ENSPTIG00000005117	-	89	77.333	ENSUMAG00000003528	-	98	79.762	Ursus_maritimus
ENSPTIG00000005117	-	89	77.333	ENSVPAG00000008712	-	98	79.762	Vicugna_pacos
ENSPTIG00000005117	-	93	70.513	ENSVVUG00000023821	-	96	69.333	Vulpes_vulpes
ENSPTIG00000005117	-	88	60.526	ENSXETG00000021630	snrpf	98	64.706	Xenopus_tropicalis
ENSPTIG00000005117	-	87	73.973	ENSXCOG00000013860	snrpf	94	76.829	Xiphophorus_couchianus
ENSPTIG00000005117	-	87	73.973	ENSXMAG00000015448	snrpf	96	76.829	Xiphophorus_maculatus