EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTIG00000005604 (Gene tree)
Gene ID: 102972171
Gene Symbol: CPSF4
Alias: -
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Minus strand
Length: 13572 bases
Position: chrKE721749.1:481064-494635
Accession: 102972171
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000002688	zf-CCCH	PF00642.24	3.1e-20	1	2
ENSPTIP00000002688	zf-CCCH	PF00642.24	3.1e-20	2	2
ENSPTIP00000002693	zf-CCCH	PF00642.24	1.3e-15	1	2
ENSPTIP00000002693	zf-CCCH	PF00642.24	1.3e-15	2	2
ENSPTIP00000002693	zf-CCHC	PF00098.23	2.9e-06	1	1
ENSPTIP00000002688	zf-CCHC	PF00098.23	3.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000006382	CPSF4-202	636	-	ENSPTIP00000002693	211 (aa)	-	-
ENSPTIT00000006377	CPSF4-201	1631	XM_007081119	ENSPTIP00000002688	269 (aa)	XP_007081181	-

Gene Model

Click here to download ENSPTIG00000005604's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptg03015	mRNA surveillance pathway	KEGG
ptg05164	Influenza A	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000005604's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTIG00000005604	CPSF4	55	61.486	ENSPTIG00000012676	CPSF4L	83	61.486

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000005604	CPSF4	90	99.174	ENSG00000160917	CPSF4	100	100.000	Homo_sapiens
ENSPTIG00000005604	CPSF4	67	74.176	ENSAPOG00000004921	cpsf4	100	74.176	Acanthochromis_polyacanthus
ENSPTIG00000005604	CPSF4	90	99.587	ENSAMEG00000006252	CPSF4	90	99.587	Ailuropoda_melanoleuca
ENSPTIG00000005604	CPSF4	90	78.099	ENSACIG00000009248	cpsf4	89	76.033	Amphilophus_citrinellus
ENSPTIG00000005604	CPSF4	90	84.774	ENSAOCG00000019616	cpsf4	90	84.774	Amphiprion_ocellaris
ENSPTIG00000005604	CPSF4	90	84.774	ENSAPEG00000011679	cpsf4	90	84.774	Amphiprion_percula
ENSPTIG00000005604	CPSF4	90	83.673	ENSATEG00000007010	cpsf4	90	83.673	Anabas_testudineus
ENSPTIG00000005604	CPSF4	90	94.215	ENSACAG00000012941	CPSF4	80	94.215	Anolis_carolinensis
ENSPTIG00000005604	CPSF4	90	99.174	ENSANAG00000021360	CPSF4	90	99.174	Aotus_nancymaae
ENSPTIG00000005604	CPSF4	90	83.539	ENSACLG00000010374	cpsf4	90	83.539	Astatotilapia_calliptera
ENSPTIG00000005604	CPSF4	90	84.836	ENSAMXG00000031647	cpsf4	90	85.656	Astyanax_mexicanus
ENSPTIG00000005604	CPSF4	90	88.017	ENSBTAG00000002090	CPSF4	89	88.017	Bos_taurus
ENSPTIG00000005604	CPSF4	90	99.174	ENSCJAG00000015826	CPSF4	90	99.174	Callithrix_jacchus
ENSPTIG00000005604	CPSF4	90	99.174	ENSCAFG00000015036	CPSF4	90	99.174	Canis_familiaris
ENSPTIG00000005604	CPSF4	90	92.149	ENSCAFG00020014462	CPSF4	90	92.149	Canis_lupus_dingo
ENSPTIG00000005604	CPSF4	90	98.760	ENSCHIG00000014313	CPSF4	90	98.760	Capra_hircus
ENSPTIG00000005604	CPSF4	87	98.913	ENSTSYG00000005712	-	87	98.913	Carlito_syrichta
ENSPTIG00000005604	CPSF4	90	81.070	ENSTSYG00000014604	-	87	84.409	Carlito_syrichta
ENSPTIG00000005604	CPSF4	89	82.573	ENSTSYG00000008195	-	100	85.635	Carlito_syrichta
ENSPTIG00000005604	CPSF4	81	99.541	ENSCAPG00000013881	CPSF4	87	99.541	Cavia_aperea
ENSPTIG00000005604	CPSF4	87	99.457	ENSCPOG00000001783	CPSF4	87	99.457	Cavia_porcellus
ENSPTIG00000005604	CPSF4	90	99.174	ENSCCAG00000028291	CPSF4	90	99.174	Cebus_capucinus
ENSPTIG00000005604	CPSF4	90	99.174	ENSCATG00000038440	CPSF4	90	99.174	Cercocebus_atys
ENSPTIG00000005604	CPSF4	90	99.587	ENSCLAG00000007050	CPSF4	90	99.587	Chinchilla_lanigera
ENSPTIG00000005604	CPSF4	90	99.174	ENSCSAG00000017795	CPSF4	90	99.174	Chlorocebus_sabaeus
ENSPTIG00000005604	CPSF4	80	95.370	ENSCPBG00000020869	CPSF4	100	95.370	Chrysemys_picta_bellii
ENSPTIG00000005604	CPSF4	51	86.232	ENSCPBG00000010269	-	84	85.612	Chrysemys_picta_bellii
ENSPTIG00000005604	CPSF4	87	54.701	ENSCING00000021080	-	87	54.701	Ciona_intestinalis
ENSPTIG00000005604	CPSF4	86	51.562	ENSCSAVG00000011469	-	88	51.181	Ciona_savignyi
ENSPTIG00000005604	CPSF4	90	99.174	ENSCANG00000019384	CPSF4	90	99.174	Colobus_angolensis_palliatus
ENSPTIG00000005604	CPSF4	87	99.457	ENSCGRG00001024184	Cpsf4	87	99.457	Cricetulus_griseus_chok1gshd
ENSPTIG00000005604	CPSF4	90	99.587	ENSCGRG00000013892	Cpsf4	90	99.587	Cricetulus_griseus_crigri
ENSPTIG00000005604	CPSF4	90	83.951	ENSCSEG00000019055	cpsf4	90	83.951	Cynoglossus_semilaevis
ENSPTIG00000005604	CPSF4	90	83.128	ENSCVAG00000016528	cpsf4	90	83.128	Cyprinodon_variegatus
ENSPTIG00000005604	CPSF4	90	84.426	ENSDARG00000020217	cpsf4	90	84.426	Danio_rerio
ENSPTIG00000005604	CPSF4	90	99.174	ENSDNOG00000006344	CPSF4	90	99.174	Dasypus_novemcinctus
ENSPTIG00000005604	CPSF4	81	99.078	ENSDORG00000000742	Cpsf4	100	99.078	Dipodomys_ordii
ENSPTIG00000005604	CPSF4	90	56.981	FBgn0015621	Clp	90	55.472	Drosophila_melanogaster
ENSPTIG00000005604	CPSF4	61	100.000	ENSETEG00000002608	CPSF4	59	100.000	Echinops_telfairi
ENSPTIG00000005604	CPSF4	89	66.667	ENSEBUG00000012552	cpsf4	87	66.667	Eptatretus_burgeri
ENSPTIG00000005604	CPSF4	90	89.256	ENSEASG00005002487	CPSF4	89	89.256	Equus_asinus_asinus
ENSPTIG00000005604	CPSF4	90	99.587	ENSECAG00000007525	CPSF4	90	99.587	Equus_caballus
ENSPTIG00000005604	CPSF4	68	100.000	ENSEEUG00000002158	CPSF4	73	100.000	Erinaceus_europaeus
ENSPTIG00000005604	CPSF4	90	82.186	ENSELUG00000011481	cpsf4	90	82.186	Esox_lucius
ENSPTIG00000005604	CPSF4	90	99.587	ENSFCAG00000015070	CPSF4	90	99.587	Felis_catus
ENSPTIG00000005604	CPSF4	90	85.537	ENSFALG00000013799	CPSF4	89	83.884	Ficedula_albicollis
ENSPTIG00000005604	CPSF4	90	98.760	ENSFDAG00000014092	CPSF4	99	98.760	Fukomys_damarensis
ENSPTIG00000005604	CPSF4	90	82.305	ENSFHEG00000010880	cpsf4	90	82.305	Fundulus_heteroclitus
ENSPTIG00000005604	CPSF4	90	76.639	ENSGMOG00000002330	cpsf4	90	75.000	Gadus_morhua
ENSPTIG00000005604	CPSF4	68	38.421	ENSGALG00000004441	-	92	36.842	Gallus_gallus
ENSPTIG00000005604	CPSF4	90	85.124	ENSGALG00000004714	CPSF4	89	83.884	Gallus_gallus
ENSPTIG00000005604	CPSF4	90	82.305	ENSGAFG00000010580	cpsf4	90	82.305	Gambusia_affinis
ENSPTIG00000005604	CPSF4	90	77.459	ENSGACG00000007792	cpsf4	89	76.639	Gasterosteus_aculeatus
ENSPTIG00000005604	CPSF4	90	95.455	ENSGAGG00000021835	CPSF4	90	95.455	Gopherus_agassizii
ENSPTIG00000005604	CPSF4	58	80.645	ENSGAGG00000020579	-	77	86.232	Gopherus_agassizii
ENSPTIG00000005604	CPSF4	90	99.174	ENSGGOG00000015131	CPSF4	90	99.174	Gorilla_gorilla
ENSPTIG00000005604	CPSF4	90	83.539	ENSHBUG00000013699	cpsf4	90	83.539	Haplochromis_burtoni
ENSPTIG00000005604	CPSF4	90	97.541	ENSHGLG00000017150	CPSF4	90	97.541	Heterocephalus_glaber_female
ENSPTIG00000005604	CPSF4	87	95.763	ENSHGLG00100009215	-	100	96.591	Heterocephalus_glaber_male
ENSPTIG00000005604	CPSF4	87	67.935	ENSHGLG00100017302	-	84	64.130	Heterocephalus_glaber_male
ENSPTIG00000005604	CPSF4	90	80.247	ENSHCOG00000004397	cpsf4	90	77.778	Hippocampus_comes
ENSPTIG00000005604	CPSF4	90	83.607	ENSIPUG00000017147	cpsf4	90	84.898	Ictalurus_punctatus
ENSPTIG00000005604	CPSF4	90	99.587	ENSSTOG00000001688	CPSF4	90	99.587	Ictidomys_tridecemlineatus
ENSPTIG00000005604	CPSF4	90	99.587	ENSJJAG00000019426	Cpsf4	90	99.587	Jaculus_jaculus
ENSPTIG00000005604	CPSF4	90	81.893	ENSKMAG00000015642	cpsf4	90	81.893	Kryptolebias_marmoratus
ENSPTIG00000005604	CPSF4	90	60.494	ENSLACG00000018470	-	89	60.494	Latimeria_chalumnae
ENSPTIG00000005604	CPSF4	90	88.889	ENSLACG00000010938	CPSF4	90	88.889	Latimeria_chalumnae
ENSPTIG00000005604	CPSF4	90	89.256	ENSLOCG00000004814	cpsf4	90	89.256	Lepisosteus_oculatus
ENSPTIG00000005604	CPSF4	90	99.174	ENSLAFG00000000159	CPSF4	100	98.137	Loxodonta_africana
ENSPTIG00000005604	CPSF4	90	99.174	ENSMFAG00000001462	CPSF4	90	99.174	Macaca_fascicularis
ENSPTIG00000005604	CPSF4	90	99.174	ENSMMUG00000019191	CPSF4	90	99.174	Macaca_mulatta
ENSPTIG00000005604	CPSF4	90	99.174	ENSMNEG00000032306	CPSF4	90	99.174	Macaca_nemestrina
ENSPTIG00000005604	CPSF4	90	99.174	ENSMLEG00000034721	CPSF4	90	99.174	Mandrillus_leucophaeus
ENSPTIG00000005604	CPSF4	90	83.539	ENSMAMG00000006244	cpsf4	90	80.488	Mastacembelus_armatus
ENSPTIG00000005604	CPSF4	90	83.539	ENSMZEG00005007515	cpsf4	90	83.539	Maylandia_zebra
ENSPTIG00000005604	CPSF4	87	84.255	ENSMGAG00000004235	CPSF4	100	82.979	Meleagris_gallopavo
ENSPTIG00000005604	CPSF4	90	99.587	ENSMAUG00000021253	Cpsf4	90	99.587	Mesocricetus_auratus
ENSPTIG00000005604	CPSF4	90	99.174	ENSMICG00000017429	CPSF4	90	99.174	Microcebus_murinus
ENSPTIG00000005604	CPSF4	90	99.587	ENSMOCG00000014901	Cpsf4	90	99.587	Microtus_ochrogaster
ENSPTIG00000005604	CPSF4	90	83.951	ENSMMOG00000001813	cpsf4	90	83.951	Mola_mola
ENSPTIG00000005604	CPSF4	90	97.107	ENSMODG00000001367	CPSF4	90	97.107	Monodelphis_domestica
ENSPTIG00000005604	CPSF4	90	82.305	ENSMALG00000012611	cpsf4	90	82.305	Monopterus_albus
ENSPTIG00000005604	CPSF4	90	99.587	MGP_CAROLIEiJ_G0028012	Cpsf4	90	99.587	Mus_caroli
ENSPTIG00000005604	CPSF4	90	99.587	ENSMUSG00000029625	Cpsf4	90	99.587	Mus_musculus
ENSPTIG00000005604	CPSF4	90	99.587	MGP_PahariEiJ_G0024581	Cpsf4	90	99.587	Mus_pahari
ENSPTIG00000005604	CPSF4	90	99.587	MGP_SPRETEiJ_G0029013	Cpsf4	90	99.587	Mus_spretus
ENSPTIG00000005604	CPSF4	90	99.587	ENSMPUG00000016508	CPSF4	90	99.587	Mustela_putorius_furo
ENSPTIG00000005604	CPSF4	87	88.085	ENSMLUG00000010980	CPSF4	100	88.085	Myotis_lucifugus
ENSPTIG00000005604	CPSF4	90	99.174	ENSNGAG00000001567	Cpsf4	90	99.174	Nannospalax_galili
ENSPTIG00000005604	CPSF4	90	83.539	ENSNBRG00000003943	cpsf4	96	83.539	Neolamprologus_brichardi
ENSPTIG00000005604	CPSF4	87	98.913	ENSNLEG00000011074	CPSF4	87	98.913	Nomascus_leucogenys
ENSPTIG00000005604	CPSF4	90	97.107	ENSMEUG00000006955	CPSF4	90	97.107	Notamacropus_eugenii
ENSPTIG00000005604	CPSF4	90	99.174	ENSOPRG00000013663	CPSF4	90	99.174	Ochotona_princeps
ENSPTIG00000005604	CPSF4	81	79.909	ENSODEG00000018283	-	78	77.169	Octodon_degus
ENSPTIG00000005604	CPSF4	90	99.587	ENSODEG00000011181	-	90	99.587	Octodon_degus
ENSPTIG00000005604	CPSF4	90	73.984	ENSODEG00000009779	-	90	73.984	Octodon_degus
ENSPTIG00000005604	CPSF4	90	83.539	ENSONIG00000008495	cpsf4	90	83.539	Oreochromis_niloticus
ENSPTIG00000005604	CPSF4	90	54.183	ENSOANG00000009568	-	90	51.793	Ornithorhynchus_anatinus
ENSPTIG00000005604	CPSF4	87	95.319	ENSOANG00000007729	CPSF4	100	95.319	Ornithorhynchus_anatinus
ENSPTIG00000005604	CPSF4	90	99.174	ENSOCUG00000002437	CPSF4	63	99.174	Oryctolagus_cuniculus
ENSPTIG00000005604	CPSF4	90	82.645	ENSORLG00000022798	cpsf4	90	82.645	Oryzias_latipes
ENSPTIG00000005604	CPSF4	90	82.645	ENSORLG00020008548	cpsf4	90	82.645	Oryzias_latipes_hni
ENSPTIG00000005604	CPSF4	90	82.645	ENSORLG00015019575	cpsf4	90	82.645	Oryzias_latipes_hsok
ENSPTIG00000005604	CPSF4	90	81.405	ENSOMEG00000005176	cpsf4	90	81.405	Oryzias_melastigma
ENSPTIG00000005604	CPSF4	90	99.587	ENSOGAG00000010884	CPSF4	90	99.587	Otolemur_garnettii
ENSPTIG00000005604	CPSF4	90	86.585	ENSOARG00000018668	CPSF4	90	86.179	Ovis_aries
ENSPTIG00000005604	CPSF4	90	98.760	ENSPPAG00000043355	CPSF4	90	98.760	Pan_paniscus
ENSPTIG00000005604	CPSF4	90	99.587	ENSPPRG00000003134	CPSF4	90	99.587	Panthera_pardus
ENSPTIG00000005604	CPSF4	90	98.760	ENSPTRG00000019453	CPSF4	90	98.760	Pan_troglodytes
ENSPTIG00000005604	CPSF4	90	99.174	ENSPANG00000023123	CPSF4	90	99.174	Papio_anubis
ENSPTIG00000005604	CPSF4	90	83.806	ENSPKIG00000014278	cpsf4	90	83.806	Paramormyrops_kingsleyae
ENSPTIG00000005604	CPSF4	81	58.904	ENSPSIG00000018198	-	100	57.798	Pelodiscus_sinensis
ENSPTIG00000005604	CPSF4	80	94.907	ENSPSIG00000011229	CPSF4	100	94.907	Pelodiscus_sinensis
ENSPTIG00000005604	CPSF4	90	71.488	ENSPMGG00000017735	cpsf4	88	70.661	Periophthalmus_magnuspinnatus
ENSPTIG00000005604	CPSF4	90	99.587	ENSPEMG00000004508	Cpsf4	90	99.587	Peromyscus_maniculatus_bairdii
ENSPTIG00000005604	CPSF4	90	97.107	ENSPCIG00000024776	CPSF4	90	97.107	Phascolarctos_cinereus
ENSPTIG00000005604	CPSF4	90	82.305	ENSPFOG00000014912	cpsf4	90	82.305	Poecilia_formosa
ENSPTIG00000005604	CPSF4	90	74.380	ENSPLAG00000009599	cpsf4	89	74.380	Poecilia_latipinna
ENSPTIG00000005604	CPSF4	90	82.305	ENSPMEG00000009790	cpsf4	90	82.305	Poecilia_mexicana
ENSPTIG00000005604	CPSF4	90	81.481	ENSPREG00000018166	cpsf4	90	78.189	Poecilia_reticulata
ENSPTIG00000005604	CPSF4	87	98.291	ENSPPYG00000017378	CPSF4	100	98.291	Pongo_abelii
ENSPTIG00000005604	CPSF4	90	98.760	ENSPCAG00000001892	CPSF4	90	98.760	Procavia_capensis
ENSPTIG00000005604	CPSF4	90	99.174	ENSPCOG00000012771	CPSF4	90	99.174	Propithecus_coquereli
ENSPTIG00000005604	CPSF4	90	92.149	ENSPVAG00000007531	CPSF4	90	92.149	Pteropus_vampyrus
ENSPTIG00000005604	CPSF4	90	83.539	ENSPNYG00000018559	cpsf4	90	83.539	Pundamilia_nyererei
ENSPTIG00000005604	CPSF4	90	85.246	ENSPNAG00000003736	cpsf4	90	86.066	Pygocentrus_nattereri
ENSPTIG00000005604	CPSF4	87	99.457	ENSRNOG00000000985	Cpsf4	87	99.457	Rattus_norvegicus
ENSPTIG00000005604	CPSF4	87	99.145	ENSRBIG00000033886	CPSF4	100	99.145	Rhinopithecus_bieti
ENSPTIG00000005604	CPSF4	87	98.913	ENSRROG00000040431	CPSF4	87	98.913	Rhinopithecus_roxellana
ENSPTIG00000005604	CPSF4	90	99.174	ENSSBOG00000020493	CPSF4	90	99.174	Saimiri_boliviensis_boliviensis
ENSPTIG00000005604	CPSF4	90	97.107	ENSSHAG00000011533	CPSF4	90	97.107	Sarcophilus_harrisii
ENSPTIG00000005604	CPSF4	90	84.337	ENSSFOG00015007883	cpsf4	90	85.141	Scleropages_formosus
ENSPTIG00000005604	CPSF4	90	78.512	ENSSMAG00000006374	cpsf4	89	76.860	Scophthalmus_maximus
ENSPTIG00000005604	CPSF4	90	83.128	ENSSDUG00000018887	cpsf4	90	83.128	Seriola_dumerili
ENSPTIG00000005604	CPSF4	90	83.128	ENSSLDG00000019078	cpsf4	90	83.128	Seriola_lalandi_dorsalis
ENSPTIG00000005604	CPSF4	87	99.573	ENSSARG00000012416	CPSF4	100	99.573	Sorex_araneus
ENSPTIG00000005604	CPSF4	90	94.628	ENSSPUG00000003549	CPSF4	90	94.628	Sphenodon_punctatus
ENSPTIG00000005604	CPSF4	86	60.086	ENSSPUG00000014803	-	85	60.173	Sphenodon_punctatus
ENSPTIG00000005604	CPSF4	90	78.512	ENSSPAG00000006174	cpsf4	89	76.033	Stegastes_partitus
ENSPTIG00000005604	CPSF4	90	89.256	ENSSSCG00000026896	CPSF4	89	89.256	Sus_scrofa
ENSPTIG00000005604	CPSF4	90	84.426	ENSTGUG00000007552	CPSF4	89	82.787	Taeniopygia_guttata
ENSPTIG00000005604	CPSF4	90	80.488	ENSTRUG00000024220	cpsf4	90	80.488	Takifugu_rubripes
ENSPTIG00000005604	CPSF4	90	79.424	ENSTNIG00000006265	cpsf4	90	81.070	Tetraodon_nigroviridis
ENSPTIG00000005604	CPSF4	87	89.744	ENSTBEG00000011406	CPSF4	100	89.744	Tupaia_belangeri
ENSPTIG00000005604	CPSF4	90	76.033	ENSTTRG00000003007	CPSF4	90	76.033	Tursiops_truncatus
ENSPTIG00000005604	CPSF4	82	87.727	ENSUAMG00000008051	CPSF4	75	87.727	Ursus_americanus
ENSPTIG00000005604	CPSF4	90	88.843	ENSUMAG00000009474	CPSF4	89	88.843	Ursus_maritimus
ENSPTIG00000005604	CPSF4	90	88.843	ENSVVUG00000008824	CPSF4	89	88.843	Vulpes_vulpes
ENSPTIG00000005604	CPSF4	90	88.492	ENSXETG00000009892	cpsf4	90	88.492	Xenopus_tropicalis
ENSPTIG00000005604	CPSF4	89	61.826	ENSXETG00000004641	cpsf4l	89	61.506	Xenopus_tropicalis
ENSPTIG00000005604	CPSF4	90	81.893	ENSXCOG00000016040	cpsf4	90	81.893	Xiphophorus_couchianus
ENSPTIG00000005604	CPSF4	90	82.305	ENSXMAG00000024670	cpsf4	90	82.305	Xiphophorus_maculatus