EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPTIG00000005829 (Gene tree)
Gene ID
102965854
Gene Symbol
PABPC4
Alias
-
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Panthera_tigris_altaica
Status
putative
Strand
Plus strand
Length
15154 bases
Position
chrKE721694.1:13416127-13431280
Accession
102965854
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPTIP00000002968PABPPF00658.181.6e-3111
ENSPTIP00000002960PABPPF00658.181.8e-3111
ENSPTIP00000002968RRM_5PF13893.62.6e-0912
ENSPTIP00000002968RRM_5PF13893.62.6e-0922
ENSPTIP00000002960RRM_5PF13893.63.3e-0912
ENSPTIP00000002960RRM_5PF13893.63.3e-0922
ENSPTIP00000002968RRM_1PF00076.223e-9214
ENSPTIP00000002968RRM_1PF00076.223e-9224
ENSPTIP00000002968RRM_1PF00076.223e-9234
ENSPTIP00000002968RRM_1PF00076.223e-9244
ENSPTIP00000002960RRM_1PF00076.223.8e-9214
ENSPTIP00000002960RRM_1PF00076.223.8e-9224
ENSPTIP00000002960RRM_1PF00076.223.8e-9234
ENSPTIP00000002960RRM_1PF00076.223.8e-9244
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPTIT00000006654PABPC4-2012773XM_007077409ENSPTIP00000002960660 (aa)XP_007077471UPI000292FF42
ENSPTIT00000006662PABPC4-2022686XM_007077413ENSPTIP00000002968631 (aa)XP_007077475UPI00004BC244
Gene Model
Click here to download ENSPTIG00000005829's gene model file
Pathways
Pathway IDPathway NameSource
ptg03013RNA transportKEGG
ptg03015mRNA surveillance pathwayKEGG
ptg03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000005829's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPTIG00000005829PABPC45833.553ENSPTIG00000013602ELAVL18233.065
ENSPTIG00000005829PABPC46374.865ENSPTIG00000010106PABPC4L9974.865
ENSPTIG00000005829PABPC45930.625ENSPTIG00000016727ELAVL49033.735
ENSPTIG00000005829PABPC45730.370ENSPTIG00000011985TIA18530.189
ENSPTIG00000005829PABPC45867.978ENSPTIG00000001480PABPC59667.769
ENSPTIG00000005829PABPC45934.940ENSPTIG00000005627ELAVL28934.940
ENSPTIG00000005829PABPC45338.889ENSPTIG00000003974CELF17038.636
ENSPTIG00000005829PABPC49767.532ENSPTIG00000006524PABPC1L9967.532
ENSPTIG00000005829PABPC49981.818ENSPTIG00000021083PABPC19490.000
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPTIG00000005829PABPC410099.242ENSG00000090621PABPC4100100.000Homo_sapiens
ENSPTIG00000005829PABPC49983.043ENSAPOG00000001161pabpc410083.281Acanthochromis_polyacanthus
ENSPTIG00000005829PABPC410099.697ENSAMEG00000011535-10099.697Ailuropoda_melanoleuca
ENSPTIG00000005829PABPC49857.395ENSAMEG00000015083-9957.074Ailuropoda_melanoleuca
ENSPTIG00000005829PABPC410083.594ENSACIG00000023343pabpc410084.219Amphilophus_citrinellus
ENSPTIG00000005829PABPC49983.518ENSAOCG00000021529pabpc410083.750Amphiprion_ocellaris
ENSPTIG00000005829PABPC49983.518ENSAPEG00000019196pabpc410083.750Amphiprion_percula
ENSPTIG00000005829PABPC49982.622ENSATEG00000007402pabpc410082.071Anabas_testudineus
ENSPTIG00000005829PABPC49991.587ENSAPLG00000009729-10091.587Anas_platyrhynchos
ENSPTIG00000005829PABPC49989.982ENSACAG00000002544PABPC410089.982Anolis_carolinensis
ENSPTIG00000005829PABPC410099.091ENSANAG00000025079PABPC410099.091Aotus_nancymaae
ENSPTIG00000005829PABPC410083.125ENSACLG00000019558pabpc410083.204Astatotilapia_calliptera
ENSPTIG00000005829PABPC49979.081ENSAMXG00000018779pabpc49979.873Astyanax_mexicanus
ENSPTIG00000005829PABPC410096.823ENSBTAG00000017125PABPC410096.823Bos_taurus
ENSPTIG00000005829PABPC45786.826ENSBTAG00000048536-9886.826Bos_taurus
ENSPTIG00000005829PABPC47789.344ENSCJAG00000045953-9289.300Callithrix_jacchus
ENSPTIG00000005829PABPC410098.939ENSCJAG00000002512-10098.939Callithrix_jacchus
ENSPTIG00000005829PABPC4100100.000ENSCAFG00000003081PABPC4100100.000Canis_familiaris
ENSPTIG00000005829PABPC410099.848ENSCAFG00020004161PABPC410099.848Canis_lupus_dingo
ENSPTIG00000005829PABPC410099.394ENSCHIG00000019398-10099.394Capra_hircus
ENSPTIG00000005829PABPC410076.667ENSCHIG00000023385-10076.667Capra_hircus
ENSPTIG00000005829PABPC410099.242ENSTSYG00000006532PABPC410099.242Carlito_syrichta
ENSPTIG00000005829PABPC49998.936ENSCAPG00000015984PABPC410098.936Cavia_aperea
ENSPTIG00000005829PABPC410098.939ENSCPOG00000009552PABPC410098.939Cavia_porcellus
ENSPTIG00000005829PABPC410099.091ENSCCAG00000037306PABPC410099.091Cebus_capucinus
ENSPTIG00000005829PABPC410099.394ENSCATG00000042164PABPC410099.394Cercocebus_atys
ENSPTIG00000005829PABPC410099.091ENSCLAG00000011899PABPC410099.091Chinchilla_lanigera
ENSPTIG00000005829PABPC410099.394ENSCSAG00000001135PABPC410099.394Chlorocebus_sabaeus
ENSPTIG00000005829PABPC48697.889ENSCHOG00000005327PABPC48197.889Choloepus_hoffmanni
ENSPTIG00000005829PABPC49991.905ENSCPBG00000001038PABPC410091.905Chrysemys_picta_bellii
ENSPTIG00000005829PABPC49999.232ENSCANG00000034177PABPC410099.232Colobus_angolensis_palliatus
ENSPTIG00000005829PABPC410097.440ENSCGRG00001018166Pabpc410097.440Cricetulus_griseus_chok1gshd
ENSPTIG00000005829PABPC49995.115ENSCGRG00000009777Pabpc410095.115Cricetulus_griseus_crigri
ENSPTIG00000005829PABPC410082.500ENSCSEG00000000130pabpc410083.125Cynoglossus_semilaevis
ENSPTIG00000005829PABPC49983.784ENSCVAG00000019246pabpc410083.861Cyprinodon_variegatus
ENSPTIG00000005829PABPC49985.079ENSDARG00000059259pabpc410085.855Danio_rerio
ENSPTIG00000005829PABPC49999.643ENSDNOG00000018444-10099.643Dasypus_novemcinctus
ENSPTIG00000005829PABPC410096.818ENSDORG00000011581Pabpc410096.818Dipodomys_ordii
ENSPTIG00000005829PABPC48665.000ENSETEG00000009172-9965.018Echinops_telfairi
ENSPTIG00000005829PABPC4100100.000ENSETEG00000018453-84100.000Echinops_telfairi
ENSPTIG00000005829PABPC49976.741ENSEBUG00000000992pabpc49980.346Eptatretus_burgeri
ENSPTIG00000005829PABPC49776.898ENSEBUG00000013782pabpc49976.266Eptatretus_burgeri
ENSPTIG00000005829PABPC410099.697ENSEASG00005014119PABPC410099.697Equus_asinus_asinus
ENSPTIG00000005829PABPC410099.697ENSECAG00000009396PABPC410099.697Equus_caballus
ENSPTIG00000005829PABPC410096.061ENSEEUG00000002962PABPC410096.061Erinaceus_europaeus
ENSPTIG00000005829PABPC49983.758ENSELUG00000003195pabpc49884.335Esox_lucius
ENSPTIG00000005829PABPC4100100.000ENSFCAG00000015254-100100.000Felis_catus
ENSPTIG00000005829PABPC49991.111ENSFALG00000000543PABPC410091.111Ficedula_albicollis
ENSPTIG00000005829PABPC49067.078ENSFDAG00000010581-10063.025Fukomys_damarensis
ENSPTIG00000005829PABPC410099.242ENSFDAG00000020016-10099.242Fukomys_damarensis
ENSPTIG00000005829PABPC410083.568ENSFHEG00000007548pabpc49391.031Fundulus_heteroclitus
ENSPTIG00000005829PABPC49982.808ENSGMOG00000019025pabpc49983.438Gadus_morhua
ENSPTIG00000005829PABPC49992.063ENSGALG00000003800PABPC410092.063Gallus_gallus
ENSPTIG00000005829PABPC410082.915ENSGAFG00000018195pabpc49895.556Gambusia_affinis
ENSPTIG00000005829PABPC410081.591ENSGACG00000007179pabpc410082.215Gasterosteus_aculeatus
ENSPTIG00000005829PABPC49991.746ENSGAGG00000001888PABPC410091.746Gopherus_agassizii
ENSPTIG00000005829PABPC410099.242ENSGGOG00000004002PABPC410099.242Gorilla_gorilla
ENSPTIG00000005829PABPC410083.281ENSHBUG00000020206pabpc410083.359Haplochromis_burtoni
ENSPTIG00000005829PABPC410099.394ENSHGLG00000011162PABPC410099.394Heterocephalus_glaber_female
ENSPTIG00000005829PABPC410099.366ENSHGLG00100001580PABPC410099.366Heterocephalus_glaber_male
ENSPTIG00000005829PABPC410082.160ENSHCOG00000012694pabpc410082.812Hippocampus_comes
ENSPTIG00000005829PABPC49883.307ENSIPUG00000016620pabpc49983.333Ictalurus_punctatus
ENSPTIG00000005829PABPC410096.970ENSSTOG00000010416PABPC410096.970Ictidomys_tridecemlineatus
ENSPTIG00000005829PABPC410095.000ENSJJAG00000007781Pabpc410095.000Jaculus_jaculus
ENSPTIG00000005829PABPC49991.076ENSKMAG00000013597pabpc49982.188Kryptolebias_marmoratus
ENSPTIG00000005829PABPC410082.426ENSLBEG00000013654pabpc410082.143Labrus_bergylta
ENSPTIG00000005829PABPC49988.170ENSLACG00000011907PABPC410088.170Latimeria_chalumnae
ENSPTIG00000005829PABPC49985.827ENSLOCG00000001877pabpc49986.614Lepisosteus_oculatus
ENSPTIG00000005829PABPC410099.697ENSLAFG00000000151PABPC410099.697Loxodonta_africana
ENSPTIG00000005829PABPC410099.394ENSMFAG00000041481PABPC410099.394Macaca_fascicularis
ENSPTIG00000005829PABPC410099.394ENSMMUG00000007497PABPC410099.394Macaca_mulatta
ENSPTIG00000005829PABPC410099.242ENSMNEG00000043054PABPC410099.242Macaca_nemestrina
ENSPTIG00000005829PABPC410099.394ENSMLEG00000040716PABPC410099.394Mandrillus_leucophaeus
ENSPTIG00000005829PABPC49982.884ENSMAMG00000010025pabpc49982.059Mastacembelus_armatus
ENSPTIG00000005829PABPC410082.969ENSMZEG00005006141pabpc410083.048Maylandia_zebra
ENSPTIG00000005829PABPC49988.075ENSMGAG00000005408PABPC410088.075Meleagris_gallopavo
ENSPTIG00000005829PABPC47289.423ENSMAUG00000001295-9789.423Mesocricetus_auratus
ENSPTIG00000005829PABPC47795.413ENSMAUG00000019763-8495.413Mesocricetus_auratus
ENSPTIG00000005829PABPC45781.287ENSMAUG00000004089-9281.287Mesocricetus_auratus
ENSPTIG00000005829PABPC49984.725ENSMICG00000036729-10085.258Microcebus_murinus
ENSPTIG00000005829PABPC48996.441ENSMICG00000016633-10096.441Microcebus_murinus
ENSPTIG00000005829PABPC410097.892ENSMOCG00000006763Pabpc410097.892Microtus_ochrogaster
ENSPTIG00000005829PABPC410080.503ENSMMOG00000002363pabpc49981.790Mola_mola
ENSPTIG00000005829PABPC45974.011ENSMODG00000018051-9174.011Monodelphis_domestica
ENSPTIG00000005829PABPC49889.352ENSMODG00000017657-10088.939Monodelphis_domestica
ENSPTIG00000005829PABPC49982.780ENSMALG00000011017pabpc410082.481Monopterus_albus
ENSPTIG00000005829PABPC410097.727MGP_CAROLIEiJ_G0026435-10099.291Mus_caroli
ENSPTIG00000005829PABPC49983.898MGP_CAROLIEiJ_G0024864-10083.898Mus_caroli
ENSPTIG00000005829PABPC410098.182ENSMUSG00000011257Pabpc410099.405Mus_musculus
ENSPTIG00000005829PABPC49997.849MGP_PahariEiJ_G0028765Pabpc4100100.000Mus_pahari
ENSPTIG00000005829PABPC49978.900MGP_SPRETEiJ_G0027415Pabpc410099.291Mus_spretus
ENSPTIG00000005829PABPC4100100.000ENSMPUG00000014414-100100.000Mustela_putorius_furo
ENSPTIG00000005829PABPC49553.477ENSMPUG00000006836-10053.311Mustela_putorius_furo
ENSPTIG00000005829PABPC410096.830ENSMLUG00000012068PABPC410096.830Myotis_lucifugus
ENSPTIG00000005829PABPC410096.970ENSNGAG00000018292Pabpc410096.970Nannospalax_galili
ENSPTIG00000005829PABPC46786.441ENSNBRG00000010047-7586.441Neolamprologus_brichardi
ENSPTIG00000005829PABPC45992.788ENSNBRG00000009708pabpc49892.788Neolamprologus_brichardi
ENSPTIG00000005829PABPC410099.366ENSNLEG00000011928PABPC410099.366Nomascus_leucogenys
ENSPTIG00000005829PABPC48598.737ENSOPRG00000011984PABPC48798.737Ochotona_princeps
ENSPTIG00000005829PABPC49989.733ENSODEG00000017434-10089.613Octodon_degus
ENSPTIG00000005829PABPC410098.636ENSODEG00000006592-10098.636Octodon_degus
ENSPTIG00000005829PABPC45385.714ENSODEG00000013457-10085.714Octodon_degus
ENSPTIG00000005829PABPC410083.281ENSONIG00000008176pabpc410083.906Oreochromis_niloticus
ENSPTIG00000005829PABPC49991.429ENSOANG00000010001PABPC410091.429Ornithorhynchus_anatinus
ENSPTIG00000005829PABPC49699.051ENSOCUG00000000562PABPC48899.051Oryctolagus_cuniculus
ENSPTIG00000005829PABPC49991.049ENSORLG00000017479pabpc49991.049Oryzias_latipes
ENSPTIG00000005829PABPC49991.049ENSORLG00020018644pabpc49991.049Oryzias_latipes_hni
ENSPTIG00000005829PABPC49991.049ENSORLG00015015042pabpc49991.049Oryzias_latipes_hsok
ENSPTIG00000005829PABPC49983.201ENSOMEG00000014410pabpc49983.648Oryzias_melastigma
ENSPTIG00000005829PABPC410096.833ENSOGAG00000004067PABPC410096.833Otolemur_garnettii
ENSPTIG00000005829PABPC410099.394ENSOARG00000020060PABPC410099.394Ovis_aries
ENSPTIG00000005829PABPC410099.242ENSPPAG00000043625PABPC410099.242Pan_paniscus
ENSPTIG00000005829PABPC4100100.000ENSPPRG00000024727PABPC4100100.000Panthera_pardus
ENSPTIG00000005829PABPC410099.242ENSPTRG00000000573PABPC410099.242Pan_troglodytes
ENSPTIG00000005829PABPC410099.545ENSPANG00000009484PABPC410099.545Papio_anubis
ENSPTIG00000005829PABPC49984.968ENSPKIG00000025356pabpc49985.601Paramormyrops_kingsleyae
ENSPTIG00000005829PABPC49991.905ENSPSIG00000016892PABPC410091.905Pelodiscus_sinensis
ENSPTIG00000005829PABPC410081.732ENSPMGG00000009073pabpc49980.818Periophthalmus_magnuspinnatus
ENSPTIG00000005829PABPC410097.424ENSPEMG00000023569-9997.424Peromyscus_maniculatus_bairdii
ENSPTIG00000005829PABPC410091.212ENSPEMG00000024193-9991.212Peromyscus_maniculatus_bairdii
ENSPTIG00000005829PABPC49571.107ENSPMAG00000007885pabpc410069.625Petromyzon_marinus
ENSPTIG00000005829PABPC48973.657ENSPMAG00000002836pabpc410074.177Petromyzon_marinus
ENSPTIG00000005829PABPC49894.033ENSPCIG00000020674PABPC410094.033Phascolarctos_cinereus
ENSPTIG00000005829PABPC410082.942ENSPFOG00000002682pabpc410084.038Poecilia_formosa
ENSPTIG00000005829PABPC410082.786ENSPLAG00000010112pabpc410083.333Poecilia_latipinna
ENSPTIG00000005829PABPC49983.466ENSPMEG00000019739pabpc410084.194Poecilia_mexicana
ENSPTIG00000005829PABPC410083.447ENSPREG00000001589pabpc410083.447Poecilia_reticulata
ENSPTIG00000005829PABPC410099.242ENSPPYG00000001506PABPC410099.242Pongo_abelii
ENSPTIG00000005829PABPC410094.697ENSPCAG00000003341PABPC410094.697Procavia_capensis
ENSPTIG00000005829PABPC410099.395ENSPCOG00000023725-10099.395Propithecus_coquereli
ENSPTIG00000005829PABPC49981.834ENSPCOG00000025882-9594.059Propithecus_coquereli
ENSPTIG00000005829PABPC49999.160ENSPVAG00000002187PABPC410099.160Pteropus_vampyrus
ENSPTIG00000005829PABPC410083.125ENSPNYG00000006134pabpc410083.204Pundamilia_nyererei
ENSPTIG00000005829PABPC410083.255ENSPNAG00000024355pabpc410083.956Pygocentrus_nattereri
ENSPTIG00000005829PABPC410095.758ENSRNOG00000015642Pabpc410095.758Rattus_norvegicus
ENSPTIG00000005829PABPC410093.636ENSRNOG00000028592AABR07035074.110093.636Rattus_norvegicus
ENSPTIG00000005829PABPC410099.394ENSRBIG00000039761PABPC410099.394Rhinopithecus_bieti
ENSPTIG00000005829PABPC410099.394ENSRROG00000033355PABPC410099.394Rhinopithecus_roxellana
ENSPTIG00000005829PABPC410099.242ENSSBOG00000026193PABPC410099.242Saimiri_boliviensis_boliviensis
ENSPTIG00000005829PABPC49892.395ENSSHAG00000018139PABPC410091.905Sarcophilus_harrisii
ENSPTIG00000005829PABPC49985.878ENSSFOG00015023514pabpc49985.878Scleropages_formosus
ENSPTIG00000005829PABPC49982.437ENSSMAG00000009007pabpc49982.104Scophthalmus_maximus
ENSPTIG00000005829PABPC49982.726ENSSDUG00000012683pabpc49588.046Seriola_dumerili
ENSPTIG00000005829PABPC49982.726ENSSLDG00000013025pabpc410082.969Seriola_lalandi_dorsalis
ENSPTIG00000005829PABPC410091.970ENSSARG00000000310PABPC410091.970Sorex_araneus
ENSPTIG00000005829PABPC49990.159ENSSPUG00000003204PABPC410090.159Sphenodon_punctatus
ENSPTIG00000005829PABPC49983.043ENSSPAG00000009252pabpc49983.176Stegastes_partitus
ENSPTIG00000005829PABPC48950.673ENSSSCG00000036170-9650.673Sus_scrofa
ENSPTIG00000005829PABPC410099.545ENSSSCG00000003660-10099.545Sus_scrofa
ENSPTIG00000005829PABPC49987.746ENSTGUG00000001266PABPC410087.746Taeniopygia_guttata
ENSPTIG00000005829PABPC410082.233ENSTRUG00000005907pabpc49982.862Takifugu_rubripes
ENSPTIG00000005829PABPC410078.391ENSTNIG00000016902pabpc49978.391Tetraodon_nigroviridis
ENSPTIG00000005829PABPC49988.235ENSTBEG00000009035PABPC410088.235Tupaia_belangeri
ENSPTIG00000005829PABPC49983.908ENSTTRG00000014340PABPC410087.563Tursiops_truncatus
ENSPTIG00000005829PABPC410099.842ENSUAMG00000000303PABPC410099.842Ursus_americanus
ENSPTIG00000005829PABPC410099.697ENSUMAG00000019585PABPC410099.821Ursus_maritimus
ENSPTIG00000005829PABPC48498.582ENSVPAG00000010041PABPC47798.582Vicugna_pacos
ENSPTIG00000005829PABPC4100100.000ENSVVUG00000005215PABPC4100100.000Vulpes_vulpes
ENSPTIG00000005829PABPC46197.024ENSXETG00000027221-10097.024Xenopus_tropicalis
ENSPTIG00000005829PABPC49983.333ENSXETG00000010946pabpc410083.333Xenopus_tropicalis
ENSPTIG00000005829PABPC49981.282ENSXCOG00000013190pabpc49690.094Xiphophorus_couchianus
ENSPTIG00000005829PABPC410083.099ENSXMAG00000019007pabpc410083.178Xiphophorus_maculatus

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