EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTIG00000005847 (Gene tree)
Gene ID: 102951343
Gene Symbol: PRDM4
Alias: -
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Plus strand
Length: 25378 bases
Position: chrKE722235.1:4225932-4251309
Accession: 102951343
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000002964	zf-C2H2	PF00096.26	4e-19	1	2
ENSPTIP00000002964	zf-C2H2	PF00096.26	4e-19	2	2
ENSPTIP00000002964	zf-met	PF12874.7	2.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000006658	PRDM4-201	3936	XM_007096454	ENSPTIP00000002964	801 (aa)	XP_007096516	UPI000298C188

Gene Model

Click here to download ENSPTIG00000005847's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptg04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000005847's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000005847	PRDM4	100	97.878	ENSG00000110851	PRDM4	100	97.878	Homo_sapiens
ENSPTIG00000005847	PRDM4	99	98.999	ENSAMEG00000016174	PRDM4	99	98.999	Ailuropoda_melanoleuca
ENSPTIG00000005847	PRDM4	99	87.594	ENSAPLG00000009846	PRDM4	99	87.093	Anas_platyrhynchos
ENSPTIG00000005847	PRDM4	100	97.753	ENSANAG00000024800	PRDM4	100	97.753	Aotus_nancymaae
ENSPTIG00000005847	PRDM4	100	98.002	ENSBTAG00000012999	PRDM4	100	98.002	Bos_taurus
ENSPTIG00000005847	PRDM4	100	97.253	ENSCJAG00000015261	PRDM4	100	97.253	Callithrix_jacchus
ENSPTIG00000005847	PRDM4	100	99.001	ENSCAFG00000001788	PRDM4	100	99.001	Canis_familiaris
ENSPTIG00000005847	PRDM4	100	99.001	ENSCAFG00020004916	PRDM4	100	99.001	Canis_lupus_dingo
ENSPTIG00000005847	PRDM4	100	98.002	ENSCHIG00000019409	PRDM4	100	98.002	Capra_hircus
ENSPTIG00000005847	PRDM4	100	97.753	ENSTSYG00000009248	PRDM4	100	97.753	Carlito_syrichta
ENSPTIG00000005847	PRDM4	99	90.738	ENSCAPG00000013937	PRDM4	99	91.239	Cavia_aperea
ENSPTIG00000005847	PRDM4	99	90.807	ENSCPOG00000022385	PRDM4	100	90.807	Cavia_porcellus
ENSPTIG00000005847	PRDM4	100	97.878	ENSCCAG00000036033	PRDM4	100	97.878	Cebus_capucinus
ENSPTIG00000005847	PRDM4	100	97.503	ENSCATG00000044797	PRDM4	100	97.503	Cercocebus_atys
ENSPTIG00000005847	PRDM4	99	92.662	ENSCLAG00000007545	PRDM4	100	92.910	Chinchilla_lanigera
ENSPTIG00000005847	PRDM4	100	97.753	ENSCSAG00000002896	PRDM4	100	97.753	Chlorocebus_sabaeus
ENSPTIG00000005847	PRDM4	76	96.364	ENSCHOG00000001744	PRDM4	86	96.364	Choloepus_hoffmanni
ENSPTIG00000005847	PRDM4	99	88.708	ENSCPBG00000023187	PRDM4	100	88.206	Chrysemys_picta_bellii
ENSPTIG00000005847	PRDM4	100	97.628	ENSCANG00000021804	PRDM4	100	97.628	Colobus_angolensis_palliatus
ENSPTIG00000005847	PRDM4	99	92.910	ENSCGRG00001015102	-	100	92.662	Cricetulus_griseus_chok1gshd
ENSPTIG00000005847	PRDM4	96	93.032	ENSCGRG00000004044	-	100	92.774	Cricetulus_griseus_crigri
ENSPTIG00000005847	PRDM4	100	96.879	ENSDNOG00000032478	PRDM4	100	96.879	Dasypus_novemcinctus
ENSPTIG00000005847	PRDM4	99	81.430	ENSDORG00000015081	-	100	81.556	Dipodomys_ordii
ENSPTIG00000005847	PRDM4	93	45.658	ENSEBUG00000003775	prdm4	99	45.920	Eptatretus_burgeri
ENSPTIG00000005847	PRDM4	100	98.252	ENSECAG00000015423	PRDM4	100	98.252	Equus_caballus
ENSPTIG00000005847	PRDM4	94	93.875	ENSEEUG00000006569	PRDM4	99	93.609	Erinaceus_europaeus
ENSPTIG00000005847	PRDM4	99	60.510	ENSELUG00000015265	prdm4	99	60.146	Esox_lucius
ENSPTIG00000005847	PRDM4	100	100.000	ENSFCAG00000022478	PRDM4	100	100.000	Felis_catus
ENSPTIG00000005847	PRDM4	99	87.955	ENSFALG00000013342	PRDM4	100	87.578	Ficedula_albicollis
ENSPTIG00000005847	PRDM4	100	87.298	ENSGALG00000012619	PRDM4	100	86.800	Gallus_gallus
ENSPTIG00000005847	PRDM4	99	88.346	ENSGAGG00000002763	PRDM4	95	87.845	Gopherus_agassizii
ENSPTIG00000005847	PRDM4	99	97.750	ENSGGOG00000001244	PRDM4	99	97.750	Gorilla_gorilla
ENSPTIG00000005847	PRDM4	99	93.977	ENSHGLG00000004590	PRDM4	98	93.601	Heterocephalus_glaber_female
ENSPTIG00000005847	PRDM4	99	92.919	ENSHGLG00100007464	PRDM4	100	92.547	Heterocephalus_glaber_male
ENSPTIG00000005847	PRDM4	95	61.010	ENSIPUG00000024162	prdm4	93	61.358	Ictalurus_punctatus
ENSPTIG00000005847	PRDM4	100	97.129	ENSSTOG00000016168	PRDM4	100	97.129	Ictidomys_tridecemlineatus
ENSPTIG00000005847	PRDM4	99	96.226	ENSJJAG00000022448	-	95	93.011	Jaculus_jaculus
ENSPTIG00000005847	PRDM4	99	72.649	ENSLACG00000007452	PRDM4	99	73.391	Latimeria_chalumnae
ENSPTIG00000005847	PRDM4	78	53.247	ENSLOCG00000017092	prdm4	100	53.247	Lepisosteus_oculatus
ENSPTIG00000005847	PRDM4	98	97.589	ENSLAFG00000001483	PRDM4	100	97.589	Loxodonta_africana
ENSPTIG00000005847	PRDM4	100	97.878	ENSMFAG00000041862	PRDM4	100	97.878	Macaca_fascicularis
ENSPTIG00000005847	PRDM4	100	97.878	ENSMMUG00000015550	PRDM4	100	97.878	Macaca_mulatta
ENSPTIG00000005847	PRDM4	100	97.628	ENSMNEG00000032319	PRDM4	100	97.628	Macaca_nemestrina
ENSPTIG00000005847	PRDM4	100	97.753	ENSMLEG00000039607	PRDM4	100	97.753	Mandrillus_leucophaeus
ENSPTIG00000005847	PRDM4	99	80.000	ENSMGAG00000012815	PRDM4	100	79.500	Meleagris_gallopavo
ENSPTIG00000005847	PRDM4	100	96.754	ENSMICG00000007807	PRDM4	100	96.754	Microcebus_murinus
ENSPTIG00000005847	PRDM4	99	93.860	ENSMOCG00000000753	Prdm4	99	93.609	Microtus_ochrogaster
ENSPTIG00000005847	PRDM4	99	94.479	ENSMUSG00000035529	Prdm4	100	94.228	Mus_musculus
ENSPTIG00000005847	PRDM4	99	93.852	MGP_PahariEiJ_G0031398	Prdm4	100	93.901	Mus_pahari
ENSPTIG00000005847	PRDM4	99	95.107	MGP_SPRETEiJ_G0016505	Prdm4	100	95.172	Mus_spretus
ENSPTIG00000005847	PRDM4	99	92.893	ENSMPUG00000012238	PRDM4	99	92.893	Mustela_putorius_furo
ENSPTIG00000005847	PRDM4	99	97.870	ENSMLUG00000000767	PRDM4	99	97.870	Myotis_lucifugus
ENSPTIG00000005847	PRDM4	99	96.110	ENSNGAG00000018627	Prdm4	100	96.110	Nannospalax_galili
ENSPTIG00000005847	PRDM4	100	97.753	ENSNLEG00000006748	PRDM4	100	97.753	Nomascus_leucogenys
ENSPTIG00000005847	PRDM4	89	90.141	ENSMEUG00000004495	PRDM4	89	90.141	Notamacropus_eugenii
ENSPTIG00000005847	PRDM4	88	95.833	ENSOPRG00000010192	PRDM4	89	95.833	Ochotona_princeps
ENSPTIG00000005847	PRDM4	99	90.750	ENSODEG00000014750	PRDM4	99	90.625	Octodon_degus
ENSPTIG00000005847	PRDM4	100	91.386	ENSOANG00000005526	PRDM4	100	91.386	Ornithorhynchus_anatinus
ENSPTIG00000005847	PRDM4	93	97.282	ENSOCUG00000012859	PRDM4	96	97.282	Oryctolagus_cuniculus
ENSPTIG00000005847	PRDM4	99	97.867	ENSOGAG00000011945	PRDM4	100	97.867	Otolemur_garnettii
ENSPTIG00000005847	PRDM4	100	97.878	ENSOARG00000017955	PRDM4	100	97.878	Ovis_aries
ENSPTIG00000005847	PRDM4	100	97.878	ENSPPAG00000038438	PRDM4	100	97.878	Pan_paniscus
ENSPTIG00000005847	PRDM4	100	100.000	ENSPPRG00000004144	PRDM4	100	100.000	Panthera_pardus
ENSPTIG00000005847	PRDM4	100	97.878	ENSPTRG00000005400	PRDM4	100	97.878	Pan_troglodytes
ENSPTIG00000005847	PRDM4	100	97.878	ENSPANG00000022084	PRDM4	100	97.878	Papio_anubis
ENSPTIG00000005847	PRDM4	99	60.285	ENSPKIG00000000875	prdm4	99	60.285	Paramormyrops_kingsleyae
ENSPTIG00000005847	PRDM4	91	82.510	ENSPSIG00000012066	PRDM4	100	82.510	Pelodiscus_sinensis
ENSPTIG00000005847	PRDM4	99	95.358	ENSPEMG00000014598	Prdm4	100	95.358	Peromyscus_maniculatus_bairdii
ENSPTIG00000005847	PRDM4	100	89.179	ENSPCIG00000009471	PRDM4	100	89.179	Phascolarctos_cinereus
ENSPTIG00000005847	PRDM4	100	98.002	ENSPPYG00000004913	PRDM4	100	98.002	Pongo_abelii
ENSPTIG00000005847	PRDM4	83	100.000	ENSPCAG00000009987	PRDM4	83	100.000	Procavia_capensis
ENSPTIG00000005847	PRDM4	100	96.754	ENSPCOG00000021060	PRDM4	100	96.754	Propithecus_coquereli
ENSPTIG00000005847	PRDM4	100	97.506	ENSPVAG00000001596	PRDM4	100	97.506	Pteropus_vampyrus
ENSPTIG00000005847	PRDM4	99	94.236	ENSRNOG00000004962	Prdm4	100	93.860	Rattus_norvegicus
ENSPTIG00000005847	PRDM4	100	97.628	ENSRBIG00000035488	PRDM4	100	97.628	Rhinopithecus_bieti
ENSPTIG00000005847	PRDM4	100	97.753	ENSRROG00000012779	PRDM4	100	97.753	Rhinopithecus_roxellana
ENSPTIG00000005847	PRDM4	100	97.753	ENSSBOG00000000403	PRDM4	100	97.753	Saimiri_boliviensis_boliviensis
ENSPTIG00000005847	PRDM4	99	63.793	ENSSFOG00015023358	prdm4	99	63.255	Scleropages_formosus
ENSPTIG00000005847	PRDM4	100	98.127	ENSSSCG00000000160	PRDM4	100	98.127	Sus_scrofa
ENSPTIG00000005847	PRDM4	99	88.095	ENSTGUG00000010962	-	99	87.719	Taeniopygia_guttata
ENSPTIG00000005847	PRDM4	73	90.273	ENSTBEG00000001732	PRDM4	84	90.273	Tupaia_belangeri
ENSPTIG00000005847	PRDM4	100	97.503	ENSTTRG00000011056	PRDM4	100	97.503	Tursiops_truncatus
ENSPTIG00000005847	PRDM4	100	99.376	ENSUAMG00000022796	PRDM4	100	99.376	Ursus_americanus
ENSPTIG00000005847	PRDM4	100	99.376	ENSUMAG00000017231	PRDM4	100	99.376	Ursus_maritimus
ENSPTIG00000005847	PRDM4	99	98.620	ENSVPAG00000002215	PRDM4	100	98.620	Vicugna_pacos
ENSPTIG00000005847	PRDM4	100	99.001	ENSVVUG00000023397	PRDM4	100	99.001	Vulpes_vulpes