EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPTIG00000006524 (Gene tree)
Gene ID
102954151
Gene Symbol
PABPC1L
Alias
-
Full Name
poly(A) binding protein cytoplasmic 1 like
Gene Type
protein_coding
Species
Panthera_tigris_altaica
Status
putative
Strand
Plus strand
Length
20929 bases
Position
chrKE721700.1:6149926-6170854
Accession
102954151
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPTIP00000003973PABPPF00658.183.8e-2711
ENSPTIP00000003973RRM_5PF13893.61.5e-0811
ENSPTIP00000003973RRM_1PF00076.223.5e-9014
ENSPTIP00000003973RRM_1PF00076.223.5e-9024
ENSPTIP00000003973RRM_1PF00076.223.5e-9034
ENSPTIP00000003973RRM_1PF00076.223.5e-9044
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPTIT00000007690PABPC1L-2011812XM_007077809ENSPTIP00000003973603 (aa)XP_007077871-
Gene Model
Click here to download ENSPTIG00000006524's gene model file
Pathways
Pathway IDPathway NameSource
ptg03013RNA transportKEGG
ptg03015mRNA surveillance pathwayKEGG
ptg03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000006524's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPTIG00000006524PABPC1L5435.616ENSPTIG00000013450CELF39735.616
ENSPTIG00000006524PABPC1L9968.149ENSPTIG00000021083PABPC19368.149
ENSPTIG00000006524PABPC1L6360.674ENSPTIG00000001480PABPC59660.606
ENSPTIG00000006524PABPC1L5730.857ENSPTIG00000016796-8830.857
ENSPTIG00000006524PABPC1L6430.128ENSPTIG00000019051-7030.128
ENSPTIG00000006524PABPC1L6036.508ENSPTIG00000014530SF3B45436.508
ENSPTIG00000006524PABPC1L5730.323ENSPTIG00000015170HNRNPA18830.323
ENSPTIG00000006524PABPC1L6441.667ENSPTIG00000016727ELAVL47941.667
ENSPTIG00000006524PABPC1L6030.526ENSPTIG00000013602ELAVL18830.526
ENSPTIG00000006524PABPC1L9967.532ENSPTIG00000005829PABPC49767.532
ENSPTIG00000006524PABPC1L6365.289ENSPTIG00000010106PABPC4L9865.289
ENSPTIG00000006524PABPC1L6434.940ENSPTIG00000005627ELAVL29234.940
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPTIG00000006524PABPC1L9988.907ENSG00000101104PABPC1L9794.654Homo_sapiens
ENSPTIG00000006524PABPC1L9967.044ENSAPOG00000010842pabpc1l9967.044Acanthochromis_polyacanthus
ENSPTIG00000006524PABPC1L9981.861ENSAMEG00000004099PABPC1L9981.861Ailuropoda_melanoleuca
ENSPTIG00000006524PABPC1L9969.231ENSACIG00000021004-9969.231Amphilophus_citrinellus
ENSPTIG00000006524PABPC1L9967.419ENSAOCG00000006167-9867.419Amphiprion_ocellaris
ENSPTIG00000006524PABPC1L9969.028ENSAPEG00000010558-9481.538Amphiprion_percula
ENSPTIG00000006524PABPC1L9969.508ENSATEG00000007428pabpc1l9869.508Anabas_testudineus
ENSPTIG00000006524PABPC1L9974.225ENSAPLG00000008415PABPC1L9974.146Anas_platyrhynchos
ENSPTIG00000006524PABPC1L9974.554ENSACAG00000011841PABPC1L9774.554Anolis_carolinensis
ENSPTIG00000006524PABPC1L10087.294ENSANAG00000026826PABPC1L9987.294Aotus_nancymaae
ENSPTIG00000006524PABPC1L9967.851ENSACLG00000024791pabpc1l9867.851Astatotilapia_calliptera
ENSPTIG00000006524PABPC1L9971.452ENSAMXG00000013552pabpc1l9971.452Astyanax_mexicanus
ENSPTIG00000006524PABPC1L5997.531ENSBTAG00000055300-9697.531Bos_taurus
ENSPTIG00000006524PABPC1L6879.787ENSBTAG00000016849PABPC1L8579.787Bos_taurus
ENSPTIG00000006524PABPC1L6077.976ENSCJAG00000038506-9777.976Callithrix_jacchus
ENSPTIG00000006524PABPC1L10087.459ENSCJAG00000017628PABPC1L9987.459Callithrix_jacchus
ENSPTIG00000006524PABPC1L9978.750ENSCAFG00000009573PABPC1L9978.750Canis_familiaris
ENSPTIG00000006524PABPC1L9993.854ENSCAFG00020013828PABPC1L9993.854Canis_lupus_dingo
ENSPTIG00000006524PABPC1L9888.644ENSCHIG00000025759PABPC1L9088.644Capra_hircus
ENSPTIG00000006524PABPC1L10085.149ENSTSYG00000006645PABPC1L9985.149Carlito_syrichta
ENSPTIG00000006524PABPC1L9978.637ENSCAPG00000014519PABPC1L9978.637Cavia_aperea
ENSPTIG00000006524PABPC1L9982.131ENSCPOG00000013633PABPC1L9982.131Cavia_porcellus
ENSPTIG00000006524PABPC1L10086.964ENSCCAG00000023338PABPC1L9986.964Cebus_capucinus
ENSPTIG00000006524PABPC1L9988.742ENSCATG00000034065PABPC1L9888.742Cercocebus_atys
ENSPTIG00000006524PABPC1L9982.787ENSCLAG00000005298PABPC1L9982.623Chinchilla_lanigera
ENSPTIG00000006524PABPC1L9988.576ENSCSAG00000014242PABPC1L9888.576Chlorocebus_sabaeus
ENSPTIG00000006524PABPC1L5479.545ENSCPBG00000007810-8179.545Chrysemys_picta_bellii
ENSPTIG00000006524PABPC1L7283.257ENSCPBG00000017755-9883.257Chrysemys_picta_bellii
ENSPTIG00000006524PABPC1L8872.043ENSCING00000002796-9751.329Ciona_intestinalis
ENSPTIG00000006524PABPC1L9857.973ENSCSAVG00000003102-10080.822Ciona_savignyi
ENSPTIG00000006524PABPC1L9959.516ENSCSAVG00000004246-9660.235Ciona_savignyi
ENSPTIG00000006524PABPC1L9984.150ENSCANG00000037530PABPC1L9884.150Colobus_angolensis_palliatus
ENSPTIG00000006524PABPC1L9977.063ENSCGRG00001021938Pabpc1l9977.063Cricetulus_griseus_chok1gshd
ENSPTIG00000006524PABPC1L9977.063ENSCGRG00000007946Pabpc1l9977.063Cricetulus_griseus_crigri
ENSPTIG00000006524PABPC1L9965.333ENSCSEG00000021295pabpc1l9965.333Cynoglossus_semilaevis
ENSPTIG00000006524PABPC1L9968.994ENSCVAG00000015943-8287.903Cyprinodon_variegatus
ENSPTIG00000006524PABPC1L9971.197ENSDARG00000002597pabpc1l8689.431Danio_rerio
ENSPTIG00000006524PABPC1L9989.517ENSDNOG00000048450PABPC1L9889.517Dasypus_novemcinctus
ENSPTIG00000006524PABPC1L9986.093ENSDORG00000001067Pabpc1l9986.093Dipodomys_ordii
ENSPTIG00000006524PABPC1L9592.469ENSETEG00000009969PABPC1L7092.469Echinops_telfairi
ENSPTIG00000006524PABPC1L5877.833ENSEASG00005023407-8177.833Equus_asinus_asinus
ENSPTIG00000006524PABPC1L5996.914ENSEASG00005023408-10096.914Equus_asinus_asinus
ENSPTIG00000006524PABPC1L6889.035ENSECAG00000040139-8289.035Equus_caballus
ENSPTIG00000006524PABPC1L9986.258ENSEEUG00000005978PABPC1L9986.258Erinaceus_europaeus
ENSPTIG00000006524PABPC1L9970.626ENSELUG00000001811pabpc1l9870.626Esox_lucius
ENSPTIG00000006524PABPC1L99100.000ENSFCAG00000011692PABPC1L99100.000Felis_catus
ENSPTIG00000006524PABPC1L8476.998ENSFALG00000005372PABPC1L8676.998Ficedula_albicollis
ENSPTIG00000006524PABPC1L9982.013ENSFDAG00000008291PABPC1L9982.013Fukomys_damarensis
ENSPTIG00000006524PABPC1L9969.805ENSFHEG00000003398pabpc1l9869.805Fundulus_heteroclitus
ENSPTIG00000006524PABPC1L9969.357ENSGMOG00000004437pabpc1l9869.344Gadus_morhua
ENSPTIG00000006524PABPC1L9970.396ENSGALG00000004123PABPC1L9884.672Gallus_gallus
ENSPTIG00000006524PABPC1L9965.138ENSGAFG00000021057pabpc1l9965.138Gambusia_affinis
ENSPTIG00000006524PABPC1L9967.363ENSGACG00000002792pabpc1l9967.363Gasterosteus_aculeatus
ENSPTIG00000006524PABPC1L9976.299ENSGAGG00000000589PABPC1L9776.299Gopherus_agassizii
ENSPTIG00000006524PABPC1L9988.907ENSGGOG00000004584PABPC1L9888.907Gorilla_gorilla
ENSPTIG00000006524PABPC1L9967.690ENSHBUG00000006134pabpc1l9867.690Haplochromis_burtoni
ENSPTIG00000006524PABPC1L9983.908ENSHGLG00000008434PABPC1L9983.744Heterocephalus_glaber_female
ENSPTIG00000006524PABPC1L9983.908ENSHGLG00100012151PABPC1L9983.744Heterocephalus_glaber_male
ENSPTIG00000006524PABPC1L6183.626ENSHGLG00100019506-9683.626Heterocephalus_glaber_male
ENSPTIG00000006524PABPC1L9967.780ENSHCOG00000009270pabpc1l9967.780Hippocampus_comes
ENSPTIG00000006524PABPC1L6160.345ENSIPUG00000006760-8860.345Ictalurus_punctatus
ENSPTIG00000006524PABPC1L6160.920ENSIPUG00000006780-8560.920Ictalurus_punctatus
ENSPTIG00000006524PABPC1L9972.609ENSIPUG00000012602pabpc1l9872.609Ictalurus_punctatus
ENSPTIG00000006524PABPC1L5365.854ENSIPUG00000005537-9865.854Ictalurus_punctatus
ENSPTIG00000006524PABPC1L9987.086ENSSTOG00000003739PABPC1L9987.086Ictidomys_tridecemlineatus
ENSPTIG00000006524PABPC1L9968.796ENSJJAG00000022406Pabpc1l9965.902Jaculus_jaculus
ENSPTIG00000006524PABPC1L9969.444ENSKMAG00000016847pabpc1l9969.444Kryptolebias_marmoratus
ENSPTIG00000006524PABPC1L9966.826ENSLBEG00000010084pabpc1l9866.826Labrus_bergylta
ENSPTIG00000006524PABPC1L9969.856ENSLACG00000005762PABPC1L9871.402Latimeria_chalumnae
ENSPTIG00000006524PABPC1L9971.613ENSLOCG00000007519pabpc1l9771.613Lepisosteus_oculatus
ENSPTIG00000006524PABPC1L9984.304ENSLAFG00000003553PABPC1L9984.304Loxodonta_africana
ENSPTIG00000006524PABPC1L9989.073ENSMFAG00000040365PABPC1L9889.073Macaca_fascicularis
ENSPTIG00000006524PABPC1L9986.491ENSMNEG00000032298PABPC1L9886.491Macaca_nemestrina
ENSPTIG00000006524PABPC1L9988.742ENSMLEG00000043139PABPC1L9888.742Mandrillus_leucophaeus
ENSPTIG00000006524PABPC1L9868.040ENSMAMG00000011854pabpc1l9868.040Mastacembelus_armatus
ENSPTIG00000006524PABPC1L9967.851ENSMZEG00005023713pabpc1l9867.851Maylandia_zebra
ENSPTIG00000006524PABPC1L9975.041ENSMGAG00000003674PABPC1L9775.285Meleagris_gallopavo
ENSPTIG00000006524PABPC1L9975.083ENSMOCG00000013186Pabpc1l9975.083Microtus_ochrogaster
ENSPTIG00000006524PABPC1L9968.576ENSMMOG00000020574-8588.618Mola_mola
ENSPTIG00000006524PABPC1L9479.167ENSMODG00000016198PABPC1L9979.258Monodelphis_domestica
ENSPTIG00000006524PABPC1L9767.720ENSMALG00000021622pabpc1l9967.720Monopterus_albus
ENSPTIG00000006524PABPC1L9976.898MGP_CAROLIEiJ_G0024627Pabpc1l9976.898Mus_caroli
ENSPTIG00000006524PABPC1L9976.645ENSMUSG00000054582Pabpc1l9976.645Mus_musculus
ENSPTIG00000006524PABPC1L9977.483MGP_PahariEiJ_G0026071Pabpc1l9977.483Mus_pahari
ENSPTIG00000006524PABPC1L9976.809MGP_SPRETEiJ_G0025549Pabpc1l9976.809Mus_spretus
ENSPTIG00000006524PABPC1L9992.320ENSMPUG00000017646PABPC1L9992.320Mustela_putorius_furo
ENSPTIG00000006524PABPC1L9881.892ENSMLUG00000006324PABPC1L9781.892Myotis_lucifugus
ENSPTIG00000006524PABPC1L9979.208ENSNGAG00000010458Pabpc1l9879.208Nannospalax_galili
ENSPTIG00000006524PABPC1L9973.558ENSNBRG00000016633pabpc1l9973.558Neolamprologus_brichardi
ENSPTIG00000006524PABPC1L8973.985ENSMEUG00000007905-8873.985Notamacropus_eugenii
ENSPTIG00000006524PABPC1L9985.124ENSOPRG00000011846PABPC1L9985.124Ochotona_princeps
ENSPTIG00000006524PABPC1L5877.124ENSODEG00000002920-9477.124Octodon_degus
ENSPTIG00000006524PABPC1L9975.581ENSODEG00000015482PABPC1L9875.581Octodon_degus
ENSPTIG00000006524PABPC1L9967.851ENSONIG00000017314pabpc1l9867.851Oreochromis_niloticus
ENSPTIG00000006524PABPC1L9067.276ENSOANG00000015793-9967.276Ornithorhynchus_anatinus
ENSPTIG00000006524PABPC1L9977.726ENSOCUG00000003005PABPC1L9977.726Oryctolagus_cuniculus
ENSPTIG00000006524PABPC1L9972.471ENSORLG00000010322pabpc1l9972.471Oryzias_latipes
ENSPTIG00000006524PABPC1L9972.471ENSORLG00020021193pabpc1l9972.471Oryzias_latipes_hni
ENSPTIG00000006524PABPC1L9972.471ENSORLG00015017018pabpc1l9972.471Oryzias_latipes_hsok
ENSPTIG00000006524PABPC1L9964.571ENSOMEG00000010789pabpc1l9964.571Oryzias_melastigma
ENSPTIG00000006524PABPC1L9985.113ENSOGAG00000032999PABPC1L9985.113Otolemur_garnettii
ENSPTIG00000006524PABPC1L9988.852ENSOARG00000004578PABPC1L9888.852Ovis_aries
ENSPTIG00000006524PABPC1L9988.742ENSPPAG00000039677PABPC1L9888.742Pan_paniscus
ENSPTIG00000006524PABPC1L6385.535ENSPPRG00000019327-9685.535Panthera_pardus
ENSPTIG00000006524PABPC1L6394.340ENSPTRG00000013531PABPC1L9794.340Pan_troglodytes
ENSPTIG00000006524PABPC1L9988.742ENSPANG00000018788PABPC1L9888.742Papio_anubis
ENSPTIG00000006524PABPC1L5384.677ENSPKIG00000016810-8884.677Paramormyrops_kingsleyae
ENSPTIG00000006524PABPC1L9971.683ENSPKIG00000007322pabpc1l9871.683Paramormyrops_kingsleyae
ENSPTIG00000006524PABPC1L6884.428ENSPSIG00000013289PABPC1L9784.428Pelodiscus_sinensis
ENSPTIG00000006524PABPC1L7367.337ENSPMGG00000023121-9367.337Periophthalmus_magnuspinnatus
ENSPTIG00000006524PABPC1L6386.508ENSPMGG00000023117pabpc1l8886.508Periophthalmus_magnuspinnatus
ENSPTIG00000006524PABPC1L9976.783ENSPEMG00000020671Pabpc1l9976.949Peromyscus_maniculatus_bairdii
ENSPTIG00000006524PABPC1L9970.164ENSPFOG00000013241pabpc1l9968.921Poecilia_formosa
ENSPTIG00000006524PABPC1L9968.760ENSPLAG00000017490-9968.760Poecilia_latipinna
ENSPTIG00000006524PABPC1L5388.710ENSPLAG00000023686-8788.710Poecilia_latipinna
ENSPTIG00000006524PABPC1L5388.710ENSPMEG00000009185-8488.710Poecilia_mexicana
ENSPTIG00000006524PABPC1L9969.144ENSPMEG00000007677pabpc1l9969.144Poecilia_mexicana
ENSPTIG00000006524PABPC1L6777.340ENSPREG00000015886pabpc1l9877.340Poecilia_reticulata
ENSPTIG00000006524PABPC1L9988.907ENSPPYG00000011042PABPC1L9888.907Pongo_abelii
ENSPTIG00000006524PABPC1L6294.828ENSPCAG00000011787-7394.828Procavia_capensis
ENSPTIG00000006524PABPC1L9987.521ENSPCOG00000020630PABPC1L9987.521Propithecus_coquereli
ENSPTIG00000006524PABPC1L9988.704ENSPVAG00000012663PABPC1L9988.704Pteropus_vampyrus
ENSPTIG00000006524PABPC1L9973.558ENSPNYG00000004101pabpc1l9973.558Pundamilia_nyererei
ENSPTIG00000006524PABPC1L9964.620ENSPNAG00000021248pabpc1l9864.620Pygocentrus_nattereri
ENSPTIG00000006524PABPC1L9976.898ENSRNOG00000012750Pabpc1l9877.063Rattus_norvegicus
ENSPTIG00000006524PABPC1L9988.411ENSRBIG00000035381PABPC1L9888.411Rhinopithecus_bieti
ENSPTIG00000006524PABPC1L9988.245ENSRROG00000044498PABPC1L9888.245Rhinopithecus_roxellana
ENSPTIG00000006524PABPC1L10087.294ENSSBOG00000009532-9987.294Saimiri_boliviensis_boliviensis
ENSPTIG00000006524PABPC1L9972.541ENSSHAG00000011446PABPC1L10072.541Sarcophilus_harrisii
ENSPTIG00000006524PABPC1L9972.846ENSSFOG00015017304pabpc1l9872.846Scleropages_formosus
ENSPTIG00000006524PABPC1L9967.450ENSSMAG00000010516pabpc1l8888.525Scophthalmus_maximus
ENSPTIG00000006524PABPC1L9968.700ENSSDUG00000014743pabpc1l9968.700Seriola_dumerili
ENSPTIG00000006524PABPC1L9975.240ENSSLDG00000006981pabpc1l9578.404Seriola_lalandi_dorsalis
ENSPTIG00000006524PABPC1L9973.183ENSSPUG00000004233PABPC1L9773.183Sphenodon_punctatus
ENSPTIG00000006524PABPC1L9965.667ENSSPAG00000017137pabpc1l9865.667Stegastes_partitus
ENSPTIG00000006524PABPC1L9988.391ENSSSCG00000007382PABPC1L9988.391Sus_scrofa
ENSPTIG00000006524PABPC1L9973.676ENSTGUG00000005114PABPC1L9873.676Taeniopygia_guttata
ENSPTIG00000006524PABPC1L9768.430ENSTRUG00000011085pabpc1l9668.430Takifugu_rubripes
ENSPTIG00000006524PABPC1L9966.397ENSTNIG00000017903pabpc1l9766.397Tetraodon_nigroviridis
ENSPTIG00000006524PABPC1L9494.755ENSTBEG00000002851PABPC1L7994.755Tupaia_belangeri
ENSPTIG00000006524PABPC1L9488.204ENSTTRG00000007618PABPC1L9988.185Tursiops_truncatus
ENSPTIG00000006524PABPC1L9989.701ENSUAMG00000017682PABPC1L9889.701Ursus_americanus
ENSPTIG00000006524PABPC1L6893.496ENSUMAG00000025436PABPC1L9493.496Ursus_maritimus
ENSPTIG00000006524PABPC1L9996.047ENSVVUG00000018939PABPC1L9996.047Vulpes_vulpes
ENSPTIG00000006524PABPC1L9970.502ENSXETG00000022831pabpc1l9770.502Xenopus_tropicalis
ENSPTIG00000006524PABPC1L9971.663ENSXCOG00000005459pabpc1l9583.704Xiphophorus_couchianus
ENSPTIG00000006524PABPC1L9968.650ENSXMAG00000017135pabpc1l9968.650Xiphophorus_maculatus

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