EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTIG00000007242 (Gene tree)
Gene ID: 102966624
Gene Symbol: SMG7
Alias: -
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Plus strand
Length: 90021 bases
Position: chrKE722206.1:13135392-13225412
Accession: 102966624
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000004953	EST1	PF10374.9	6.7e-25	1	1
ENSPTIP00000004971	EST1	PF10374.9	7e-25	1	1
ENSPTIP00000004953	EST1_DNA_bind	PF10373.9	1.7e-55	1	1
ENSPTIP00000004971	EST1_DNA_bind	PF10373.9	1.7e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000008734	SMG7-203	3534	-	ENSPTIP00000004971	1177 (aa)	-	-
ENSPTIT00000008716	SMG7-202	6004	XM_007096218	ENSPTIP00000004953	1144 (aa)	XP_007096280	-
ENSPTIT00000008611	SMG7-201	219	-	ENSPTIP00000004853	73 (aa)	-	-

Gene Model

Click here to download ENSPTIG00000007242's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptg03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000007242's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000007242	SMG7	100	97.729	ENSG00000116698	SMG7	100	97.884	Homo_sapiens
ENSPTIG00000007242	SMG7	90	73.228	ENSAPOG00000009611	smg7	92	73.885	Acanthochromis_polyacanthus
ENSPTIG00000007242	SMG7	100	98.164	ENSAMEG00000002357	SMG7	100	98.164	Ailuropoda_melanoleuca
ENSPTIG00000007242	SMG7	100	62.457	ENSACIG00000015152	smg7	99	61.737	Amphilophus_citrinellus
ENSPTIG00000007242	SMG7	100	64.890	ENSAOCG00000013538	smg7	97	65.625	Amphiprion_ocellaris
ENSPTIG00000007242	SMG7	100	64.751	ENSAPEG00000007851	smg7	97	65.485	Amphiprion_percula
ENSPTIG00000007242	SMG7	100	62.395	ENSATEG00000006931	smg7	96	62.616	Anabas_testudineus
ENSPTIG00000007242	SMG7	100	85.404	ENSAPLG00000015811	SMG7	96	85.491	Anas_platyrhynchos
ENSPTIG00000007242	SMG7	100	87.706	ENSACAG00000014989	SMG7	96	88.139	Anolis_carolinensis
ENSPTIG00000007242	SMG7	100	97.467	ENSANAG00000028114	SMG7	96	97.467	Aotus_nancymaae
ENSPTIG00000007242	SMG7	100	65.450	ENSACLG00000022079	smg7	97	65.051	Astatotilapia_calliptera
ENSPTIG00000007242	SMG7	100	67.240	ENSAMXG00000020809	smg7	97	67.526	Astyanax_mexicanus
ENSPTIG00000007242	SMG7	100	93.450	ENSBTAG00000008003	SMG7	94	97.263	Bos_taurus
ENSPTIG00000007242	SMG7	100	97.380	ENSCJAG00000005135	SMG7	97	97.380	Callithrix_jacchus
ENSPTIG00000007242	SMG7	100	94.668	ENSCAFG00000013276	SMG7	94	98.630	Canis_familiaris
ENSPTIG00000007242	SMG7	100	98.427	ENSCAFG00020015475	SMG7	96	98.427	Canis_lupus_dingo
ENSPTIG00000007242	SMG7	100	93.362	ENSCHIG00000018192	SMG7	97	96.923	Capra_hircus
ENSPTIG00000007242	SMG7	100	96.856	ENSTSYG00000002667	SMG7	100	96.856	Carlito_syrichta
ENSPTIG00000007242	SMG7	100	93.444	ENSCPOG00000008906	SMG7	96	96.438	Cavia_porcellus
ENSPTIG00000007242	SMG7	100	97.642	ENSCCAG00000028596	SMG7	100	97.642	Cebus_capucinus
ENSPTIG00000007242	SMG7	100	97.904	ENSCATG00000011063	SMG7	100	97.904	Cercocebus_atys
ENSPTIG00000007242	SMG7	100	92.926	ENSCLAG00000010751	SMG7	96	96.718	Chinchilla_lanigera
ENSPTIG00000007242	SMG7	100	93.712	ENSCSAG00000012654	SMG7	94	97.628	Chlorocebus_sabaeus
ENSPTIG00000007242	SMG7	94	86.124	ENSCHOG00000010522	SMG7	99	86.571	Choloepus_hoffmanni
ENSPTIG00000007242	SMG7	100	91.384	ENSCPBG00000015724	SMG7	96	91.471	Chrysemys_picta_bellii
ENSPTIG00000007242	SMG7	100	97.817	ENSCANG00000015680	SMG7	100	97.817	Colobus_angolensis_palliatus
ENSPTIG00000007242	SMG7	100	91.354	ENSCGRG00001013705	Smg7	96	95.442	Cricetulus_griseus_chok1gshd
ENSPTIG00000007242	SMG7	100	91.354	ENSCGRG00000018401	Smg7	95	95.529	Cricetulus_griseus_crigri
ENSPTIG00000007242	SMG7	100	63.078	ENSCVAG00000011842	smg7	98	63.193	Cyprinodon_variegatus
ENSPTIG00000007242	SMG7	100	66.752	ENSDARG00000060767	smg7	97	65.570	Danio_rerio
ENSPTIG00000007242	SMG7	100	92.489	ENSDORG00000007331	Smg7	96	96.263	Dipodomys_ordii
ENSPTIG00000007242	SMG7	97	91.065	ENSETEG00000002654	SMG7	99	95.077	Echinops_telfairi
ENSPTIG00000007242	SMG7	100	94.410	ENSEASG00005006524	SMG7	96	98.268	Equus_asinus_asinus
ENSPTIG00000007242	SMG7	100	94.498	ENSECAG00000004313	SMG7	96	98.467	Equus_caballus
ENSPTIG00000007242	SMG7	98	93.231	ENSEEUG00000002024	SMG7	99	93.316	Erinaceus_europaeus
ENSPTIG00000007242	SMG7	100	66.073	ENSELUG00000010293	smg7	99	64.796	Esox_lucius
ENSPTIG00000007242	SMG7	100	99.660	ENSFCAG00000010900	SMG7	100	99.660	Felis_catus
ENSPTIG00000007242	SMG7	100	86.285	ENSFALG00000003047	SMG7	98	86.372	Ficedula_albicollis
ENSPTIG00000007242	SMG7	100	92.926	ENSFDAG00000012121	SMG7	97	95.212	Fukomys_damarensis
ENSPTIG00000007242	SMG7	100	60.836	ENSFHEG00000011073	smg7	96	61.381	Fundulus_heteroclitus
ENSPTIG00000007242	SMG7	89	74.134	ENSGMOG00000004916	smg7	92	67.540	Gadus_morhua
ENSPTIG00000007242	SMG7	100	85.417	ENSGALG00000004667	SMG7	96	85.503	Gallus_gallus
ENSPTIG00000007242	SMG7	100	61.191	ENSGAFG00000019000	smg7	96	61.263	Gambusia_affinis
ENSPTIG00000007242	SMG7	98	61.719	ENSGACG00000001634	smg7	99	64.493	Gasterosteus_aculeatus
ENSPTIG00000007242	SMG7	100	97.729	ENSGGOG00000002342	SMG7	100	97.729	Gorilla_gorilla
ENSPTIG00000007242	SMG7	100	65.450	ENSHBUG00000003726	smg7	99	68.098	Haplochromis_burtoni
ENSPTIG00000007242	SMG7	100	93.188	ENSHGLG00000009353	SMG7	97	97.051	Heterocephalus_glaber_female
ENSPTIG00000007242	SMG7	100	92.664	ENSHGLG00100009637	-	97	95.300	Heterocephalus_glaber_male
ENSPTIG00000007242	SMG7	100	84.541	ENSHGLG00100004878	-	96	88.605	Heterocephalus_glaber_male
ENSPTIG00000007242	SMG7	100	67.672	ENSIPUG00000016997	smg7	96	67.731	Ictalurus_punctatus
ENSPTIG00000007242	SMG7	100	93.799	ENSSTOG00000000401	SMG7	96	97.630	Ictidomys_tridecemlineatus
ENSPTIG00000007242	SMG7	100	91.004	ENSJJAG00000012351	Smg7	96	94.713	Jaculus_jaculus
ENSPTIG00000007242	SMG7	100	58.998	ENSKMAG00000004900	smg7	99	59.643	Kryptolebias_marmoratus
ENSPTIG00000007242	SMG7	100	62.521	ENSLBEG00000002983	smg7	96	62.606	Labrus_bergylta
ENSPTIG00000007242	SMG7	52	63.000	ENSLBEG00000005220	-	75	64.623	Labrus_bergylta
ENSPTIG00000007242	SMG7	100	75.451	ENSLACG00000000972	SMG7	97	75.758	Latimeria_chalumnae
ENSPTIG00000007242	SMG7	100	68.814	ENSLOCG00000002010	smg7	96	69.013	Lepisosteus_oculatus
ENSPTIG00000007242	SMG7	100	93.013	ENSLAFG00000008186	SMG7	97	96.137	Loxodonta_africana
ENSPTIG00000007242	SMG7	100	97.817	ENSMFAG00000031653	SMG7	100	97.817	Macaca_fascicularis
ENSPTIG00000007242	SMG7	100	97.904	ENSMMUG00000018458	SMG7	97	97.904	Macaca_mulatta
ENSPTIG00000007242	SMG7	100	97.904	ENSMNEG00000034798	SMG7	100	97.904	Macaca_nemestrina
ENSPTIG00000007242	SMG7	100	97.904	ENSMLEG00000037170	SMG7	100	97.904	Mandrillus_leucophaeus
ENSPTIG00000007242	SMG7	88	63.767	ENSMAMG00000018733	smg7	84	64.407	Mastacembelus_armatus
ENSPTIG00000007242	SMG7	100	65.313	ENSMZEG00005015247	smg7	97	65.051	Maylandia_zebra
ENSPTIG00000007242	SMG7	99	85.292	ENSMGAG00000001561	SMG7	97	85.379	Meleagris_gallopavo
ENSPTIG00000007242	SMG7	100	92.489	ENSMAUG00000019484	Smg7	96	96.310	Mesocricetus_auratus
ENSPTIG00000007242	SMG7	100	96.154	ENSMICG00000007145	SMG7	95	97.991	Microcebus_murinus
ENSPTIG00000007242	SMG7	100	92.314	ENSMOCG00000020748	Smg7	96	95.716	Microtus_ochrogaster
ENSPTIG00000007242	SMG7	100	60.754	ENSMMOG00000001524	smg7	96	61.030	Mola_mola
ENSPTIG00000007242	SMG7	93	88.868	ENSMODG00000007139	SMG7	96	88.962	Monodelphis_domestica
ENSPTIG00000007242	SMG7	97	69.154	ENSMALG00000000061	smg7	90	69.652	Monopterus_albus
ENSPTIG00000007242	SMG7	100	91.354	MGP_CAROLIEiJ_G0014704	Smg7	96	95.077	Mus_caroli
ENSPTIG00000007242	SMG7	100	91.266	ENSMUSG00000042772	Smg7	96	95.351	Mus_musculus
ENSPTIG00000007242	SMG7	100	91.354	MGP_PahariEiJ_G0027940	Smg7	96	95.442	Mus_pahari
ENSPTIG00000007242	SMG7	100	91.354	MGP_SPRETEiJ_G0015511	Smg7	96	95.442	Mus_spretus
ENSPTIG00000007242	SMG7	100	94.755	ENSMPUG00000011732	SMG7	95	97.200	Mustela_putorius_furo
ENSPTIG00000007242	SMG7	100	93.275	ENSMLUG00000015417	SMG7	97	96.923	Myotis_lucifugus
ENSPTIG00000007242	SMG7	100	92.308	ENSNGAG00000009836	Smg7	96	95.338	Nannospalax_galili
ENSPTIG00000007242	SMG7	100	58.924	ENSNBRG00000024343	smg7	96	70.952	Neolamprologus_brichardi
ENSPTIG00000007242	SMG7	100	97.991	ENSNLEG00000018018	SMG7	100	97.991	Nomascus_leucogenys
ENSPTIG00000007242	SMG7	71	92.276	ENSMEUG00000004681	SMG7	77	85.914	Notamacropus_eugenii
ENSPTIG00000007242	SMG7	98	81.670	ENSOPRG00000013942	SMG7	99	81.967	Ochotona_princeps
ENSPTIG00000007242	SMG7	100	92.838	ENSODEG00000010390	SMG7	96	96.627	Octodon_degus
ENSPTIG00000007242	SMG7	100	62.585	ENSONIG00000000277	smg7	96	62.351	Oreochromis_niloticus
ENSPTIG00000007242	SMG7	100	87.565	ENSOANG00000000994	SMG7	97	91.659	Ornithorhynchus_anatinus
ENSPTIG00000007242	SMG7	100	86.114	ENSOCUG00000005887	SMG7	90	90.372	Oryctolagus_cuniculus
ENSPTIG00000007242	SMG7	100	63.194	ENSORLG00000007314	smg7	78	84.706	Oryzias_latipes
ENSPTIG00000007242	SMG7	100	63.535	ENSORLG00020015779	smg7	78	84.706	Oryzias_latipes_hni
ENSPTIG00000007242	SMG7	100	63.064	ENSORLG00015012289	smg7	96	63.823	Oryzias_latipes_hsok
ENSPTIG00000007242	SMG7	100	63.234	ENSOMEG00000002328	smg7	96	63.605	Oryzias_melastigma
ENSPTIG00000007242	SMG7	99	94.611	ENSOGAG00000003107	SMG7	99	94.183	Otolemur_garnettii
ENSPTIG00000007242	SMG7	100	93.188	ENSOARG00000001352	SMG7	94	96.989	Ovis_aries
ENSPTIG00000007242	SMG7	100	97.904	ENSPPAG00000031619	SMG7	100	97.904	Pan_paniscus
ENSPTIG00000007242	SMG7	100	100.000	ENSPPRG00000011222	SMG7	100	100.000	Panthera_pardus
ENSPTIG00000007242	SMG7	100	97.904	ENSPTRG00000001764	SMG7	100	97.904	Pan_troglodytes
ENSPTIG00000007242	SMG7	99	95.474	ENSPANG00000004520	SMG7	99	95.474	Papio_anubis
ENSPTIG00000007242	SMG7	100	65.285	ENSPKIG00000007242	smg7	96	68.812	Paramormyrops_kingsleyae
ENSPTIG00000007242	SMG7	100	87.260	ENSPSIG00000012201	SMG7	97	89.937	Pelodiscus_sinensis
ENSPTIG00000007242	SMG7	59	57.000	ENSPMGG00000021833	smg7	81	71.681	Periophthalmus_magnuspinnatus
ENSPTIG00000007242	SMG7	100	90.568	ENSPEMG00000011315	Smg7	96	94.622	Peromyscus_maniculatus_bairdii
ENSPTIG00000007242	SMG7	100	92.932	ENSPCIG00000003786	SMG7	96	93.019	Phascolarctos_cinereus
ENSPTIG00000007242	SMG7	100	62.881	ENSPFOG00000019219	smg7	97	62.997	Poecilia_formosa
ENSPTIG00000007242	SMG7	100	60.799	ENSPLAG00000001446	smg7	96	60.629	Poecilia_latipinna
ENSPTIG00000007242	SMG7	97	60.123	ENSPMEG00000005218	smg7	99	59.367	Poecilia_mexicana
ENSPTIG00000007242	SMG7	88	60.700	ENSPREG00000019039	smg7	92	60.474	Poecilia_reticulata
ENSPTIG00000007242	SMG7	100	93.712	ENSPPYG00000000427	SMG7	96	93.712	Pongo_abelii
ENSPTIG00000007242	SMG7	97	83.304	ENSPCAG00000008360	SMG7	100	83.131	Procavia_capensis
ENSPTIG00000007242	SMG7	99	96.068	ENSPCOG00000011996	SMG7	99	96.068	Propithecus_coquereli
ENSPTIG00000007242	SMG7	98	86.301	ENSPVAG00000000851	SMG7	99	86.301	Pteropus_vampyrus
ENSPTIG00000007242	SMG7	100	65.306	ENSPNYG00000007643	smg7	97	64.821	Pundamilia_nyererei
ENSPTIG00000007242	SMG7	100	67.038	ENSPNAG00000011374	smg7	95	70.707	Pygocentrus_nattereri
ENSPTIG00000007242	SMG7	100	94.154	ENSRNOG00000027962	Smg7	100	96.296	Rattus_norvegicus
ENSPTIG00000007242	SMG7	100	97.817	ENSRBIG00000036316	SMG7	100	97.817	Rhinopithecus_bieti
ENSPTIG00000007242	SMG7	100	97.817	ENSRROG00000035719	SMG7	100	97.817	Rhinopithecus_roxellana
ENSPTIG00000007242	SMG7	100	97.467	ENSSBOG00000023454	SMG7	100	97.467	Saimiri_boliviensis_boliviensis
ENSPTIG00000007242	SMG7	100	88.656	ENSSHAG00000013147	SMG7	96	88.666	Sarcophilus_harrisii
ENSPTIG00000007242	SMG7	100	68.826	ENSSFOG00015017252	smg7	96	76.316	Scleropages_formosus
ENSPTIG00000007242	SMG7	100	65.756	ENSSMAG00000006067	smg7	96	65.814	Scophthalmus_maximus
ENSPTIG00000007242	SMG7	100	61.752	ENSSDUG00000017543	smg7	96	62.226	Seriola_dumerili
ENSPTIG00000007242	SMG7	100	85.292	ENSSPUG00000002064	SMG7	96	85.379	Sphenodon_punctatus
ENSPTIG00000007242	SMG7	100	64.488	ENSSPAG00000008733	smg7	96	64.169	Stegastes_partitus
ENSPTIG00000007242	SMG7	100	94.236	ENSSSCG00000015558	SMG7	96	98.086	Sus_scrofa
ENSPTIG00000007242	SMG7	100	85.330	ENSTGUG00000003928	SMG7	97	85.417	Taeniopygia_guttata
ENSPTIG00000007242	SMG7	100	60.884	ENSTNIG00000002802	smg7	97	62.815	Tetraodon_nigroviridis
ENSPTIG00000007242	SMG7	78	96.186	ENSTBEG00000003220	SMG7	81	92.489	Tupaia_belangeri
ENSPTIG00000007242	SMG7	98	95.730	ENSTTRG00000014778	SMG7	100	95.730	Tursiops_truncatus
ENSPTIG00000007242	SMG7	100	90.472	ENSUAMG00000017473	SMG7	100	90.472	Ursus_americanus
ENSPTIG00000007242	SMG7	100	94.755	ENSUMAG00000016389	SMG7	97	98.775	Ursus_maritimus
ENSPTIG00000007242	SMG7	100	94.843	ENSVVUG00000008976	SMG7	96	98.723	Vulpes_vulpes
ENSPTIG00000007242	SMG7	100	68.096	ENSXETG00000012528	smg7	96	68.045	Xenopus_tropicalis
ENSPTIG00000007242	SMG7	100	61.230	ENSXMAG00000007123	smg7	96	61.230	Xiphophorus_maculatus