EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPTIG00000007506 (Gene tree)
Gene ID: 102968496
Gene Symbol: USB1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Plus strand
Length: 10876 bases
Position: chrKE721923.1:2791398-2802273
Accession: 102968496
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000005222	HVSL	PF09749.9	9.2e-62	1	1
ENSPTIP00000005248	HVSL	PF09749.9	4.3e-50	1	2
ENSPTIP00000005248	HVSL	PF09749.9	4.3e-50	2	2
ENSPTIP00000005257	HVSL	PF09749.9	1.4e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000009000	USB1-201	2267	XM_007090219	ENSPTIP00000005222	267 (aa)	XP_007090281	UPI00042C2B88
ENSPTIT00000009034	USB1-203	483	-	ENSPTIP00000005257	160 (aa)	-	-
ENSPTIT00000009024	USB1-202	750	-	ENSPTIP00000005248	249 (aa)	-	-

Gene Model

Click here to download ENSPTIG00000007506's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000007506's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000007506	USB1	100	84.644	ENSG00000103005	USB1	100	88.318	Homo_sapiens
ENSPTIG00000007506	USB1	98	45.878	ENSAPOG00000011942	usb1	83	49.356	Acanthochromis_polyacanthus
ENSPTIG00000007506	USB1	100	88.476	ENSAMEG00000017205	USB1	100	88.848	Ailuropoda_melanoleuca
ENSPTIG00000007506	USB1	85	53.097	ENSACIG00000012234	usb1	83	53.097	Amphilophus_citrinellus
ENSPTIG00000007506	USB1	95	48.617	ENSAOCG00000014831	usb1	82	50.644	Amphiprion_ocellaris
ENSPTIG00000007506	USB1	95	49.012	ENSAPEG00000000296	usb1	82	51.073	Amphiprion_percula
ENSPTIG00000007506	USB1	95	49.802	ENSATEG00000009348	usb1	86	50.000	Anabas_testudineus
ENSPTIG00000007506	USB1	84	69.604	ENSAPLG00000002756	USB1	100	69.469	Anas_platyrhynchos
ENSPTIG00000007506	USB1	85	61.572	ENSACAG00000015481	USB1	100	61.572	Anolis_carolinensis
ENSPTIG00000007506	USB1	100	83.895	ENSANAG00000035640	USB1	100	83.895	Aotus_nancymaae
ENSPTIG00000007506	USB1	88	50.427	ENSACLG00000020586	usb1	83	50.427	Astatotilapia_calliptera
ENSPTIG00000007506	USB1	84	50.222	ENSAMXG00000040146	usb1	75	50.222	Astyanax_mexicanus
ENSPTIG00000007506	USB1	100	84.270	ENSBTAG00000015758	USB1	100	84.270	Bos_taurus
ENSPTIG00000007506	USB1	100	85.393	ENSCJAG00000011733	USB1	100	85.393	Callithrix_jacchus
ENSPTIG00000007506	USB1	99	85.662	ENSCAFG00000008556	USB1	73	86.029	Canis_familiaris
ENSPTIG00000007506	USB1	99	85.714	ENSCAFG00020009263	USB1	99	80.797	Canis_lupus_dingo
ENSPTIG00000007506	USB1	100	83.521	ENSCHIG00000024290	USB1	100	83.521	Capra_hircus
ENSPTIG00000007506	USB1	100	88.015	ENSTSYG00000006997	USB1	100	88.015	Carlito_syrichta
ENSPTIG00000007506	USB1	86	71.495	ENSCAPG00000009057	USB1	100	71.495	Cavia_aperea
ENSPTIG00000007506	USB1	100	81.716	ENSCPOG00000014325	USB1	100	80.970	Cavia_porcellus
ENSPTIG00000007506	USB1	100	84.644	ENSCCAG00000022132	USB1	100	84.644	Cebus_capucinus
ENSPTIG00000007506	USB1	100	86.142	ENSCATG00000032174	USB1	100	86.142	Cercocebus_atys
ENSPTIG00000007506	USB1	66	87.500	ENSCLAG00000007363	USB1	100	87.500	Chinchilla_lanigera
ENSPTIG00000007506	USB1	100	86.891	ENSCSAG00000004783	USB1	100	86.891	Chlorocebus_sabaeus
ENSPTIG00000007506	USB1	92	64.082	ENSCPBG00000026943	USB1	100	61.151	Chrysemys_picta_bellii
ENSPTIG00000007506	USB1	84	30.932	ENSCING00000011490	-	86	30.932	Ciona_intestinalis
ENSPTIG00000007506	USB1	82	30.837	ENSCSAVG00000000894	-	81	30.837	Ciona_savignyi
ENSPTIG00000007506	USB1	100	85.393	ENSCANG00000037135	USB1	100	85.393	Colobus_angolensis_palliatus
ENSPTIG00000007506	USB1	100	82.836	ENSCGRG00001011243	USB1	100	82.836	Cricetulus_griseus_chok1gshd
ENSPTIG00000007506	USB1	100	82.836	ENSCGRG00000013252	USB1	100	82.836	Cricetulus_griseus_crigri
ENSPTIG00000007506	USB1	98	47.810	ENSCSEG00000013881	usb1	84	50.427	Cynoglossus_semilaevis
ENSPTIG00000007506	USB1	84	49.123	ENSCVAG00000009252	usb1	97	49.561	Cyprinodon_variegatus
ENSPTIG00000007506	USB1	84	50.446	ENSDARG00000003841	usb1	81	50.446	Danio_rerio
ENSPTIG00000007506	USB1	100	79.775	ENSDORG00000001888	Usb1	100	79.775	Dipodomys_ordii
ENSPTIG00000007506	USB1	76	37.864	FBgn0037713	CG16790	78	37.864	Drosophila_melanogaster
ENSPTIG00000007506	USB1	100	71.161	ENSETEG00000019682	USB1	100	71.161	Echinops_telfairi
ENSPTIG00000007506	USB1	83	50.000	ENSEBUG00000005889	usb1	78	50.000	Eptatretus_burgeri
ENSPTIG00000007506	USB1	100	87.640	ENSEASG00005005484	USB1	100	87.640	Equus_asinus_asinus
ENSPTIG00000007506	USB1	100	87.266	ENSECAG00000019493	USB1	91	87.266	Equus_caballus
ENSPTIG00000007506	USB1	66	80.114	ENSEEUG00000000154	USB1	100	61.049	Erinaceus_europaeus
ENSPTIG00000007506	USB1	88	47.234	ENSELUG00000010974	usb1	86	47.234	Esox_lucius
ENSPTIG00000007506	USB1	100	98.502	ENSFCAG00000002693	USB1	100	98.502	Felis_catus
ENSPTIG00000007506	USB1	100	59.124	ENSFALG00000006876	USB1	99	62.082	Ficedula_albicollis
ENSPTIG00000007506	USB1	100	85.019	ENSFDAG00000010052	USB1	100	85.019	Fukomys_damarensis
ENSPTIG00000007506	USB1	87	47.712	ENSFHEG00000012334	usb1	80	49.505	Fundulus_heteroclitus
ENSPTIG00000007506	USB1	84	48.879	ENSGMOG00000004228	usb1	99	48.879	Gadus_morhua
ENSPTIG00000007506	USB1	84	67.411	ENSGALG00000035604	USB1	100	63.060	Gallus_gallus
ENSPTIG00000007506	USB1	98	46.209	ENSGAFG00000021890	usb1	84	49.145	Gambusia_affinis
ENSPTIG00000007506	USB1	93	47.390	ENSGACG00000003257	usb1	84	48.718	Gasterosteus_aculeatus
ENSPTIG00000007506	USB1	100	60.806	ENSGAGG00000022572	USB1	100	60.806	Gopherus_agassizii
ENSPTIG00000007506	USB1	100	85.393	ENSGGOG00000017147	USB1	100	85.393	Gorilla_gorilla
ENSPTIG00000007506	USB1	88	51.282	ENSHBUG00000009823	usb1	83	51.282	Haplochromis_burtoni
ENSPTIG00000007506	USB1	100	85.019	ENSHGLG00000016078	USB1	98	85.019	Heterocephalus_glaber_female
ENSPTIG00000007506	USB1	100	85.019	ENSHGLG00100005562	USB1	98	85.019	Heterocephalus_glaber_male
ENSPTIG00000007506	USB1	81	52.074	ENSHCOG00000015633	usb1	86	52.466	Hippocampus_comes
ENSPTIG00000007506	USB1	98	43.056	ENSIPUG00000008601	usb1	78	53.125	Ictalurus_punctatus
ENSPTIG00000007506	USB1	100	84.982	ENSSTOG00000007548	USB1	100	84.615	Ictidomys_tridecemlineatus
ENSPTIG00000007506	USB1	100	86.142	ENSJJAG00000021859	Usb1	100	86.142	Jaculus_jaculus
ENSPTIG00000007506	USB1	93	47.244	ENSKMAG00000007200	usb1	89	43.478	Kryptolebias_marmoratus
ENSPTIG00000007506	USB1	74	51.010	ENSLBEG00000008452	usb1	64	51.579	Labrus_bergylta
ENSPTIG00000007506	USB1	88	53.689	ENSLACG00000000105	USB1	72	60.287	Latimeria_chalumnae
ENSPTIG00000007506	USB1	94	52.988	ENSLOCG00000000465	usb1	88	53.036	Lepisosteus_oculatus
ENSPTIG00000007506	USB1	100	65.556	ENSLAFG00000002267	USB1	100	65.926	Loxodonta_africana
ENSPTIG00000007506	USB1	100	86.517	ENSMFAG00000003926	USB1	100	86.517	Macaca_fascicularis
ENSPTIG00000007506	USB1	100	86.517	ENSMMUG00000022669	USB1	100	86.517	Macaca_mulatta
ENSPTIG00000007506	USB1	100	86.142	ENSMNEG00000042487	USB1	100	86.142	Macaca_nemestrina
ENSPTIG00000007506	USB1	100	86.517	ENSMLEG00000028756	USB1	100	86.517	Mandrillus_leucophaeus
ENSPTIG00000007506	USB1	98	47.292	ENSMAMG00000015092	usb1	87	49.180	Mastacembelus_armatus
ENSPTIG00000007506	USB1	88	50.427	ENSMZEG00005010008	usb1	83	50.427	Maylandia_zebra
ENSPTIG00000007506	USB1	100	82.397	ENSMAUG00000007832	Usb1	100	82.397	Mesocricetus_auratus
ENSPTIG00000007506	USB1	100	86.142	ENSMICG00000004900	USB1	100	86.142	Microcebus_murinus
ENSPTIG00000007506	USB1	100	82.772	ENSMOCG00000022647	Usb1	100	82.772	Microtus_ochrogaster
ENSPTIG00000007506	USB1	85	51.316	ENSMMOG00000000490	usb1	88	51.316	Mola_mola
ENSPTIG00000007506	USB1	100	65.201	ENSMODG00000014067	USB1	100	64.925	Monodelphis_domestica
ENSPTIG00000007506	USB1	96	48.235	ENSMALG00000005930	usb1	86	49.590	Monopterus_albus
ENSPTIG00000007506	USB1	100	80.524	MGP_CAROLIEiJ_G0031421	Usb1	100	83.186	Mus_caroli
ENSPTIG00000007506	USB1	100	81.273	ENSMUSG00000031792	Usb1	100	84.956	Mus_musculus
ENSPTIG00000007506	USB1	100	81.273	MGP_PahariEiJ_G0023019	Usb1	100	84.615	Mus_pahari
ENSPTIG00000007506	USB1	100	80.524	MGP_SPRETEiJ_G0032540	Usb1	100	80.524	Mus_spretus
ENSPTIG00000007506	USB1	100	87.361	ENSMPUG00000004684	USB1	96	87.361	Mustela_putorius_furo
ENSPTIG00000007506	USB1	87	91.342	ENSMLUG00000007400	USB1	100	91.342	Myotis_lucifugus
ENSPTIG00000007506	USB1	100	85.130	ENSNGAG00000009703	Usb1	100	85.130	Nannospalax_galili
ENSPTIG00000007506	USB1	86	50.698	ENSNBRG00000008747	usb1	99	51.485	Neolamprologus_brichardi
ENSPTIG00000007506	USB1	100	83.750	ENSNLEG00000003340	USB1	100	85.317	Nomascus_leucogenys
ENSPTIG00000007506	USB1	94	59.477	ENSMEUG00000003328	-	100	59.477	Notamacropus_eugenii
ENSPTIG00000007506	USB1	63	87.879	ENSOPRG00000011803	USB1	72	87.879	Ochotona_princeps
ENSPTIG00000007506	USB1	100	79.775	ENSODEG00000016214	USB1	100	79.775	Octodon_degus
ENSPTIG00000007506	USB1	98	47.331	ENSONIG00000011063	usb1	84	50.855	Oreochromis_niloticus
ENSPTIG00000007506	USB1	87	71.368	ENSOANG00000012118	USB1	97	71.368	Ornithorhynchus_anatinus
ENSPTIG00000007506	USB1	89	46.694	ENSORLG00000012479	usb1	89	46.694	Oryzias_latipes
ENSPTIG00000007506	USB1	89	46.694	ENSORLG00020018671	usb1	89	46.694	Oryzias_latipes_hni
ENSPTIG00000007506	USB1	84	48.661	ENSORLG00015009679	usb1	99	43.123	Oryzias_latipes_hsok
ENSPTIG00000007506	USB1	84	49.554	ENSOMEG00000012930	usb1	99	45.818	Oryzias_melastigma
ENSPTIG00000007506	USB1	100	85.141	ENSOGAG00000003273	USB1	100	85.141	Otolemur_garnettii
ENSPTIG00000007506	USB1	93	84.615	ENSOARG00000001107	USB1	95	84.615	Ovis_aries
ENSPTIG00000007506	USB1	100	85.019	ENSPPAG00000042137	USB1	100	85.019	Pan_paniscus
ENSPTIG00000007506	USB1	100	99.375	ENSPPRG00000024797	USB1	100	99.375	Panthera_pardus
ENSPTIG00000007506	USB1	100	84.337	ENSPTRG00000008172	USB1	100	89.252	Pan_troglodytes
ENSPTIG00000007506	USB1	100	86.517	ENSPANG00000025138	USB1	100	86.517	Papio_anubis
ENSPTIG00000007506	USB1	98	46.441	ENSPKIG00000015109	usb1	99	47.119	Paramormyrops_kingsleyae
ENSPTIG00000007506	USB1	84	51.082	ENSPSIG00000004305	USB1	100	51.570	Pelodiscus_sinensis
ENSPTIG00000007506	USB1	84	49.778	ENSPMGG00000017725	usb1	86	49.778	Periophthalmus_magnuspinnatus
ENSPTIG00000007506	USB1	100	82.353	ENSPEMG00000016183	Usb1	100	83.088	Peromyscus_maniculatus_bairdii
ENSPTIG00000007506	USB1	84	51.770	ENSPMAG00000000462	usb1	95	51.770	Petromyzon_marinus
ENSPTIG00000007506	USB1	98	46.595	ENSPFOG00000011130	usb1	84	49.573	Poecilia_formosa
ENSPTIG00000007506	USB1	98	45.878	ENSPLAG00000009820	usb1	84	48.718	Poecilia_latipinna
ENSPTIG00000007506	USB1	98	46.953	ENSPMEG00000006402	usb1	84	49.573	Poecilia_mexicana
ENSPTIG00000007506	USB1	97	42.581	ENSPREG00000001047	usb1	81	50.495	Poecilia_reticulata
ENSPTIG00000007506	USB1	95	81.890	ENSPPYG00000007401	USB1	100	81.890	Pongo_abelii
ENSPTIG00000007506	USB1	100	88.015	ENSPCOG00000022612	USB1	100	88.015	Propithecus_coquereli
ENSPTIG00000007506	USB1	100	83.521	ENSPVAG00000004613	USB1	100	83.521	Pteropus_vampyrus
ENSPTIG00000007506	USB1	88	51.282	ENSPNYG00000022262	usb1	83	51.282	Pundamilia_nyererei
ENSPTIG00000007506	USB1	84	50.446	ENSPNAG00000011736	usb1	76	50.446	Pygocentrus_nattereri
ENSPTIG00000007506	USB1	100	82.022	ENSRNOG00000013216	Usb1	100	82.022	Rattus_norvegicus
ENSPTIG00000007506	USB1	100	86.345	ENSRBIG00000044466	USB1	100	90.654	Rhinopithecus_bieti
ENSPTIG00000007506	USB1	100	86.517	ENSRROG00000029211	USB1	100	86.517	Rhinopithecus_roxellana
ENSPTIG00000007506	USB1	100	84.644	ENSSBOG00000029362	USB1	100	84.644	Saimiri_boliviensis_boliviensis
ENSPTIG00000007506	USB1	82	71.689	ENSSHAG00000006993	USB1	99	67.600	Sarcophilus_harrisii
ENSPTIG00000007506	USB1	85	55.947	ENSSFOG00015023663	usb1	71	55.947	Scleropages_formosus
ENSPTIG00000007506	USB1	99	42.652	ENSSMAG00000015834	usb1	89	47.148	Scophthalmus_maximus
ENSPTIG00000007506	USB1	85	53.097	ENSSDUG00000002949	usb1	99	48.905	Seriola_dumerili
ENSPTIG00000007506	USB1	98	48.289	ENSSLDG00000014174	usb1	83	51.282	Seriola_lalandi_dorsalis
ENSPTIG00000007506	USB1	80	65.421	ENSSPUG00000006741	USB1	100	65.421	Sphenodon_punctatus
ENSPTIG00000007506	USB1	98	45.775	ENSSPAG00000007484	usb1	82	49.785	Stegastes_partitus
ENSPTIG00000007506	USB1	100	84.387	ENSSSCG00000002807	USB1	100	84.387	Sus_scrofa
ENSPTIG00000007506	USB1	78	67.943	ENSTGUG00000004792	USB1	82	67.943	Taeniopygia_guttata
ENSPTIG00000007506	USB1	98	47.015	ENSTRUG00000021069	usb1	87	47.863	Takifugu_rubripes
ENSPTIG00000007506	USB1	98	46.768	ENSTNIG00000000626	usb1	98	46.388	Tetraodon_nigroviridis
ENSPTIG00000007506	USB1	87	59.914	ENSTBEG00000001507	USB1	100	59.914	Tupaia_belangeri
ENSPTIG00000007506	USB1	100	88.104	ENSUAMG00000016823	USB1	100	88.476	Ursus_americanus
ENSPTIG00000007506	USB1	80	88.785	ENSUMAG00000021369	USB1	100	88.785	Ursus_maritimus
ENSPTIG00000007506	USB1	94	50.993	ENSVPAG00000009834	-	59	88.333	Vicugna_pacos
ENSPTIG00000007506	USB1	99	86.940	ENSVVUG00000023700	USB1	95	87.755	Vulpes_vulpes
ENSPTIG00000007506	USB1	81	55.046	ENSXETG00000013795	usb1	89	55.157	Xenopus_tropicalis
ENSPTIG00000007506	USB1	97	46.718	ENSXMAG00000024687	usb1	67	50.000	Xiphophorus_maculatus