EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTIG00000008925 (Gene tree)
Gene ID: 102951628
Gene Symbol: SMG6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Minus strand
Length: 227787 bases
Position: chrKE721670.1:7071661-7299447
Accession: 102951628
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000007257	EST1	PF10374.9	3.1e-15	1	1
ENSPTIP00000007257	EST1_DNA_bind	PF10373.9	6.6e-61	1	1
ENSPTIP00000007234	EST1_DNA_bind	PF10373.9	7.3e-18	1	1
ENSPTIP00000007234	PIN_4	PF13638.6	1.3e-21	1	1
ENSPTIP00000007257	PIN_4	PF13638.6	1.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000011099	SMG6-202	4242	XM_007076123	ENSPTIP00000007257	1413 (aa)	XP_007076185	-
ENSPTIT00000011074	SMG6-201	3704	XM_007076125	ENSPTIP00000007234	511 (aa)	XP_007076187	UPI0003F1BA6C

Gene Model

Click here to download ENSPTIG00000008925's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptg03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000008925's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000008925	SMG6	100	98.043	ENSG00000070366	SMG6	100	99.187	Homo_sapiens
ENSPTIG00000008925	SMG6	100	58.318	ENSAPOG00000019448	smg6	74	55.469	Acanthochromis_polyacanthus
ENSPTIG00000008925	SMG6	100	99.217	ENSAMEG00000007632	SMG6	98	97.469	Ailuropoda_melanoleuca
ENSPTIG00000008925	SMG6	100	60.526	ENSACIG00000012997	smg6	97	49.443	Amphilophus_citrinellus
ENSPTIG00000008925	SMG6	100	57.952	ENSAOCG00000002630	smg6	74	54.891	Amphiprion_ocellaris
ENSPTIG00000008925	SMG6	100	57.952	ENSAPEG00000019101	smg6	74	55.047	Amphiprion_percula
ENSPTIG00000008925	SMG6	100	58.867	ENSATEG00000006483	smg6	73	55.418	Anabas_testudineus
ENSPTIG00000008925	SMG6	85	57.362	ENSACAG00000011783	SMG6	97	58.428	Anolis_carolinensis
ENSPTIG00000008925	SMG6	100	97.847	ENSANAG00000035760	SMG6	98	94.007	Aotus_nancymaae
ENSPTIG00000008925	SMG6	100	58.824	ENSACLG00000005288	smg6	80	55.199	Astatotilapia_calliptera
ENSPTIG00000008925	SMG6	100	62.595	ENSAMXG00000017326	smg6	98	51.654	Astyanax_mexicanus
ENSPTIG00000008925	SMG6	100	98.043	ENSBTAG00000000267	SMG6	98	95.445	Bos_taurus
ENSPTIG00000008925	SMG6	100	97.847	ENSCJAG00000001820	SMG6	98	93.791	Callithrix_jacchus
ENSPTIG00000008925	SMG6	100	99.022	ENSCAFG00000019260	SMG6	98	97.252	Canis_familiaris
ENSPTIG00000008925	SMG6	100	99.022	ENSCAFG00020009770	SMG6	98	97.252	Canis_lupus_dingo
ENSPTIG00000008925	SMG6	100	98.043	ENSCHIG00000021998	SMG6	98	94.939	Capra_hircus
ENSPTIG00000008925	SMG6	100	97.847	ENSTSYG00000003406	SMG6	100	97.847	Carlito_syrichta
ENSPTIG00000008925	SMG6	98	78.010	ENSCAPG00000016197	SMG6	99	82.904	Cavia_aperea
ENSPTIG00000008925	SMG6	100	97.456	ENSCPOG00000014878	SMG6	97	93.421	Cavia_porcellus
ENSPTIG00000008925	SMG6	100	97.847	ENSCCAG00000035801	SMG6	98	94.152	Cebus_capucinus
ENSPTIG00000008925	SMG6	100	96.673	ENSCATG00000031956	SMG6	98	93.935	Cercocebus_atys
ENSPTIG00000008925	SMG6	100	97.847	ENSCLAG00000006748	SMG6	99	93.574	Chinchilla_lanigera
ENSPTIG00000008925	SMG6	100	97.456	ENSCSAG00000013800	SMG6	98	94.585	Chlorocebus_sabaeus
ENSPTIG00000008925	SMG6	51	95.522	ENSCHOG00000005024	-	66	95.522	Choloepus_hoffmanni
ENSPTIG00000008925	SMG6	100	82.779	ENSCPBG00000020369	SMG6	97	73.504	Chrysemys_picta_bellii
ENSPTIG00000008925	SMG6	99	34.563	ENSCING00000010099	-	99	35.192	Ciona_intestinalis
ENSPTIG00000008925	SMG6	54	37.456	ENSCSAVG00000007638	-	99	37.589	Ciona_savignyi
ENSPTIG00000008925	SMG6	100	97.260	ENSCANG00000031764	SMG6	100	97.260	Colobus_angolensis_palliatus
ENSPTIG00000008925	SMG6	53	88.904	ENSCGRG00001019595	Smg6	96	88.904	Cricetulus_griseus_chok1gshd
ENSPTIG00000008925	SMG6	98	85.848	ENSCGRG00000007782	Smg6	99	85.993	Cricetulus_griseus_crigri
ENSPTIG00000008925	SMG6	100	61.205	ENSCSEG00000012757	smg6	80	53.647	Cynoglossus_semilaevis
ENSPTIG00000008925	SMG6	100	58.076	ENSCVAG00000012789	smg6	74	53.901	Cyprinodon_variegatus
ENSPTIG00000008925	SMG6	100	61.654	ENSDARG00000100481	smg6	77	56.230	Danio_rerio
ENSPTIG00000008925	SMG6	100	98.239	ENSDNOG00000048283	SMG6	98	94.368	Dasypus_novemcinctus
ENSPTIG00000008925	SMG6	100	99.217	ENSDORG00000016614	Smg6	94	98.198	Dipodomys_ordii
ENSPTIG00000008925	SMG6	91	100.000	ENSETEG00000016790	SMG6	91	100.000	Echinops_telfairi
ENSPTIG00000008925	SMG6	99	55.121	ENSEBUG00000005059	smg6	66	49.758	Eptatretus_burgeri
ENSPTIG00000008925	SMG6	99	99.214	ENSEASG00005009318	SMG6	97	97.031	Equus_asinus_asinus
ENSPTIG00000008925	SMG6	99	99.018	ENSECAG00000006519	SMG6	97	96.741	Equus_caballus
ENSPTIG00000008925	SMG6	99	86.667	ENSEEUG00000003493	SMG6	98	84.382	Erinaceus_europaeus
ENSPTIG00000008925	SMG6	100	62.030	ENSELUG00000005934	smg6	69	55.957	Esox_lucius
ENSPTIG00000008925	SMG6	100	100.000	ENSFCAG00000028817	SMG6	98	99.783	Felis_catus
ENSPTIG00000008925	SMG6	100	84.149	ENSFALG00000006538	SMG6	99	73.025	Ficedula_albicollis
ENSPTIG00000008925	SMG6	100	97.456	ENSFDAG00000015106	SMG6	98	93.069	Fukomys_damarensis
ENSPTIG00000008925	SMG6	100	56.673	ENSFHEG00000013282	smg6	75	53.438	Fundulus_heteroclitus
ENSPTIG00000008925	SMG6	100	52.662	ENSGMOG00000019077	smg6	68	69.159	Gadus_morhua
ENSPTIG00000008925	SMG6	100	84.180	ENSGALG00000003108	SMG6	96	72.695	Gallus_gallus
ENSPTIG00000008925	SMG6	100	57.636	ENSGAFG00000000379	smg6	74	53.967	Gambusia_affinis
ENSPTIG00000008925	SMG6	100	59.848	ENSGACG00000020521	smg6	99	54.256	Gasterosteus_aculeatus
ENSPTIG00000008925	SMG6	100	83.366	ENSGAGG00000025617	SMG6	99	73.077	Gopherus_agassizii
ENSPTIG00000008925	SMG6	100	97.847	ENSGGOG00000017156	SMG6	98	94.946	Gorilla_gorilla
ENSPTIG00000008925	SMG6	100	58.824	ENSHBUG00000021311	smg6	74	55.643	Haplochromis_burtoni
ENSPTIG00000008925	SMG6	100	97.847	ENSHGLG00000012882	SMG6	98	92.934	Heterocephalus_glaber_female
ENSPTIG00000008925	SMG6	100	97.847	ENSHGLG00100017815	SMG6	98	93.006	Heterocephalus_glaber_male
ENSPTIG00000008925	SMG6	100	59.699	ENSHCOG00000008761	smg6	97	53.815	Hippocampus_comes
ENSPTIG00000008925	SMG6	100	61.290	ENSIPUG00000012493	smg6	75	54.988	Ictalurus_punctatus
ENSPTIG00000008925	SMG6	100	99.022	ENSSTOG00000028127	SMG6	98	94.801	Ictidomys_tridecemlineatus
ENSPTIG00000008925	SMG6	77	90.055	ENSJJAG00000015367	Smg6	92	88.025	Jaculus_jaculus
ENSPTIG00000008925	SMG6	100	59.307	ENSKMAG00000000279	smg6	78	53.747	Kryptolebias_marmoratus
ENSPTIG00000008925	SMG6	100	56.752	ENSLBEG00000002184	smg6	76	53.507	Labrus_bergylta
ENSPTIG00000008925	SMG6	55	58.655	ENSLACG00000000806	-	98	59.776	Latimeria_chalumnae
ENSPTIG00000008925	SMG6	91	80.430	ENSLACG00000003276	SMG6	100	80.430	Latimeria_chalumnae
ENSPTIG00000008925	SMG6	100	68.401	ENSLOCG00000006448	smg6	99	55.325	Lepisosteus_oculatus
ENSPTIG00000008925	SMG6	100	97.847	ENSLAFG00000001261	SMG6	98	94.079	Loxodonta_africana
ENSPTIG00000008925	SMG6	100	97.260	ENSMFAG00000003394	SMG6	98	94.513	Macaca_fascicularis
ENSPTIG00000008925	SMG6	100	97.260	ENSMMUG00000023161	SMG6	98	94.440	Macaca_mulatta
ENSPTIG00000008925	SMG6	100	97.260	ENSMNEG00000044592	SMG6	98	89.345	Macaca_nemestrina
ENSPTIG00000008925	SMG6	100	97.260	ENSMLEG00000029353	SMG6	99	97.368	Mandrillus_leucophaeus
ENSPTIG00000008925	SMG6	100	59.347	ENSMAMG00000020119	smg6	80	55.709	Mastacembelus_armatus
ENSPTIG00000008925	SMG6	100	58.824	ENSMZEG00005024736	smg6	74	55.302	Maylandia_zebra
ENSPTIG00000008925	SMG6	72	85.286	ENSMGAG00000017200	-	100	85.286	Meleagris_gallopavo
ENSPTIG00000008925	SMG6	72	68.177	ENSMGAG00000005401	-	97	68.177	Meleagris_gallopavo
ENSPTIG00000008925	SMG6	100	98.826	ENSMICG00000012913	SMG6	98	96.101	Microcebus_murinus
ENSPTIG00000008925	SMG6	100	60.837	ENSMMOG00000010883	smg6	77	56.455	Mola_mola
ENSPTIG00000008925	SMG6	99	41.454	ENSMODG00000024410	-	99	41.257	Monodelphis_domestica
ENSPTIG00000008925	SMG6	100	96.477	ENSMODG00000010622	SMG6	98	86.816	Monodelphis_domestica
ENSPTIG00000008925	SMG6	99	41.650	ENSMODG00000024463	-	99	41.650	Monodelphis_domestica
ENSPTIG00000008925	SMG6	99	41.454	ENSMODG00000024460	-	99	41.454	Monodelphis_domestica
ENSPTIG00000008925	SMG6	87	50.633	ENSMODG00000024395	-	99	40.705	Monodelphis_domestica
ENSPTIG00000008925	SMG6	100	57.847	ENSMALG00000001106	smg6	73	55.729	Monopterus_albus
ENSPTIG00000008925	SMG6	100	98.043	MGP_CAROLIEiJ_G0016729	Smg6	98	92.130	Mus_caroli
ENSPTIG00000008925	SMG6	100	98.043	ENSMUSG00000038290	Smg6	98	91.841	Mus_musculus
ENSPTIG00000008925	SMG6	100	97.847	MGP_PahariEiJ_G0017866	Smg6	98	91.835	Mus_pahari
ENSPTIG00000008925	SMG6	100	98.043	MGP_SPRETEiJ_G0017572	Smg6	95	94.985	Mus_spretus
ENSPTIG00000008925	SMG6	100	99.217	ENSMPUG00000013046	SMG6	98	97.686	Mustela_putorius_furo
ENSPTIG00000008925	SMG6	100	98.826	ENSMLUG00000005739	SMG6	98	95.876	Myotis_lucifugus
ENSPTIG00000008925	SMG6	100	96.869	ENSNGAG00000007287	Smg6	99	91.908	Nannospalax_galili
ENSPTIG00000008925	SMG6	100	58.659	ENSNBRG00000009511	smg6	81	54.753	Neolamprologus_brichardi
ENSPTIG00000008925	SMG6	100	97.847	ENSNLEG00000017171	SMG6	100	97.847	Nomascus_leucogenys
ENSPTIG00000008925	SMG6	100	95.303	ENSMEUG00000015804	SMG6	99	83.141	Notamacropus_eugenii
ENSPTIG00000008925	SMG6	92	83.761	ENSOPRG00000000579	SMG6	85	98.421	Ochotona_princeps
ENSPTIG00000008925	SMG6	100	97.070	ENSODEG00000008038	SMG6	97	86.446	Octodon_degus
ENSPTIG00000008925	SMG6	100	59.007	ENSONIG00000005594	smg6	90	54.707	Oreochromis_niloticus
ENSPTIG00000008925	SMG6	59	86.333	ENSOANG00000030166	-	90	86.333	Ornithorhynchus_anatinus
ENSPTIG00000008925	SMG6	100	97.852	ENSOCUG00000013018	SMG6	98	94.016	Oryctolagus_cuniculus
ENSPTIG00000008925	SMG6	100	57.091	ENSORLG00000003317	smg6	74	55.031	Oryzias_latipes
ENSPTIG00000008925	SMG6	100	57.221	ENSORLG00020015343	smg6	74	54.724	Oryzias_latipes_hni
ENSPTIG00000008925	SMG6	100	56.727	ENSORLG00015020454	smg6	74	54.988	Oryzias_latipes_hsok
ENSPTIG00000008925	SMG6	100	56.679	ENSOMEG00000010838	smg6	75	54.301	Oryzias_melastigma
ENSPTIG00000008925	SMG6	100	98.434	ENSOGAG00000004483	SMG6	98	94.733	Otolemur_garnettii
ENSPTIG00000008925	SMG6	100	98.239	ENSOARG00000015076	SMG6	100	94.863	Ovis_aries
ENSPTIG00000008925	SMG6	100	98.043	ENSPPAG00000043296	SMG6	98	94.946	Pan_paniscus
ENSPTIG00000008925	SMG6	100	100.000	ENSPPRG00000014581	SMG6	98	100.000	Panthera_pardus
ENSPTIG00000008925	SMG6	100	98.043	ENSPTRG00000008544	SMG6	100	98.043	Pan_troglodytes
ENSPTIG00000008925	SMG6	100	97.260	ENSPANG00000024588	SMG6	98	94.296	Papio_anubis
ENSPTIG00000008925	SMG6	88	71.305	ENSPSIG00000006660	SMG6	96	71.384	Pelodiscus_sinensis
ENSPTIG00000008925	SMG6	100	59.439	ENSPMGG00000000844	smg6	98	60.870	Periophthalmus_magnuspinnatus
ENSPTIG00000008925	SMG6	100	98.239	ENSPEMG00000020707	Smg6	97	94.690	Peromyscus_maniculatus_bairdii
ENSPTIG00000008925	SMG6	100	60.075	ENSPFOG00000012035	smg6	97	51.615	Poecilia_formosa
ENSPTIG00000008925	SMG6	100	57.482	ENSPLAG00000017660	smg6	74	53.876	Poecilia_latipinna
ENSPTIG00000008925	SMG6	100	58.000	ENSPMEG00000000258	smg6	74	54.232	Poecilia_mexicana
ENSPTIG00000008925	SMG6	100	57.482	ENSPREG00000010066	smg6	74	54.046	Poecilia_reticulata
ENSPTIG00000008925	SMG6	98	89.481	ENSPPYG00000007790	SMG6	98	89.481	Pongo_abelii
ENSPTIG00000008925	SMG6	99	89.804	ENSPCAG00000000552	SMG6	98	89.386	Procavia_capensis
ENSPTIG00000008925	SMG6	100	98.434	ENSPCOG00000020925	SMG6	98	95.596	Propithecus_coquereli
ENSPTIG00000008925	SMG6	100	98.630	ENSPVAG00000002159	SMG6	84	92.334	Pteropus_vampyrus
ENSPTIG00000008925	SMG6	100	61.450	ENSPNYG00000024151	smg6	79	57.259	Pundamilia_nyererei
ENSPTIG00000008925	SMG6	100	62.709	ENSPNAG00000015480	smg6	87	63.375	Pygocentrus_nattereri
ENSPTIG00000008925	SMG6	100	97.847	ENSRNOG00000003041	Smg6	95	95.575	Rattus_norvegicus
ENSPTIG00000008925	SMG6	100	96.869	ENSRBIG00000024746	SMG6	98	94.296	Rhinopithecus_bieti
ENSPTIG00000008925	SMG6	100	96.869	ENSRROG00000030423	SMG6	100	96.869	Rhinopithecus_roxellana
ENSPTIG00000008925	SMG6	100	97.847	ENSSBOG00000022518	SMG6	98	92.130	Saimiri_boliviensis_boliviensis
ENSPTIG00000008925	SMG6	100	95.499	ENSSHAG00000010045	SMG6	98	86.744	Sarcophilus_harrisii
ENSPTIG00000008925	SMG6	97	40.519	ENSSHAG00000000380	-	99	40.519	Sarcophilus_harrisii
ENSPTIG00000008925	SMG6	100	64.486	ENSSFOG00015005436	smg6	70	57.619	Scleropages_formosus
ENSPTIG00000008925	SMG6	100	57.350	ENSSMAG00000019777	smg6	73	55.113	Scophthalmus_maximus
ENSPTIG00000008925	SMG6	100	58.288	ENSSDUG00000016412	smg6	79	53.314	Seriola_dumerili
ENSPTIG00000008925	SMG6	91	56.262	ENSSLDG00000020747	smg6	83	52.445	Seriola_lalandi_dorsalis
ENSPTIG00000008925	SMG6	100	81.712	ENSSPUG00000007152	SMG6	98	70.765	Sphenodon_punctatus
ENSPTIG00000008925	SMG6	100	58.242	ENSSPAG00000015633	smg6	74	54.602	Stegastes_partitus
ENSPTIG00000008925	SMG6	100	98.434	ENSSSCG00000017826	SMG6	99	95.583	Sus_scrofa
ENSPTIG00000008925	SMG6	100	84.932	ENSTGUG00000005836	SMG6	98	73.329	Taeniopygia_guttata
ENSPTIG00000008925	SMG6	100	58.835	ENSTRUG00000000358	smg6	81	55.288	Takifugu_rubripes
ENSPTIG00000008925	SMG6	100	60.223	ENSTNIG00000016164	smg6	97	50.778	Tetraodon_nigroviridis
ENSPTIG00000008925	SMG6	100	89.432	ENSTBEG00000011424	SMG6	98	89.603	Tupaia_belangeri
ENSPTIG00000008925	SMG6	100	90.998	ENSTTRG00000001175	SMG6	89	92.879	Tursiops_truncatus
ENSPTIG00000008925	SMG6	100	98.833	ENSUAMG00000025152	SMG6	100	97.617	Ursus_americanus
ENSPTIG00000008925	SMG6	100	99.413	ENSUMAG00000009306	SMG6	100	97.902	Ursus_maritimus
ENSPTIG00000008925	SMG6	83	100.000	ENSVPAG00000000225	SMG6	85	100.000	Vicugna_pacos
ENSPTIG00000008925	SMG6	100	99.022	ENSVVUG00000021727	SMG6	98	96.963	Vulpes_vulpes
ENSPTIG00000008925	SMG6	100	68.919	ENSXETG00000023799	SMG6	99	59.859	Xenopus_tropicalis
ENSPTIG00000008925	SMG6	100	57.664	ENSXMAG00000010321	smg6	74	54.281	Xiphophorus_maculatus