EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTIG00000010106 (Gene tree)
Gene ID: 102967816
Gene Symbol: PABPC4L
Alias: -
Full Name: poly(A) binding protein cytoplasmic 4 like
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Plus strand
Length: 1113 bases
Position: chrKE721976.1:12720398-12721510
Accession: 102967816
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000008858	RRM_5	PF13893.6	2.3e-15	1	3
ENSPTIP00000008858	RRM_5	PF13893.6	2.3e-15	2	3
ENSPTIP00000008858	RRM_5	PF13893.6	2.3e-15	3	3
ENSPTIP00000008858	RRM_1	PF00076.22	1.6e-85	1	4
ENSPTIP00000008858	RRM_1	PF00076.22	1.6e-85	2	4
ENSPTIP00000008858	RRM_1	PF00076.22	1.6e-85	3	4
ENSPTIP00000008858	RRM_1	PF00076.22	1.6e-85	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000012756	PABPC4L-201	1113	XM_007091803	ENSPTIP00000008858	370 (aa)	XP_007091865	UPI0003F19E80

Gene Model

Click here to download ENSPTIG00000010106's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptg03013	RNA transport	KEGG
ptg03015	mRNA surveillance pathway	KEGG
ptg03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000010106's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTIG00000010106	PABPC4L	97	71.242	ENSPTIG00000021083	PABPC1	64	71.242
ENSPTIG00000010106	PABPC4L	99	40.526	ENSPTIG00000014530	SF3B4	56	40.526
ENSPTIG00000010106	PABPC4L	56	36.232	ENSPTIG00000003974	CELF1	62	36.232
ENSPTIG00000010106	PABPC4L	94	30.588	ENSPTIG00000017925	RBMS2	52	30.588
ENSPTIG00000010106	PABPC4L	99	74.865	ENSPTIG00000005829	PABPC4	63	74.865
ENSPTIG00000010106	PABPC4L	64	31.373	ENSPTIG00000019051	-	51	30.719
ENSPTIG00000010106	PABPC4L	98	63.764	ENSPTIG00000001480	PABPC5	96	63.736
ENSPTIG00000010106	PABPC4L	62	42.308	ENSPTIG00000017702	RBM3	72	42.308
ENSPTIG00000010106	PABPC4L	61	40.000	ENSPTIG00000012111	CIRBP	51	40.000
ENSPTIG00000010106	PABPC4L	98	30.519	ENSPTIG00000005627	ELAVL2	96	30.519
ENSPTIG00000010106	PABPC4L	86	33.871	ENSPTIG00000013602	ELAVL1	88	33.871
ENSPTIG00000010106	PABPC4L	98	65.289	ENSPTIG00000006524	PABPC1L	63	65.289

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000010106	PABPC4L	99	90.244	ENSG00000254535	PABPC4L	99	90.244	Homo_sapiens
ENSPTIG00000010106	PABPC4L	99	87.805	ENSANAG00000017199	PABPC4L	86	87.805	Aotus_nancymaae
ENSPTIG00000010106	PABPC4L	100	93.514	ENSBTAG00000046902	PABPC4L	100	93.514	Bos_taurus
ENSPTIG00000010106	PABPC4L	99	88.076	ENSCJAG00000045332	PABPC4L	86	88.076	Callithrix_jacchus
ENSPTIG00000010106	PABPC4L	99	76.902	ENSCAFG00020019182	-	55	76.902	Canis_lupus_dingo
ENSPTIG00000010106	PABPC4L	100	93.243	ENSCHIG00000007231	PABPC4L	100	93.243	Capra_hircus
ENSPTIG00000010106	PABPC4L	97	80.240	ENSCAPG00000000555	PABPC4L	100	80.240	Cavia_aperea
ENSPTIG00000010106	PABPC4L	99	77.236	ENSCPOG00000033167	PABPC4L	100	77.236	Cavia_porcellus
ENSPTIG00000010106	PABPC4L	99	88.076	ENSCCAG00000031681	PABPC4L	86	88.076	Cebus_capucinus
ENSPTIG00000010106	PABPC4L	99	81.572	ENSCLAG00000017628	PABPC4L	99	81.572	Chinchilla_lanigera
ENSPTIG00000010106	PABPC4L	99	87.534	ENSCANG00000037677	PABPC4L	99	87.534	Colobus_angolensis_palliatus
ENSPTIG00000010106	PABPC4L	99	80.488	ENSCGRG00001002070	Pabpc4l	99	80.488	Cricetulus_griseus_chok1gshd
ENSPTIG00000010106	PABPC4L	99	80.488	ENSCGRG00000020086	Pabpc4l	99	80.488	Cricetulus_griseus_crigri
ENSPTIG00000010106	PABPC4L	99	90.244	ENSDNOG00000031077	PABPC4L	95	90.244	Dasypus_novemcinctus
ENSPTIG00000010106	PABPC4L	100	92.703	ENSEASG00005007883	PABPC4L	100	92.703	Equus_asinus_asinus
ENSPTIG00000010106	PABPC4L	100	93.243	ENSECAG00000031416	PABPC4L	100	93.243	Equus_caballus
ENSPTIG00000010106	PABPC4L	100	100.000	ENSFCAG00000028270	PABPC4L	100	100.000	Felis_catus
ENSPTIG00000010106	PABPC4L	100	81.351	ENSFDAG00000019606	PABPC4L	100	81.351	Fukomys_damarensis
ENSPTIG00000010106	PABPC4L	99	89.702	ENSGGOG00000024991	PABPC4L	99	89.702	Gorilla_gorilla
ENSPTIG00000010106	PABPC4L	100	81.622	ENSHGLG00000020104	PABPC4L	100	81.622	Heterocephalus_glaber_female
ENSPTIG00000010106	PABPC4L	100	81.622	ENSHGLG00100020648	PABPC4L	100	81.622	Heterocephalus_glaber_male
ENSPTIG00000010106	PABPC4L	99	84.865	ENSSTOG00000019472	PABPC4L	99	84.865	Ictidomys_tridecemlineatus
ENSPTIG00000010106	PABPC4L	100	81.081	ENSJJAG00000004090	Pabpc4l	100	81.081	Jaculus_jaculus
ENSPTIG00000010106	PABPC4L	99	79.946	ENSMAUG00000016313	Pabpc4l	99	79.946	Mesocricetus_auratus
ENSPTIG00000010106	PABPC4L	99	90.515	ENSMICG00000029683	PABPC4L	99	90.515	Microcebus_murinus
ENSPTIG00000010106	PABPC4L	99	81.843	ENSMOCG00000007551	Pabpc4l	99	81.843	Microtus_ochrogaster
ENSPTIG00000010106	PABPC4L	99	78.862	MGP_CAROLIEiJ_G0024968	Pabpc4l	100	80.000	Mus_caroli
ENSPTIG00000010106	PABPC4L	99	78.591	ENSMUSG00000090919	Pabpc4l	100	80.000	Mus_musculus
ENSPTIG00000010106	PABPC4L	99	78.862	MGP_PahariEiJ_G0026409	Pabpc4l	100	78.000	Mus_pahari
ENSPTIG00000010106	PABPC4L	99	78.049	MGP_SPRETEiJ_G0025903	Pabpc4l	100	80.000	Mus_spretus
ENSPTIG00000010106	PABPC4L	99	81.572	ENSMLUG00000008254	PABPC4L	99	81.572	Myotis_lucifugus
ENSPTIG00000010106	PABPC4L	99	84.553	ENSNGAG00000001502	Pabpc4l	99	84.553	Nannospalax_galili
ENSPTIG00000010106	PABPC4L	99	89.973	ENSNLEG00000019300	PABPC4L	99	89.973	Nomascus_leucogenys
ENSPTIG00000010106	PABPC4L	99	83.469	ENSOGAG00000026166	PABPC4L	99	83.469	Otolemur_garnettii
ENSPTIG00000010106	PABPC4L	99	90.712	ENSPPAG00000043745	PABPC4L	93	90.712	Pan_paniscus
ENSPTIG00000010106	PABPC4L	100	99.459	ENSPPRG00000018628	PABPC4L	100	99.459	Panthera_pardus
ENSPTIG00000010106	PABPC4L	99	90.712	ENSPTRG00000045513	-	78	90.712	Pan_troglodytes
ENSPTIG00000010106	PABPC4L	99	80.488	ENSPEMG00000012565	Pabpc4l	99	80.488	Peromyscus_maniculatus_bairdii
ENSPTIG00000010106	PABPC4L	99	89.973	ENSPCOG00000025578	PABPC4L	99	89.973	Propithecus_coquereli
ENSPTIG00000010106	PABPC4L	99	79.404	ENSRNOG00000029749	Pabpc4l	99	79.404	Rattus_norvegicus
ENSPTIG00000010106	PABPC4L	99	86.992	ENSRBIG00000030229	PABPC4L	99	86.992	Rhinopithecus_bieti
ENSPTIG00000010106	PABPC4L	99	86.721	ENSRROG00000020367	PABPC4L	99	86.721	Rhinopithecus_roxellana
ENSPTIG00000010106	PABPC4L	99	86.450	ENSSBOG00000016382	PABPC4L	99	86.450	Saimiri_boliviensis_boliviensis
ENSPTIG00000010106	PABPC4L	100	87.568	ENSSSCG00000009067	PABPC4L	100	87.568	Sus_scrofa
ENSPTIG00000010106	PABPC4L	100	96.757	ENSUAMG00000001289	PABPC4L	100	96.757	Ursus_americanus
ENSPTIG00000010106	PABPC4L	100	96.757	ENSUMAG00000014887	PABPC4L	100	96.757	Ursus_maritimus
ENSPTIG00000010106	PABPC4L	96	78.659	ENSVVUG00000011060	-	89	78.659	Vulpes_vulpes