EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTIG00000010159 (Gene tree)
Gene ID: 102972099
Gene Symbol: UPF1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Plus strand
Length: 20216 bases
Position: chrKE721878.1:3088898-3109113
Accession: 102972099
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000008974	UPF1_Zn_bind	PF09416.10	5.2e-75	1	1
ENSPTIP00000008974	ResIII	PF04851.15	2.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000012878	UPF1-201	3069	XM_015540347	ENSPTIP00000008974	1022 (aa)	XP_015395833	-

Gene Model

Click here to download ENSPTIG00000010159's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptg03013	RNA transport	KEGG
ptg03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000010159's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000010159	UPF1	99	97.596	ENSG00000005007	UPF1	93	97.596	Homo_sapiens
ENSPTIG00000010159	UPF1	99	92.816	ENSAPOG00000010916	-	95	92.912	Acanthochromis_polyacanthus
ENSPTIG00000010159	UPF1	99	91.309	ENSAPOG00000023773	upf1	95	91.500	Acanthochromis_polyacanthus
ENSPTIG00000010159	UPF1	99	96.771	ENSAMEG00000011474	UPF1	94	96.771	Ailuropoda_melanoleuca
ENSPTIG00000010159	UPF1	99	91.031	ENSACIG00000019949	upf1	95	91.500	Amphilophus_citrinellus
ENSPTIG00000010159	UPF1	98	93.073	ENSACIG00000010985	-	100	93.171	Amphilophus_citrinellus
ENSPTIG00000010159	UPF1	99	90.787	ENSAOCG00000018519	upf1	95	91.493	Amphiprion_ocellaris
ENSPTIG00000010159	UPF1	99	92.720	ENSAOCG00000006352	-	100	90.458	Amphiprion_ocellaris
ENSPTIG00000010159	UPF1	99	92.720	ENSAPEG00000006292	-	100	90.458	Amphiprion_percula
ENSPTIG00000010159	UPF1	99	90.787	ENSAPEG00000016344	upf1	95	91.493	Amphiprion_percula
ENSPTIG00000010159	UPF1	99	89.906	ENSATEG00000017867	upf1	95	90.849	Anabas_testudineus
ENSPTIG00000010159	UPF1	99	92.816	ENSATEG00000016606	-	95	92.912	Anabas_testudineus
ENSPTIG00000010159	UPF1	99	96.011	ENSAPLG00000009175	UPF1	99	96.011	Anas_platyrhynchos
ENSPTIG00000010159	UPF1	99	95.243	ENSANAG00000024107	UPF1	95	95.243	Aotus_nancymaae
ENSPTIG00000010159	UPF1	99	90.840	ENSACLG00000007181	upf1	95	91.309	Astatotilapia_calliptera
ENSPTIG00000010159	UPF1	99	92.433	ENSACLG00000022630	-	95	92.433	Astatotilapia_calliptera
ENSPTIG00000010159	UPF1	99	93.014	ENSAMXG00000042187	upf1	95	93.589	Astyanax_mexicanus
ENSPTIG00000010159	UPF1	99	96.771	ENSBTAG00000020922	UPF1	93	96.771	Bos_taurus
ENSPTIG00000010159	UPF1	78	57.178	WBGene00004880	smg-2	76	57.178	Caenorhabditis_elegans
ENSPTIG00000010159	UPF1	99	96.575	ENSCJAG00000019627	UPF1	93	96.575	Callithrix_jacchus
ENSPTIG00000010159	UPF1	99	96.771	ENSCAFG00000014578	UPF1	93	96.771	Canis_familiaris
ENSPTIG00000010159	UPF1	99	97.793	ENSCAFG00020012347	UPF1	93	97.793	Canis_lupus_dingo
ENSPTIG00000010159	UPF1	99	97.793	ENSCHIG00000011018	UPF1	93	97.793	Capra_hircus
ENSPTIG00000010159	UPF1	99	96.384	ENSTSYG00000008877	UPF1	98	96.384	Carlito_syrichta
ENSPTIG00000010159	UPF1	99	95.814	ENSCAPG00000005758	UPF1	95	95.814	Cavia_aperea
ENSPTIG00000010159	UPF1	99	95.802	ENSCPOG00000025463	UPF1	94	95.802	Cavia_porcellus
ENSPTIG00000010159	UPF1	99	97.596	ENSCCAG00000032175	UPF1	93	97.596	Cebus_capucinus
ENSPTIG00000010159	UPF1	99	96.388	ENSCATG00000040306	UPF1	98	96.388	Cercocebus_atys
ENSPTIG00000010159	UPF1	99	96.384	ENSCLAG00000004037	UPF1	99	96.384	Chinchilla_lanigera
ENSPTIG00000010159	UPF1	99	97.596	ENSCSAG00000005276	UPF1	93	97.596	Chlorocebus_sabaeus
ENSPTIG00000010159	UPF1	99	96.555	ENSCPBG00000012513	UPF1	94	96.555	Chrysemys_picta_bellii
ENSPTIG00000010159	UPF1	75	83.681	ENSCING00000021399	-	91	83.681	Ciona_intestinalis
ENSPTIG00000010159	UPF1	99	74.352	ENSCSAVG00000006533	-	94	74.352	Ciona_savignyi
ENSPTIG00000010159	UPF1	99	96.575	ENSCANG00000029819	UPF1	97	96.575	Colobus_angolensis_palliatus
ENSPTIG00000010159	UPF1	99	97.212	ENSCGRG00001021067	Upf1	93	97.212	Cricetulus_griseus_chok1gshd
ENSPTIG00000010159	UPF1	99	96.194	ENSCGRG00000013480	Upf1	98	96.194	Cricetulus_griseus_crigri
ENSPTIG00000010159	UPF1	99	85.824	ENSCSEG00000017239	upf1	95	86.015	Cynoglossus_semilaevis
ENSPTIG00000010159	UPF1	99	92.809	ENSCSEG00000016159	-	95	92.809	Cynoglossus_semilaevis
ENSPTIG00000010159	UPF1	99	92.146	ENSCVAG00000010561	upf1	95	92.146	Cyprinodon_variegatus
ENSPTIG00000010159	UPF1	99	92.823	ENSDARG00000016302	upf1	95	93.397	Danio_rerio
ENSPTIG00000010159	UPF1	99	93.726	ENSDORG00000009984	Upf1	95	93.726	Dipodomys_ordii
ENSPTIG00000010159	UPF1	82	73.364	FBgn0030354	Upf1	79	69.304	Drosophila_melanogaster
ENSPTIG00000010159	UPF1	53	90.203	ENSEBUG00000010069	upf1	89	90.203	Eptatretus_burgeri
ENSPTIG00000010159	UPF1	99	97.697	ENSEASG00005006549	UPF1	93	97.697	Equus_asinus_asinus
ENSPTIG00000010159	UPF1	99	97.697	ENSECAG00000010639	UPF1	93	97.697	Equus_caballus
ENSPTIG00000010159	UPF1	99	91.722	ENSELUG00000012916	-	95	91.730	Esox_lucius
ENSPTIG00000010159	UPF1	99	90.190	ENSELUG00000020917	upf1	95	90.476	Esox_lucius
ENSPTIG00000010159	UPF1	99	96.866	ENSFCAG00000009757	UPF1	93	96.866	Felis_catus
ENSPTIG00000010159	UPF1	99	96.463	ENSFALG00000009312	UPF1	96	96.463	Ficedula_albicollis
ENSPTIG00000010159	UPF1	99	96.289	ENSFDAG00000014816	UPF1	99	96.289	Fukomys_damarensis
ENSPTIG00000010159	UPF1	91	94.500	ENSFHEG00000016276	-	96	94.500	Fundulus_heteroclitus
ENSPTIG00000010159	UPF1	99	88.392	ENSFHEG00000006428	upf1	94	88.392	Fundulus_heteroclitus
ENSPTIG00000010159	UPF1	99	91.090	ENSGMOG00000007541	upf1	95	91.659	Gadus_morhua
ENSPTIG00000010159	UPF1	99	97.025	ENSGALG00000003220	UPF1	93	97.025	Gallus_gallus
ENSPTIG00000010159	UPF1	99	92.138	ENSGAFG00000004831	upf1	95	92.138	Gambusia_affinis
ENSPTIG00000010159	UPF1	66	92.507	ENSGAFG00000015443	-	88	90.237	Gambusia_affinis
ENSPTIG00000010159	UPF1	99	96.929	ENSGAGG00000022217	UPF1	94	96.929	Gopherus_agassizii
ENSPTIG00000010159	UPF1	99	97.596	ENSGGOG00000002608	UPF1	99	97.596	Gorilla_gorilla
ENSPTIG00000010159	UPF1	85	86.207	ENSHBUG00000014694	upf1	90	86.207	Haplochromis_burtoni
ENSPTIG00000010159	UPF1	86	100.000	ENSHBUG00000008939	upf1	90	100.000	Haplochromis_burtoni
ENSPTIG00000010159	UPF1	99	96.099	ENSHGLG00000010900	UPF1	93	96.099	Heterocephalus_glaber_female
ENSPTIG00000010159	UPF1	99	96.812	ENSHGLG00100005904	UPF1	96	96.812	Heterocephalus_glaber_male
ENSPTIG00000010159	UPF1	99	91.659	ENSHCOG00000008918	upf1	100	91.973	Hippocampus_comes
ENSPTIG00000010159	UPF1	99	93.493	ENSIPUG00000005108	UPF1	95	93.971	Ictalurus_punctatus
ENSPTIG00000010159	UPF1	99	97.404	ENSSTOG00000009196	UPF1	93	97.404	Ictidomys_tridecemlineatus
ENSPTIG00000010159	UPF1	99	95.814	ENSJJAG00000023151	Upf1	94	95.814	Jaculus_jaculus
ENSPTIG00000010159	UPF1	99	92.625	ENSKMAG00000004962	upf1	95	92.625	Kryptolebias_marmoratus
ENSPTIG00000010159	UPF1	99	92.440	ENSLBEG00000027848	-	95	92.536	Labrus_bergylta
ENSPTIG00000010159	UPF1	99	89.414	ENSLBEG00000014862	upf1	95	90.737	Labrus_bergylta
ENSPTIG00000010159	UPF1	66	94.261	ENSLACG00000008482	UPF1	100	94.261	Latimeria_chalumnae
ENSPTIG00000010159	UPF1	99	95.206	ENSLOCG00000002072	upf1	95	95.206	Lepisosteus_oculatus
ENSPTIG00000010159	UPF1	99	96.011	ENSLAFG00000014963	UPF1	93	96.011	Loxodonta_africana
ENSPTIG00000010159	UPF1	99	96.575	ENSMFAG00000037748	UPF1	94	96.575	Macaca_fascicularis
ENSPTIG00000010159	UPF1	99	96.575	ENSMMUG00000023286	UPF1	94	96.575	Macaca_mulatta
ENSPTIG00000010159	UPF1	99	96.575	ENSMNEG00000000046	UPF1	94	96.575	Macaca_nemestrina
ENSPTIG00000010159	UPF1	99	96.575	ENSMLEG00000028404	UPF1	99	96.575	Mandrillus_leucophaeus
ENSPTIG00000010159	UPF1	99	91.866	ENSMAMG00000006231	-	95	92.440	Mastacembelus_armatus
ENSPTIG00000010159	UPF1	99	89.623	ENSMAMG00000006229	upf1	95	90.755	Mastacembelus_armatus
ENSPTIG00000010159	UPF1	99	92.433	ENSMZEG00005016386	-	95	92.433	Maylandia_zebra
ENSPTIG00000010159	UPF1	99	89.727	ENSMZEG00005003489	upf1	95	91.090	Maylandia_zebra
ENSPTIG00000010159	UPF1	99	95.627	ENSMGAG00000004745	UPF1	100	95.627	Meleagris_gallopavo
ENSPTIG00000010159	UPF1	99	96.194	ENSMAUG00000011398	Upf1	95	96.194	Mesocricetus_auratus
ENSPTIG00000010159	UPF1	99	97.500	ENSMICG00000001659	UPF1	93	97.500	Microcebus_murinus
ENSPTIG00000010159	UPF1	99	96.194	ENSMOCG00000005699	Upf1	94	96.194	Microtus_ochrogaster
ENSPTIG00000010159	UPF1	99	90.935	ENSMMOG00000007881	upf1	94	91.522	Mola_mola
ENSPTIG00000010159	UPF1	99	93.561	ENSMMOG00000007537	-	99	93.659	Mola_mola
ENSPTIG00000010159	UPF1	99	96.929	ENSMODG00000003689	UPF1	95	96.929	Monodelphis_domestica
ENSPTIG00000010159	UPF1	99	91.516	ENSMALG00000018100	-	95	91.611	Monopterus_albus
ENSPTIG00000010159	UPF1	99	90.787	ENSMALG00000000144	upf1	95	91.171	Monopterus_albus
ENSPTIG00000010159	UPF1	99	97.115	MGP_CAROLIEiJ_G0031142	Upf1	93	97.115	Mus_caroli
ENSPTIG00000010159	UPF1	99	97.115	ENSMUSG00000058301	Upf1	93	97.115	Mus_musculus
ENSPTIG00000010159	UPF1	99	97.115	MGP_PahariEiJ_G0021607	Upf1	93	97.115	Mus_pahari
ENSPTIG00000010159	UPF1	99	97.115	MGP_SPRETEiJ_G0032260	Upf1	93	97.115	Mus_spretus
ENSPTIG00000010159	UPF1	99	97.793	ENSMPUG00000015516	UPF1	93	97.793	Mustela_putorius_furo
ENSPTIG00000010159	UPF1	99	97.601	ENSMLUG00000012122	UPF1	93	97.601	Myotis_lucifugus
ENSPTIG00000010159	UPF1	99	95.909	ENSNGAG00000024107	Upf1	93	95.909	Nannospalax_galili
ENSPTIG00000010159	UPF1	98	91.934	ENSNBRG00000022069	-	100	91.934	Neolamprologus_brichardi
ENSPTIG00000010159	UPF1	99	89.027	ENSNBRG00000000670	upf1	95	89.494	Neolamprologus_brichardi
ENSPTIG00000010159	UPF1	99	90.771	ENSNLEG00000006062	UPF1	99	90.771	Nomascus_leucogenys
ENSPTIG00000010159	UPF1	81	90.196	ENSMEUG00000014146	-	76	90.196	Notamacropus_eugenii
ENSPTIG00000010159	UPF1	99	89.519	ENSOPRG00000014018	UPF1	99	89.519	Ochotona_princeps
ENSPTIG00000010159	UPF1	99	96.289	ENSODEG00000012426	UPF1	95	96.289	Octodon_degus
ENSPTIG00000010159	UPF1	99	92.529	ENSONIG00000012729	-	95	92.529	Oreochromis_niloticus
ENSPTIG00000010159	UPF1	99	90.009	ENSONIG00000010452	upf1	95	91.374	Oreochromis_niloticus
ENSPTIG00000010159	UPF1	100	95.360	ENSOANG00000004568	UPF1	94	95.450	Ornithorhynchus_anatinus
ENSPTIG00000010159	UPF1	99	92.529	ENSORLG00000008453	upf1	95	92.529	Oryzias_latipes
ENSPTIG00000010159	UPF1	99	92.529	ENSORLG00020014758	upf1	95	92.529	Oryzias_latipes_hni
ENSPTIG00000010159	UPF1	99	92.529	ENSORLG00015010165	upf1	100	88.802	Oryzias_latipes_hsok
ENSPTIG00000010159	UPF1	99	92.625	ENSOMEG00000003665	upf1	95	92.625	Oryzias_melastigma
ENSPTIG00000010159	UPF1	99	97.692	ENSOGAG00000012866	UPF1	93	97.692	Otolemur_garnettii
ENSPTIG00000010159	UPF1	96	96.165	ENSOARG00000010739	UPF1	94	96.165	Ovis_aries
ENSPTIG00000010159	UPF1	99	96.575	ENSPPAG00000043884	UPF1	96	96.575	Pan_paniscus
ENSPTIG00000010159	UPF1	99	96.866	ENSPPRG00000023470	UPF1	93	96.866	Panthera_pardus
ENSPTIG00000010159	UPF1	99	96.575	ENSPTRG00000010721	UPF1	94	96.575	Pan_troglodytes
ENSPTIG00000010159	UPF1	99	96.575	ENSPANG00000008847	UPF1	94	96.575	Papio_anubis
ENSPTIG00000010159	UPF1	93	92.253	ENSPKIG00000006069	upf1	94	92.253	Paramormyrops_kingsleyae
ENSPTIG00000010159	UPF1	73	96.570	ENSPSIG00000009491	UPF1	100	96.570	Pelodiscus_sinensis
ENSPTIG00000010159	UPF1	99	89.112	ENSPMGG00000017327	upf1	95	89.323	Periophthalmus_magnuspinnatus
ENSPTIG00000010159	UPF1	99	96.194	ENSPEMG00000001085	Upf1	94	96.194	Peromyscus_maniculatus_bairdii
ENSPTIG00000010159	UPF1	99	87.202	ENSPMAG00000001206	upf1	94	87.202	Petromyzon_marinus
ENSPTIG00000010159	UPF1	99	96.929	ENSPCIG00000006156	UPF1	93	96.929	Phascolarctos_cinereus
ENSPTIG00000010159	UPF1	99	89.459	ENSPLAG00000018155	-	95	89.459	Poecilia_latipinna
ENSPTIG00000010159	UPF1	99	92.234	ENSPLAG00000016232	-	95	92.234	Poecilia_latipinna
ENSPTIG00000010159	UPF1	99	90.048	ENSPMEG00000011443	-	95	90.048	Poecilia_mexicana
ENSPTIG00000010159	UPF1	99	92.146	ENSPMEG00000016319	-	95	92.146	Poecilia_mexicana
ENSPTIG00000010159	UPF1	99	92.042	ENSPREG00000011247	-	95	92.042	Poecilia_reticulata
ENSPTIG00000010159	UPF1	99	90.028	ENSPREG00000009940	upf1	95	90.028	Poecilia_reticulata
ENSPTIG00000010159	UPF1	99	91.246	ENSPPYG00000009752	UPF1	93	91.246	Pongo_abelii
ENSPTIG00000010159	UPF1	71	100.000	ENSPCAG00000012962	UPF1	65	100.000	Procavia_capensis
ENSPTIG00000010159	UPF1	99	96.670	ENSPCOG00000023813	UPF1	94	96.670	Propithecus_coquereli
ENSPTIG00000010159	UPF1	68	100.000	ENSPVAG00000003183	UPF1	62	100.000	Pteropus_vampyrus
ENSPTIG00000010159	UPF1	99	89.727	ENSPNYG00000003694	upf1	95	91.090	Pundamilia_nyererei
ENSPTIG00000010159	UPF1	99	92.433	ENSPNYG00000016731	-	95	92.433	Pundamilia_nyererei
ENSPTIG00000010159	UPF1	99	93.014	ENSPNAG00000025614	upf1	95	93.589	Pygocentrus_nattereri
ENSPTIG00000010159	UPF1	99	97.115	ENSRNOG00000020134	Upf1	93	97.115	Rattus_norvegicus
ENSPTIG00000010159	UPF1	99	94.196	ENSRBIG00000013894	UPF1	98	97.262	Rhinopithecus_bieti
ENSPTIG00000010159	UPF1	99	96.575	ENSRROG00000040935	UPF1	98	97.262	Rhinopithecus_roxellana
ENSPTIG00000010159	UPF1	80	56.145	YMR080C	NAM7	85	56.145	Saccharomyces_cerevisiae
ENSPTIG00000010159	UPF1	99	96.476	ENSSBOG00000023632	UPF1	96	96.476	Saimiri_boliviensis_boliviensis
ENSPTIG00000010159	UPF1	99	95.821	ENSSHAG00000010499	UPF1	100	95.821	Sarcophilus_harrisii
ENSPTIG00000010159	UPF1	100	95.211	ENSSFOG00015021095	upf1	99	95.211	Scleropages_formosus
ENSPTIG00000010159	UPF1	99	92.536	ENSSMAG00000021018	-	95	92.632	Scophthalmus_maximus
ENSPTIG00000010159	UPF1	99	89.036	ENSSMAG00000005055	upf1	95	89.991	Scophthalmus_maximus
ENSPTIG00000010159	UPF1	99	89.906	ENSSDUG00000013320	upf1	95	91.038	Seriola_dumerili
ENSPTIG00000010159	UPF1	99	92.823	ENSSDUG00000009629	-	95	92.919	Seriola_dumerili
ENSPTIG00000010159	UPF1	99	90.762	ENSSLDG00000020868	upf1	95	91.350	Seriola_lalandi_dorsalis
ENSPTIG00000010159	UPF1	99	92.823	ENSSLDG00000006878	-	95	92.919	Seriola_lalandi_dorsalis
ENSPTIG00000010159	UPF1	99	96.641	ENSSPUG00000010538	UPF1	94	96.641	Sphenodon_punctatus
ENSPTIG00000010159	UPF1	99	89.070	ENSSPAG00000000003	upf1	95	89.101	Stegastes_partitus
ENSPTIG00000010159	UPF1	99	92.809	ENSSPAG00000011521	-	95	92.809	Stegastes_partitus
ENSPTIG00000010159	UPF1	100	97.699	ENSSSCG00000039301	UPF1	100	97.699	Sus_scrofa
ENSPTIG00000010159	UPF1	81	88.902	ENSTGUG00000001057	UPF1	89	97.338	Taeniopygia_guttata
ENSPTIG00000010159	UPF1	99	91.659	ENSTRUG00000005131	-	95	91.755	Takifugu_rubripes
ENSPTIG00000010159	UPF1	99	90.787	ENSTRUG00000000150	upf1	95	90.787	Takifugu_rubripes
ENSPTIG00000010159	UPF1	99	93.666	ENSTTRG00000011544	UPF1	93	93.666	Tursiops_truncatus
ENSPTIG00000010159	UPF1	99	97.793	ENSUAMG00000007093	UPF1	93	97.793	Ursus_americanus
ENSPTIG00000010159	UPF1	100	97.795	ENSUMAG00000006652	UPF1	99	97.793	Ursus_maritimus
ENSPTIG00000010159	UPF1	99	97.793	ENSVVUG00000007797	UPF1	93	97.793	Vulpes_vulpes
ENSPTIG00000010159	UPF1	100	84.860	ENSXETG00000013602	upf1	93	84.860	Xenopus_tropicalis
ENSPTIG00000010159	UPF1	96	89.662	ENSXCOG00000015275	-	91	89.662	Xiphophorus_couchianus
ENSPTIG00000010159	UPF1	99	92.629	ENSXCOG00000005764	-	100	92.629	Xiphophorus_couchianus
ENSPTIG00000010159	UPF1	99	91.954	ENSXMAG00000002540	-	95	91.954	Xiphophorus_maculatus
ENSPTIG00000010159	UPF1	99	89.933	ENSXMAG00000001703	-	95	89.933	Xiphophorus_maculatus