EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTIG00000010289 (Gene tree)
Gene ID: 102950256
Gene Symbol: LSM1
Alias: -
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Plus strand
Length: 10364 bases
Position: chrKE722266.1:6343221-6353584
Accession: 102950256
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000009108	LSM	PF01423.22	1.8e-15	1	1
ENSPTIP00000009113	LSM	PF01423.22	2.2e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000013021	LSM1-202	135	-	ENSPTIP00000009113	44 (aa)	-	UPI0000530AD4
ENSPTIT00000013016	LSM1-201	896	XM_007097079	ENSPTIP00000009108	133 (aa)	XP_007097141	UPI000012E963

Gene Model

Click here to download ENSPTIG00000010289's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptg03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000010289's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTIG00000010289	LSM1	65	34.091	ENSPTIG00000004722	LSM8	93	34.328

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000010289	LSM1	100	100.000	ENSG00000175324	LSM1	100	100.000	Homo_sapiens
ENSPTIG00000010289	LSM1	100	85.714	ENSAPOG00000010833	lsm1	100	85.714	Acanthochromis_polyacanthus
ENSPTIG00000010289	LSM1	100	100.000	ENSAMEG00000011141	LSM1	100	100.000	Ailuropoda_melanoleuca
ENSPTIG00000010289	LSM1	89	89.744	ENSACIG00000019593	lsm1	64	92.208	Amphilophus_citrinellus
ENSPTIG00000010289	LSM1	100	85.714	ENSAOCG00000017997	-	100	85.714	Amphiprion_ocellaris
ENSPTIG00000010289	LSM1	100	85.714	ENSAOCG00000017096	lsm1	100	85.714	Amphiprion_ocellaris
ENSPTIG00000010289	LSM1	100	85.714	ENSAPEG00000011669	lsm1	100	85.714	Amphiprion_percula
ENSPTIG00000010289	LSM1	100	84.211	ENSATEG00000022266	lsm1	100	84.211	Anabas_testudineus
ENSPTIG00000010289	LSM1	100	100.000	ENSANAG00000027785	LSM1	100	100.000	Aotus_nancymaae
ENSPTIG00000010289	LSM1	100	84.211	ENSACLG00000011400	lsm1	100	84.211	Astatotilapia_calliptera
ENSPTIG00000010289	LSM1	100	86.466	ENSAMXG00000005441	lsm1	100	86.466	Astyanax_mexicanus
ENSPTIG00000010289	LSM1	100	99.248	ENSBTAG00000001612	LSM1	100	99.248	Bos_taurus
ENSPTIG00000010289	LSM1	84	72.973	WBGene00003076	lsm-1	73	58.065	Caenorhabditis_elegans
ENSPTIG00000010289	LSM1	100	100.000	ENSCJAG00000048015	LSM1	100	100.000	Callithrix_jacchus
ENSPTIG00000010289	LSM1	100	100.000	ENSCAFG00000006113	LSM1	100	100.000	Canis_familiaris
ENSPTIG00000010289	LSM1	100	100.000	ENSCAFG00020001822	LSM1	100	100.000	Canis_lupus_dingo
ENSPTIG00000010289	LSM1	100	100.000	ENSCHIG00000013194	LSM1	100	100.000	Capra_hircus
ENSPTIG00000010289	LSM1	100	100.000	ENSTSYG00000010394	LSM1	100	100.000	Carlito_syrichta
ENSPTIG00000010289	LSM1	100	100.000	ENSCPOG00000032671	LSM1	100	100.000	Cavia_porcellus
ENSPTIG00000010289	LSM1	100	100.000	ENSCCAG00000037171	LSM1	100	100.000	Cebus_capucinus
ENSPTIG00000010289	LSM1	100	100.000	ENSCATG00000020377	LSM1	100	100.000	Cercocebus_atys
ENSPTIG00000010289	LSM1	100	98.496	ENSCLAG00000001137	LSM1	100	98.496	Chinchilla_lanigera
ENSPTIG00000010289	LSM1	100	100.000	ENSCSAG00000015485	LSM1	100	100.000	Chlorocebus_sabaeus
ENSPTIG00000010289	LSM1	100	99.248	ENSCHOG00000006030	LSM1	100	99.248	Choloepus_hoffmanni
ENSPTIG00000010289	LSM1	95	88.976	ENSCPBG00000006569	LSM1	86	88.976	Chrysemys_picta_bellii
ENSPTIG00000010289	LSM1	89	82.051	ENSCING00000013536	-	99	67.424	Ciona_intestinalis
ENSPTIG00000010289	LSM1	100	100.000	ENSCANG00000019173	LSM1	100	100.000	Colobus_angolensis_palliatus
ENSPTIG00000010289	LSM1	70	93.548	ENSCGRG00001002259	-	97	81.982	Cricetulus_griseus_chok1gshd
ENSPTIG00000010289	LSM1	100	99.248	ENSCGRG00001024560	-	100	99.248	Cricetulus_griseus_chok1gshd
ENSPTIG00000010289	LSM1	100	99.248	ENSCGRG00000006554	-	100	99.248	Cricetulus_griseus_crigri
ENSPTIG00000010289	LSM1	70	93.548	ENSCGRG00000013603	-	97	81.982	Cricetulus_griseus_crigri
ENSPTIG00000010289	LSM1	100	82.707	ENSCSEG00000008319	lsm1	92	82.707	Cynoglossus_semilaevis
ENSPTIG00000010289	LSM1	100	83.459	ENSCSEG00000010570	lsm1	92	83.459	Cynoglossus_semilaevis
ENSPTIG00000010289	LSM1	100	83.459	ENSCVAG00000003871	lsm1	100	83.459	Cyprinodon_variegatus
ENSPTIG00000010289	LSM1	100	85.714	ENSDARG00000043177	lsm1	100	85.714	Danio_rerio
ENSPTIG00000010289	LSM1	89	79.832	ENSDNOG00000046620	-	100	79.832	Dasypus_novemcinctus
ENSPTIG00000010289	LSM1	100	100.000	ENSDNOG00000046387	-	100	100.000	Dasypus_novemcinctus
ENSPTIG00000010289	LSM1	100	99.248	ENSDNOG00000032911	-	100	99.248	Dasypus_novemcinctus
ENSPTIG00000010289	LSM1	100	93.985	ENSDNOG00000030989	-	100	93.985	Dasypus_novemcinctus
ENSPTIG00000010289	LSM1	100	100.000	ENSDORG00000028172	Lsm1	100	100.000	Dipodomys_ordii
ENSPTIG00000010289	LSM1	93	63.710	FBgn0261067	LSm1	91	63.710	Drosophila_melanogaster
ENSPTIG00000010289	LSM1	100	98.496	ENSEASG00005016677	LSM1	100	98.496	Equus_asinus_asinus
ENSPTIG00000010289	LSM1	100	98.496	ENSECAG00000010461	LSM1	100	98.496	Equus_caballus
ENSPTIG00000010289	LSM1	89	97.436	ENSEEUG00000015181	LSM1	100	69.925	Erinaceus_europaeus
ENSPTIG00000010289	LSM1	89	97.436	ENSELUG00000023374	lsm1	100	84.211	Esox_lucius
ENSPTIG00000010289	LSM1	100	86.466	ENSELUG00000002322	lsm1	100	86.466	Esox_lucius
ENSPTIG00000010289	LSM1	100	100.000	ENSFCAG00000039335	LSM1	100	100.000	Felis_catus
ENSPTIG00000010289	LSM1	89	94.915	ENSFALG00000006723	LSM1	100	94.915	Ficedula_albicollis
ENSPTIG00000010289	LSM1	100	100.000	ENSFDAG00000007658	LSM1	100	100.000	Fukomys_damarensis
ENSPTIG00000010289	LSM1	100	83.459	ENSFHEG00000009556	lsm1	100	83.459	Fundulus_heteroclitus
ENSPTIG00000010289	LSM1	100	83.459	ENSGMOG00000016651	lsm1	98	83.459	Gadus_morhua
ENSPTIG00000010289	LSM1	100	93.233	ENSGALG00000003245	LSM1	100	93.233	Gallus_gallus
ENSPTIG00000010289	LSM1	100	83.459	ENSGAFG00000011355	lsm1	100	83.459	Gambusia_affinis
ENSPTIG00000010289	LSM1	100	84.211	ENSGACG00000011763	lsm1	98	84.211	Gasterosteus_aculeatus
ENSPTIG00000010289	LSM1	100	95.489	ENSGAGG00000024065	LSM1	100	95.489	Gopherus_agassizii
ENSPTIG00000010289	LSM1	100	100.000	ENSGGOG00000022658	LSM1	100	100.000	Gorilla_gorilla
ENSPTIG00000010289	LSM1	100	84.211	ENSHBUG00000010897	lsm1	100	84.211	Haplochromis_burtoni
ENSPTIG00000010289	LSM1	100	79.699	ENSHGLG00000017574	-	100	79.699	Heterocephalus_glaber_female
ENSPTIG00000010289	LSM1	100	100.000	ENSHGLG00000005711	LSM1	100	100.000	Heterocephalus_glaber_female
ENSPTIG00000010289	LSM1	100	79.699	ENSHGLG00100012152	-	100	79.699	Heterocephalus_glaber_male
ENSPTIG00000010289	LSM1	100	100.000	ENSHGLG00100017660	LSM1	100	100.000	Heterocephalus_glaber_male
ENSPTIG00000010289	LSM1	100	84.211	ENSHCOG00000017233	lsm1	100	84.211	Hippocampus_comes
ENSPTIG00000010289	LSM1	100	84.962	ENSIPUG00000002312	LSM1	100	84.962	Ictalurus_punctatus
ENSPTIG00000010289	LSM1	89	97.436	ENSSTOG00000026870	LSM1	94	100.000	Ictidomys_tridecemlineatus
ENSPTIG00000010289	LSM1	100	98.496	ENSJJAG00000014605	-	100	98.496	Jaculus_jaculus
ENSPTIG00000010289	LSM1	100	84.211	ENSKMAG00000003016	lsm1	100	84.211	Kryptolebias_marmoratus
ENSPTIG00000010289	LSM1	100	84.211	ENSLBEG00000022352	lsm1	100	84.211	Labrus_bergylta
ENSPTIG00000010289	LSM1	89	90.678	ENSLACG00000010947	LSM1	98	90.678	Latimeria_chalumnae
ENSPTIG00000010289	LSM1	100	94.737	ENSLOCG00000015149	lsm1	100	94.737	Lepisosteus_oculatus
ENSPTIG00000010289	LSM1	100	100.000	ENSLAFG00000003534	LSM1	100	100.000	Loxodonta_africana
ENSPTIG00000010289	LSM1	100	100.000	ENSMFAG00000032661	LSM1	100	100.000	Macaca_fascicularis
ENSPTIG00000010289	LSM1	100	100.000	ENSMLEG00000034535	LSM1	100	100.000	Mandrillus_leucophaeus
ENSPTIG00000010289	LSM1	100	84.211	ENSMAMG00000007464	lsm1	100	84.211	Mastacembelus_armatus
ENSPTIG00000010289	LSM1	100	84.211	ENSMZEG00005010321	lsm1	100	84.211	Maylandia_zebra
ENSPTIG00000010289	LSM1	100	93.233	ENSMGAG00000002125	LSM1	100	93.233	Meleagris_gallopavo
ENSPTIG00000010289	LSM1	100	100.000	ENSMICG00000030726	LSM1	100	100.000	Microcebus_murinus
ENSPTIG00000010289	LSM1	100	99.248	ENSMOCG00000022817	Lsm1	100	99.248	Microtus_ochrogaster
ENSPTIG00000010289	LSM1	100	84.962	ENSMMOG00000015466	lsm1	100	84.962	Mola_mola
ENSPTIG00000010289	LSM1	100	97.744	ENSMODG00000010732	-	100	97.744	Monodelphis_domestica
ENSPTIG00000010289	LSM1	89	89.744	ENSMALG00000001478	lsm1	82	92.208	Monopterus_albus
ENSPTIG00000010289	LSM1	100	97.744	MGP_CAROLIEiJ_G0030930	Lsm1	100	97.744	Mus_caroli
ENSPTIG00000010289	LSM1	100	97.744	ENSMUSG00000037296	Lsm1	100	97.744	Mus_musculus
ENSPTIG00000010289	LSM1	100	97.744	MGP_PahariEiJ_G0021400	Lsm1	100	97.744	Mus_pahari
ENSPTIG00000010289	LSM1	100	97.744	MGP_SPRETEiJ_G0032049	Lsm1	100	97.744	Mus_spretus
ENSPTIG00000010289	LSM1	100	99.248	ENSMPUG00000009883	LSM1	100	99.248	Mustela_putorius_furo
ENSPTIG00000010289	LSM1	100	99.248	ENSMLUG00000003734	LSM1	100	99.248	Myotis_lucifugus
ENSPTIG00000010289	LSM1	100	99.248	ENSNGAG00000003753	Lsm1	100	99.248	Nannospalax_galili
ENSPTIG00000010289	LSM1	89	89.744	ENSNBRG00000017370	lsm1	66	92.208	Neolamprologus_brichardi
ENSPTIG00000010289	LSM1	100	100.000	ENSNLEG00000029390	LSM1	100	100.000	Nomascus_leucogenys
ENSPTIG00000010289	LSM1	100	97.744	ENSMEUG00000014077	LSM1	100	97.744	Notamacropus_eugenii
ENSPTIG00000010289	LSM1	88	94.017	ENSOPRG00000000333	LSM1	100	94.017	Ochotona_princeps
ENSPTIG00000010289	LSM1	100	100.000	ENSODEG00000004834	LSM1	100	100.000	Octodon_degus
ENSPTIG00000010289	LSM1	100	84.211	ENSONIG00000010782	lsm1	100	84.211	Oreochromis_niloticus
ENSPTIG00000010289	LSM1	100	96.992	ENSOANG00000003256	LSM1	100	96.992	Ornithorhynchus_anatinus
ENSPTIG00000010289	LSM1	100	100.000	ENSOCUG00000015399	LSM1	100	100.000	Oryctolagus_cuniculus
ENSPTIG00000010289	LSM1	100	85.714	ENSORLG00000030288	lsm1	100	85.714	Oryzias_latipes
ENSPTIG00000010289	LSM1	100	85.714	ENSORLG00020003941	lsm1	100	85.714	Oryzias_latipes_hni
ENSPTIG00000010289	LSM1	100	84.211	ENSORLG00020006213	-	86	84.211	Oryzias_latipes_hni
ENSPTIG00000010289	LSM1	100	85.714	ENSORLG00015018350	lsm1	100	85.714	Oryzias_latipes_hsok
ENSPTIG00000010289	LSM1	100	84.211	ENSOMEG00000012454	lsm1	100	84.211	Oryzias_melastigma
ENSPTIG00000010289	LSM1	100	100.000	ENSOGAG00000015161	LSM1	100	100.000	Otolemur_garnettii
ENSPTIG00000010289	LSM1	100	100.000	ENSOARG00000001317	LSM1	100	100.000	Ovis_aries
ENSPTIG00000010289	LSM1	100	100.000	ENSPPAG00000032279	LSM1	100	100.000	Pan_paniscus
ENSPTIG00000010289	LSM1	100	100.000	ENSPPRG00000014172	-	100	100.000	Panthera_pardus
ENSPTIG00000010289	LSM1	100	100.000	ENSPTRG00000020169	LSM1	100	100.000	Pan_troglodytes
ENSPTIG00000010289	LSM1	100	100.000	ENSPANG00000008814	LSM1	100	100.000	Papio_anubis
ENSPTIG00000010289	LSM1	100	82.707	ENSPKIG00000019409	LSM1	99	82.707	Paramormyrops_kingsleyae
ENSPTIG00000010289	LSM1	100	90.226	ENSPKIG00000001839	lsm1	100	90.226	Paramormyrops_kingsleyae
ENSPTIG00000010289	LSM1	98	89.231	ENSPSIG00000012563	LSM1	99	89.231	Pelodiscus_sinensis
ENSPTIG00000010289	LSM1	89	89.744	ENSPMGG00000022999	lsm1	73	92.208	Periophthalmus_magnuspinnatus
ENSPTIG00000010289	LSM1	85	80.531	ENSPMAG00000002671	lsm1	100	80.531	Petromyzon_marinus
ENSPTIG00000010289	LSM1	100	96.241	ENSPCIG00000008880	LSM1	100	96.241	Phascolarctos_cinereus
ENSPTIG00000010289	LSM1	100	83.459	ENSPFOG00000016029	lsm1	100	83.459	Poecilia_formosa
ENSPTIG00000010289	LSM1	100	83.459	ENSPLAG00000007879	lsm1	100	83.459	Poecilia_latipinna
ENSPTIG00000010289	LSM1	100	83.459	ENSPMEG00000023550	lsm1	100	83.459	Poecilia_mexicana
ENSPTIG00000010289	LSM1	100	83.459	ENSPREG00000009574	lsm1	100	83.459	Poecilia_reticulata
ENSPTIG00000010289	LSM1	100	100.000	ENSPPYG00000018521	LSM1	100	100.000	Pongo_abelii
ENSPTIG00000010289	LSM1	100	100.000	ENSPCOG00000020901	-	100	100.000	Propithecus_coquereli
ENSPTIG00000010289	LSM1	100	100.000	ENSPVAG00000006016	LSM1	100	100.000	Pteropus_vampyrus
ENSPTIG00000010289	LSM1	100	84.211	ENSPNYG00000018067	lsm1	100	84.211	Pundamilia_nyererei
ENSPTIG00000010289	LSM1	100	85.714	ENSPNAG00000013707	lsm1	100	85.714	Pygocentrus_nattereri
ENSPTIG00000010289	LSM1	100	97.744	ENSRNOG00000015375	Lsm1	100	97.744	Rattus_norvegicus
ENSPTIG00000010289	LSM1	100	100.000	ENSRBIG00000027449	LSM1	100	100.000	Rhinopithecus_bieti
ENSPTIG00000010289	LSM1	100	100.000	ENSRROG00000036074	LSM1	100	100.000	Rhinopithecus_roxellana
ENSPTIG00000010289	LSM1	100	97.744	ENSSHAG00000017260	LSM1	100	97.744	Sarcophilus_harrisii
ENSPTIG00000010289	LSM1	100	91.729	ENSSFOG00015019528	lsm1	100	91.729	Scleropages_formosus
ENSPTIG00000010289	LSM1	100	84.211	ENSSMAG00000004930	lsm1	100	84.211	Scophthalmus_maximus
ENSPTIG00000010289	LSM1	100	84.211	ENSSDUG00000021823	lsm1	100	84.211	Seriola_dumerili
ENSPTIG00000010289	LSM1	100	84.211	ENSSLDG00000012154	lsm1	100	84.211	Seriola_lalandi_dorsalis
ENSPTIG00000010289	LSM1	100	95.489	ENSSPUG00000014878	LSM1	100	95.489	Sphenodon_punctatus
ENSPTIG00000010289	LSM1	100	84.962	ENSSPAG00000020548	lsm1	100	84.962	Stegastes_partitus
ENSPTIG00000010289	LSM1	100	98.496	ENSSSCG00000039058	LSM1	100	98.496	Sus_scrofa
ENSPTIG00000010289	LSM1	100	94.737	ENSTGUG00000004793	LSM1	100	94.737	Taeniopygia_guttata
ENSPTIG00000010289	LSM1	100	86.466	ENSTRUG00000025239	lsm1	100	86.466	Takifugu_rubripes
ENSPTIG00000010289	LSM1	100	86.466	ENSTNIG00000004055	lsm1	100	86.466	Tetraodon_nigroviridis
ENSPTIG00000010289	LSM1	88	97.436	ENSTBEG00000015884	LSM1	100	97.436	Tupaia_belangeri
ENSPTIG00000010289	LSM1	100	100.000	ENSTTRG00000004482	LSM1	100	100.000	Tursiops_truncatus
ENSPTIG00000010289	LSM1	100	100.000	ENSUAMG00000004103	LSM1	100	100.000	Ursus_americanus
ENSPTIG00000010289	LSM1	100	100.000	ENSUMAG00000009132	LSM1	100	100.000	Ursus_maritimus
ENSPTIG00000010289	LSM1	89	94.872	ENSVPAG00000011593	LSM1	100	98.701	Vicugna_pacos
ENSPTIG00000010289	LSM1	100	100.000	ENSVVUG00000020191	LSM1	100	100.000	Vulpes_vulpes
ENSPTIG00000010289	LSM1	89	61.538	ENSVVUG00000014880	-	91	69.767	Vulpes_vulpes
ENSPTIG00000010289	LSM1	100	92.701	ENSXETG00000009004	lsm1	100	92.701	Xenopus_tropicalis
ENSPTIG00000010289	LSM1	100	82.707	ENSXCOG00000015631	lsm1	100	82.707	Xiphophorus_couchianus
ENSPTIG00000010289	LSM1	100	82.707	ENSXMAG00000026637	lsm1	100	82.707	Xiphophorus_maculatus