EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTIG00000012135 (Gene tree)
Gene ID: 102959344
Gene Symbol: PARN
Alias: -
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Plus strand
Length: 167213 bases
Position: chrKE721685.1:44197-211409
Accession: 102959344
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000011947	R3H	PF01424.22	3.6e-05	1	1
ENSPTIP00000011925	R3H	PF01424.22	3.9e-05	1	1
ENSPTIP00000011962	RNA_bind	PF08675.11	1.4e-33	1	1
ENSPTIP00000011947	RNA_bind	PF08675.11	2e-33	1	1
ENSPTIP00000011925	RNA_bind	PF08675.11	2.1e-33	1	1
ENSPTIP00000011925	CAF1	PF04857.20	3e-89	1	1
ENSPTIP00000011947	CAF1	PF04857.20	4.8e-68	1	2
ENSPTIP00000011947	CAF1	PF04857.20	4.8e-68	2	2
ENSPTIP00000011962	CAF1	PF04857.20	2.3e-52	1	2
ENSPTIP00000011962	CAF1	PF04857.20	2.3e-52	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000015958	PARN-202	1779	-	ENSPTIP00000011947	592 (aa)	-	-
ENSPTIT00000015972	PARN-203	1392	-	ENSPTIP00000011962	463 (aa)	-	-
ENSPTIT00000015936	PARN-201	2770	XM_007076862	ENSPTIP00000011925	638 (aa)	XP_007076924	UPI00042BAC7A

Gene Model

Click here to download ENSPTIG00000012135's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptg03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000012135's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000012135	PARN	100	96.610	ENSG00000140694	PARN	100	96.610	Homo_sapiens
ENSPTIG00000012135	PARN	100	96.610	ENSAMEG00000011208	PARN	100	95.775	Ailuropoda_melanoleuca
ENSPTIG00000012135	PARN	83	75.933	ENSACIG00000000619	parn	83	75.933	Amphilophus_citrinellus
ENSPTIG00000012135	PARN	83	78.464	ENSAOCG00000003465	parn	78	78.464	Amphiprion_ocellaris
ENSPTIG00000012135	PARN	74	78.224	ENSAPEG00000010661	parn	91	78.224	Amphiprion_percula
ENSPTIG00000012135	PARN	83	79.478	ENSATEG00000004661	parn	78	79.478	Anabas_testudineus
ENSPTIG00000012135	PARN	99	83.096	ENSAPLG00000013914	PARN	99	83.096	Anas_platyrhynchos
ENSPTIG00000012135	PARN	100	88.136	ENSACAG00000004973	PARN	100	78.714	Anolis_carolinensis
ENSPTIG00000012135	PARN	100	96.610	ENSANAG00000031516	PARN	100	96.610	Aotus_nancymaae
ENSPTIG00000012135	PARN	90	74.443	ENSACLG00000004742	parn	79	79.401	Astatotilapia_calliptera
ENSPTIG00000012135	PARN	88	77.966	ENSAMXG00000012390	parn	94	71.062	Astyanax_mexicanus
ENSPTIG00000012135	PARN	100	98.305	ENSBTAG00000018097	PARN	100	94.627	Bos_taurus
ENSPTIG00000012135	PARN	100	96.610	ENSCJAG00000015866	PARN	100	96.610	Callithrix_jacchus
ENSPTIG00000012135	PARN	100	95.925	ENSCAFG00000018795	PARN	100	95.925	Canis_familiaris
ENSPTIG00000012135	PARN	100	96.610	ENSCAFG00020024126	PARN	100	95.925	Canis_lupus_dingo
ENSPTIG00000012135	PARN	100	98.305	ENSCHIG00000018143	PARN	100	95.141	Capra_hircus
ENSPTIG00000012135	PARN	73	62.370	ENSCAPG00000007984	PARN	78	62.370	Cavia_aperea
ENSPTIG00000012135	PARN	100	94.915	ENSCPOG00000002263	PARN	100	90.125	Cavia_porcellus
ENSPTIG00000012135	PARN	100	96.610	ENSCCAG00000030367	PARN	100	96.610	Cebus_capucinus
ENSPTIG00000012135	PARN	52	35.862	ENSCATG00000033196	PNLDC1	70	36.111	Cercocebus_atys
ENSPTIG00000012135	PARN	90	97.363	ENSCATG00000041368	PARN	100	97.363	Cercocebus_atys
ENSPTIG00000012135	PARN	100	93.220	ENSCLAG00000015406	PARN	99	90.596	Chinchilla_lanigera
ENSPTIG00000012135	PARN	100	96.610	ENSCSAG00000008142	PARN	100	93.740	Chlorocebus_sabaeus
ENSPTIG00000012135	PARN	98	98.077	ENSCHOG00000007014	PARN	100	77.813	Choloepus_hoffmanni
ENSPTIG00000012135	PARN	90	84.615	ENSCPBG00000006609	PARN	97	85.370	Chrysemys_picta_bellii
ENSPTIG00000012135	PARN	80	44.090	ENSCING00000010142	-	99	44.090	Ciona_intestinalis
ENSPTIG00000012135	PARN	100	96.610	ENSCANG00000028849	-	100	96.610	Colobus_angolensis_palliatus
ENSPTIG00000012135	PARN	74	30.103	ENSCGRG00001007470	-	86	30.103	Cricetulus_griseus_chok1gshd
ENSPTIG00000012135	PARN	100	96.610	ENSCGRG00001012096	Parn	100	84.867	Cricetulus_griseus_chok1gshd
ENSPTIG00000012135	PARN	100	96.610	ENSCGRG00000004939	Parn	100	84.867	Cricetulus_griseus_crigri
ENSPTIG00000012135	PARN	74	30.103	ENSCGRG00000010221	-	86	30.103	Cricetulus_griseus_crigri
ENSPTIG00000012135	PARN	99	79.245	ENSCSEG00000002064	parn	100	64.253	Cynoglossus_semilaevis
ENSPTIG00000012135	PARN	83	77.985	ENSCVAG00000014848	parn	79	77.985	Cyprinodon_variegatus
ENSPTIG00000012135	PARN	100	63.174	ENSDARG00000102634	parn	100	59.259	Danio_rerio
ENSPTIG00000012135	PARN	100	98.305	ENSDNOG00000000833	PARN	98	96.403	Dasypus_novemcinctus
ENSPTIG00000012135	PARN	74	93.916	ENSETEG00000014828	-	78	93.916	Echinops_telfairi
ENSPTIG00000012135	PARN	56	30.372	ENSEBUG00000008118	PNLDC1	61	30.372	Eptatretus_burgeri
ENSPTIG00000012135	PARN	100	98.305	ENSEASG00005011400	PARN	100	94.671	Equus_asinus_asinus
ENSPTIG00000012135	PARN	100	96.610	ENSECAG00000017792	PARN	100	94.514	Equus_caballus
ENSPTIG00000012135	PARN	86	84.163	ENSEEUG00000010370	PARN	77	94.444	Erinaceus_europaeus
ENSPTIG00000012135	PARN	89	77.966	ENSELUG00000013139	parn	77	71.477	Esox_lucius
ENSPTIG00000012135	PARN	100	100.000	ENSFCAG00000044961	PARN	100	100.000	Felis_catus
ENSPTIG00000012135	PARN	58	31.579	ENSFALG00000012081	PNLDC1	70	31.579	Ficedula_albicollis
ENSPTIG00000012135	PARN	98	86.538	ENSFALG00000003911	PARN	98	82.726	Ficedula_albicollis
ENSPTIG00000012135	PARN	100	94.915	ENSFDAG00000009234	PARN	100	89.969	Fukomys_damarensis
ENSPTIG00000012135	PARN	89	76.271	ENSFHEG00000013738	parn	92	76.271	Fundulus_heteroclitus
ENSPTIG00000012135	PARN	83	76.119	ENSGMOG00000003231	parn	97	76.119	Gadus_morhua
ENSPTIG00000012135	PARN	100	89.831	ENSGALG00000003091	PARN	100	82.132	Gallus_gallus
ENSPTIG00000012135	PARN	86	77.966	ENSGAFG00000011061	parn	84	71.906	Gambusia_affinis
ENSPTIG00000012135	PARN	100	72.881	ENSGACG00000019501	parn	100	68.168	Gasterosteus_aculeatus
ENSPTIG00000012135	PARN	70	79.027	ENSGAGG00000023281	PARN	83	79.027	Gopherus_agassizii
ENSPTIG00000012135	PARN	96	96.610	ENSGGOG00000025224	PARN	100	96.610	Gorilla_gorilla
ENSPTIG00000012135	PARN	83	79.401	ENSHBUG00000017906	parn	90	77.281	Haplochromis_burtoni
ENSPTIG00000012135	PARN	100	94.915	ENSHGLG00000010886	PARN	100	89.812	Heterocephalus_glaber_female
ENSPTIG00000012135	PARN	100	94.915	ENSHGLG00100014659	PARN	100	89.812	Heterocephalus_glaber_male
ENSPTIG00000012135	PARN	82	73.157	ENSHCOG00000008683	parn	91	73.157	Hippocampus_comes
ENSPTIG00000012135	PARN	100	67.797	ENSIPUG00000012401	parn	84	62.762	Ictalurus_punctatus
ENSPTIG00000012135	PARN	100	100.000	ENSSTOG00000007519	PARN	100	92.633	Ictidomys_tridecemlineatus
ENSPTIG00000012135	PARN	100	98.305	ENSJJAG00000023049	Parn	100	88.715	Jaculus_jaculus
ENSPTIG00000012135	PARN	83	78.545	ENSKMAG00000009462	parn	79	78.545	Kryptolebias_marmoratus
ENSPTIG00000012135	PARN	89	76.271	ENSLBEG00000009167	parn	90	72.007	Labrus_bergylta
ENSPTIG00000012135	PARN	79	78.968	ENSLACG00000004207	PARN	100	77.358	Latimeria_chalumnae
ENSPTIG00000012135	PARN	89	79.661	ENSLOCG00000000715	parn	85	74.660	Lepisosteus_oculatus
ENSPTIG00000012135	PARN	100	98.305	ENSLAFG00000015036	PARN	100	93.260	Loxodonta_africana
ENSPTIG00000012135	PARN	100	96.610	ENSMFAG00000044852	PARN	100	96.610	Macaca_fascicularis
ENSPTIG00000012135	PARN	100	96.610	ENSMMUG00000018849	PARN	100	96.610	Macaca_mulatta
ENSPTIG00000012135	PARN	100	96.610	ENSMNEG00000045108	PARN	100	96.610	Macaca_nemestrina
ENSPTIG00000012135	PARN	100	96.610	ENSMLEG00000031743	PARN	100	96.610	Mandrillus_leucophaeus
ENSPTIG00000012135	PARN	83	77.985	ENSMAMG00000006939	parn	78	77.985	Mastacembelus_armatus
ENSPTIG00000012135	PARN	87	76.271	ENSMZEG00005013590	parn	98	72.727	Maylandia_zebra
ENSPTIG00000012135	PARN	94	96.552	ENSMGAG00000001004	PARN	95	82.237	Meleagris_gallopavo
ENSPTIG00000012135	PARN	95	91.429	ENSMAUG00000008025	Parn	100	79.045	Mesocricetus_auratus
ENSPTIG00000012135	PARN	100	98.305	ENSMICG00000016053	PARN	100	98.305	Microcebus_murinus
ENSPTIG00000012135	PARN	77	91.093	ENSMOCG00000022211	Parn	100	91.093	Microtus_ochrogaster
ENSPTIG00000012135	PARN	83	76.262	ENSMMOG00000011333	parn	87	76.262	Mola_mola
ENSPTIG00000012135	PARN	77	94.153	ENSMODG00000004915	PARN	99	94.153	Monodelphis_domestica
ENSPTIG00000012135	PARN	83	78.771	ENSMALG00000019426	parn	91	78.771	Monopterus_albus
ENSPTIG00000012135	PARN	100	94.915	MGP_CAROLIEiJ_G0020466	Parn	100	85.580	Mus_caroli
ENSPTIG00000012135	PARN	100	93.220	ENSMUSG00000022685	Parn	100	92.683	Mus_musculus
ENSPTIG00000012135	PARN	100	96.610	MGP_PahariEiJ_G0016172	Parn	100	85.423	Mus_pahari
ENSPTIG00000012135	PARN	100	94.915	MGP_SPRETEiJ_G0021361	Parn	100	85.423	Mus_spretus
ENSPTIG00000012135	PARN	100	98.305	ENSMPUG00000014464	PARN	100	95.611	Mustela_putorius_furo
ENSPTIG00000012135	PARN	77	94.737	ENSMLUG00000005414	PARN	100	94.737	Myotis_lucifugus
ENSPTIG00000012135	PARN	87	76.271	ENSNBRG00000006805	parn	98	72.193	Neolamprologus_brichardi
ENSPTIG00000012135	PARN	100	96.610	ENSNLEG00000010241	PARN	100	96.610	Nomascus_leucogenys
ENSPTIG00000012135	PARN	93	94.231	ENSMEUG00000008178	-	68	94.231	Notamacropus_eugenii
ENSPTIG00000012135	PARN	98	98.077	ENSOPRG00000012187	PARN	100	86.529	Ochotona_princeps
ENSPTIG00000012135	PARN	100	94.915	ENSODEG00000001617	PARN	100	81.747	Octodon_degus
ENSPTIG00000012135	PARN	100	76.271	ENSONIG00000000151	parn	100	69.479	Oreochromis_niloticus
ENSPTIG00000012135	PARN	82	83.421	ENSOANG00000020155	-	97	83.990	Ornithorhynchus_anatinus
ENSPTIG00000012135	PARN	99	91.496	ENSOCUG00000000322	PARN	100	91.496	Oryctolagus_cuniculus
ENSPTIG00000012135	PARN	86	77.966	ENSORLG00020010313	parn	85	72.712	Oryzias_latipes_hni
ENSPTIG00000012135	PARN	86	77.966	ENSORLG00015000300	parn	85	72.712	Oryzias_latipes_hsok
ENSPTIG00000012135	PARN	89	77.966	ENSOMEG00000019555	parn	97	66.968	Oryzias_melastigma
ENSPTIG00000012135	PARN	77	93.939	ENSOGAG00000014626	PARN	100	93.939	Otolemur_garnettii
ENSPTIG00000012135	PARN	77	97.976	ENSOARG00000007574	PARN	100	97.976	Ovis_aries
ENSPTIG00000012135	PARN	100	96.610	ENSPPAG00000031438	PARN	100	96.610	Pan_paniscus
ENSPTIG00000012135	PARN	100	100.000	ENSPPRG00000018583	PARN	100	100.000	Panthera_pardus
ENSPTIG00000012135	PARN	100	96.610	ENSPTRG00000007792	PARN	100	96.610	Pan_troglodytes
ENSPTIG00000012135	PARN	100	96.610	ENSPANG00000020099	PARN	100	96.610	Papio_anubis
ENSPTIG00000012135	PARN	98	77.966	ENSPKIG00000022807	parn	99	65.211	Paramormyrops_kingsleyae
ENSPTIG00000012135	PARN	97	88.136	ENSPSIG00000014804	PARN	100	83.621	Pelodiscus_sinensis
ENSPTIG00000012135	PARN	80	76.848	ENSPMGG00000014431	parn	77	73.466	Periophthalmus_magnuspinnatus
ENSPTIG00000012135	PARN	100	94.915	ENSPEMG00000018439	Parn	100	83.542	Peromyscus_maniculatus_bairdii
ENSPTIG00000012135	PARN	80	68.217	ENSPMAG00000003956	parn	98	68.217	Petromyzon_marinus
ENSPTIG00000012135	PARN	66	86.525	ENSPCIG00000001259	PARN	91	91.525	Phascolarctos_cinereus
ENSPTIG00000012135	PARN	83	77.799	ENSPFOG00000012823	parn	84	71.812	Poecilia_formosa
ENSPTIG00000012135	PARN	83	77.985	ENSPLAG00000006395	parn	84	71.980	Poecilia_latipinna
ENSPTIG00000012135	PARN	83	77.985	ENSPMEG00000007711	parn	84	71.980	Poecilia_mexicana
ENSPTIG00000012135	PARN	83	77.612	ENSPREG00000000147	parn	84	71.644	Poecilia_reticulata
ENSPTIG00000012135	PARN	100	94.915	ENSPPYG00000007123	PARN	100	93.136	Pongo_abelii
ENSPTIG00000012135	PARN	93	100.000	ENSPCAG00000001741	PARN	100	82.645	Procavia_capensis
ENSPTIG00000012135	PARN	100	98.305	ENSPCOG00000019292	PARN	100	98.305	Propithecus_coquereli
ENSPTIG00000012135	PARN	98	98.077	ENSPVAG00000002547	PARN	100	90.333	Pteropus_vampyrus
ENSPTIG00000012135	PARN	87	76.271	ENSPNYG00000006835	parn	98	70.205	Pundamilia_nyererei
ENSPTIG00000012135	PARN	82	74.715	ENSPNAG00000018905	parn	84	74.715	Pygocentrus_nattereri
ENSPTIG00000012135	PARN	100	94.915	ENSRNOG00000002912	Parn	98	85.859	Rattus_norvegicus
ENSPTIG00000012135	PARN	72	89.790	ENSRBIG00000018726	PARN	100	89.790	Rhinopithecus_bieti
ENSPTIG00000012135	PARN	72	89.790	ENSRROG00000011162	-	100	89.790	Rhinopithecus_roxellana
ENSPTIG00000012135	PARN	100	96.610	ENSSBOG00000034726	PARN	100	96.610	Saimiri_boliviensis_boliviensis
ENSPTIG00000012135	PARN	62	30.318	ENSSHAG00000015192	PNLDC1	65	30.318	Sarcophilus_harrisii
ENSPTIG00000012135	PARN	66	93.301	ENSSHAG00000008493	PARN	94	93.301	Sarcophilus_harrisii
ENSPTIG00000012135	PARN	94	77.966	ENSSFOG00015014165	parn	92	73.730	Scleropages_formosus
ENSPTIG00000012135	PARN	83	76.119	ENSSMAG00000000685	parn	100	62.866	Scophthalmus_maximus
ENSPTIG00000012135	PARN	86	75.812	ENSSDUG00000014555	parn	83	72.867	Seriola_dumerili
ENSPTIG00000012135	PARN	91	80.656	ENSSARG00000014339	PARN	100	80.656	Sorex_araneus
ENSPTIG00000012135	PARN	100	88.136	ENSSPUG00000007719	PARN	100	84.483	Sphenodon_punctatus
ENSPTIG00000012135	PARN	91	74.194	ENSSPAG00000007095	parn	86	74.532	Stegastes_partitus
ENSPTIG00000012135	PARN	100	98.305	ENSSSCG00000007878	PARN	89	93.574	Sus_scrofa
ENSPTIG00000012135	PARN	99	85.185	ENSTGUG00000004971	PARN	99	82.780	Taeniopygia_guttata
ENSPTIG00000012135	PARN	55	31.476	ENSTGUG00000011418	PNLDC1	68	31.476	Taeniopygia_guttata
ENSPTIG00000012135	PARN	100	77.966	ENSTNIG00000008252	parn	100	68.576	Tetraodon_nigroviridis
ENSPTIG00000012135	PARN	91	78.756	ENSTBEG00000010407	PARN	100	78.756	Tupaia_belangeri
ENSPTIG00000012135	PARN	98	98.077	ENSTTRG00000002843	PARN	100	89.857	Tursiops_truncatus
ENSPTIG00000012135	PARN	68	85.092	ENSUAMG00000008283	PARN	90	85.092	Ursus_americanus
ENSPTIG00000012135	PARN	100	98.305	ENSUMAG00000004527	PARN	100	96.238	Ursus_maritimus
ENSPTIG00000012135	PARN	95	98.077	ENSVPAG00000008968	PARN	100	91.368	Vicugna_pacos
ENSPTIG00000012135	PARN	100	96.610	ENSVVUG00000019509	PARN	100	96.395	Vulpes_vulpes
ENSPTIG00000012135	PARN	100	80.328	ENSXETG00000010994	parn	100	82.890	Xenopus_tropicalis
ENSPTIG00000012135	PARN	86	77.966	ENSXCOG00000015990	parn	96	68.519	Xiphophorus_couchianus
ENSPTIG00000012135	PARN	89	77.966	ENSXMAG00000014783	parn	84	72.222	Xiphophorus_maculatus