EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTIG00000012704 (Gene tree)
Gene ID: 107180691
Gene Symbol: -
Alias: -
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Minus strand
Length: 18088 bases
Position: chrKE722070.1:541796-559883
Accession: 107180691
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000012736	AD	PF09793.9	1.8e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000016769	-	564	XM_015542728	ENSPTIP00000012736	187 (aa)	XP_015398214	-

Gene Model

Click here to download ENSPTIG00000012704's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000012704's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTIG00000012704	-	59	96.396	ENSPTIG00000014850	-	81	96.396

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000012704	-	82	100.000	ENSG00000161654	LSM12	78	100.000	Homo_sapiens
ENSPTIG00000012704	-	82	86.275	ENSAPOG00000007907	lsm12b	78	86.275	Acanthochromis_polyacanthus
ENSPTIG00000012704	-	82	100.000	ENSAMEG00000018321	LSM12	77	100.000	Ailuropoda_melanoleuca
ENSPTIG00000012704	-	82	84.314	ENSACIG00000008538	lsm12b	78	84.314	Amphilophus_citrinellus
ENSPTIG00000012704	-	82	85.621	ENSAOCG00000021847	lsm12b	68	85.621	Amphiprion_ocellaris
ENSPTIG00000012704	-	82	85.621	ENSAPEG00000002252	lsm12b	78	85.621	Amphiprion_percula
ENSPTIG00000012704	-	82	84.967	ENSATEG00000005705	lsm12b	78	84.967	Anabas_testudineus
ENSPTIG00000012704	-	82	94.118	ENSACAG00000004618	LSM12	79	94.118	Anolis_carolinensis
ENSPTIG00000012704	-	82	100.000	ENSANAG00000029011	LSM12	81	98.198	Aotus_nancymaae
ENSPTIG00000012704	-	82	84.967	ENSACLG00000026332	lsm12b	78	84.967	Astatotilapia_calliptera
ENSPTIG00000012704	-	82	80.392	ENSAMXG00000036117	lsm12a	71	80.392	Astyanax_mexicanus
ENSPTIG00000012704	-	82	84.967	ENSAMXG00000032952	lsm12b	78	84.967	Astyanax_mexicanus
ENSPTIG00000012704	-	82	100.000	ENSBTAG00000016252	LSM12	78	100.000	Bos_taurus
ENSPTIG00000012704	-	82	100.000	ENSCJAG00000048480	LSM12	81	98.198	Callithrix_jacchus
ENSPTIG00000012704	-	82	100.000	ENSCAFG00000014379	LSM12	72	100.000	Canis_familiaris
ENSPTIG00000012704	-	82	100.000	ENSCAFG00020012173	LSM12	78	100.000	Canis_lupus_dingo
ENSPTIG00000012704	-	82	100.000	ENSCHIG00000018175	LSM12	78	100.000	Capra_hircus
ENSPTIG00000012704	-	82	100.000	ENSTSYG00000036361	LSM12	78	100.000	Carlito_syrichta
ENSPTIG00000012704	-	82	98.693	ENSCAPG00000009647	LSM12	84	98.693	Cavia_aperea
ENSPTIG00000012704	-	82	98.693	ENSCPOG00000012860	LSM12	81	96.396	Cavia_porcellus
ENSPTIG00000012704	-	82	100.000	ENSCCAG00000032905	LSM12	81	98.198	Cebus_capucinus
ENSPTIG00000012704	-	82	100.000	ENSCATG00000030577	-	81	98.198	Cercocebus_atys
ENSPTIG00000012704	-	82	98.693	ENSCLAG00000015759	LSM12	81	96.396	Chinchilla_lanigera
ENSPTIG00000012704	-	82	99.346	ENSCSAG00000003486	LSM12	78	99.346	Chlorocebus_sabaeus
ENSPTIG00000012704	-	58	99.083	ENSCHOG00000001198	LSM12	100	99.083	Choloepus_hoffmanni
ENSPTIG00000012704	-	82	92.810	ENSCPBG00000027105	LSM12	79	92.810	Chrysemys_picta_bellii
ENSPTIG00000012704	-	82	100.000	ENSCANG00000043328	LSM12	81	98.198	Colobus_angolensis_palliatus
ENSPTIG00000012704	-	82	100.000	ENSCGRG00001002094	Lsm12	81	98.198	Cricetulus_griseus_chok1gshd
ENSPTIG00000012704	-	82	100.000	ENSCGRG00000004316	Lsm12	86	100.000	Cricetulus_griseus_crigri
ENSPTIG00000012704	-	82	84.314	ENSCSEG00000008434	lsm12b	78	84.314	Cynoglossus_semilaevis
ENSPTIG00000012704	-	82	84.967	ENSCVAG00000008755	lsm12b	78	84.967	Cyprinodon_variegatus
ENSPTIG00000012704	-	82	85.621	ENSDARG00000109510	lsm12b	78	85.621	Danio_rerio
ENSPTIG00000012704	-	82	75.163	ENSDARG00000028848	lsm12a	78	75.163	Danio_rerio
ENSPTIG00000012704	-	82	99.346	ENSDNOG00000002418	LSM12	71	99.346	Dasypus_novemcinctus
ENSPTIG00000012704	-	82	100.000	ENSDORG00000016381	Lsm12	81	98.198	Dipodomys_ordii
ENSPTIG00000012704	-	82	88.235	ENSETEG00000011012	-	87	88.235	Echinops_telfairi
ENSPTIG00000012704	-	82	99.346	ENSETEG00000008374	LSM12	78	99.346	Echinops_telfairi
ENSPTIG00000012704	-	68	60.156	ENSEBUG00000016299	lsm12a	72	60.156	Eptatretus_burgeri
ENSPTIG00000012704	-	82	100.000	ENSEASG00005010155	LSM12	78	100.000	Equus_asinus_asinus
ENSPTIG00000012704	-	82	100.000	ENSECAG00000009071	LSM12	81	98.198	Equus_caballus
ENSPTIG00000012704	-	82	98.693	ENSEEUG00000002419	-	100	98.693	Erinaceus_europaeus
ENSPTIG00000012704	-	82	81.699	ENSELUG00000000256	-	78	81.699	Esox_lucius
ENSPTIG00000012704	-	82	83.660	ENSELUG00000015538	lsm12b	72	83.660	Esox_lucius
ENSPTIG00000012704	-	82	100.000	ENSFCAG00000037021	LSM12	78	100.000	Felis_catus
ENSPTIG00000012704	-	79	99.324	ENSFDAG00000008954	LSM12	87	99.324	Fukomys_damarensis
ENSPTIG00000012704	-	82	83.660	ENSFHEG00000019913	lsm12b	78	83.660	Fundulus_heteroclitus
ENSPTIG00000012704	-	82	84.314	ENSGMOG00000015449	lsm12b	97	84.314	Gadus_morhua
ENSPTIG00000012704	-	82	94.118	ENSGALG00000039803	LSM12	100	94.118	Gallus_gallus
ENSPTIG00000012704	-	82	84.314	ENSGAFG00000011829	lsm12b	78	84.314	Gambusia_affinis
ENSPTIG00000012704	-	82	84.967	ENSGACG00000003428	lsm12b	97	84.967	Gasterosteus_aculeatus
ENSPTIG00000012704	-	82	94.118	ENSGAGG00000021965	LSM12	79	94.118	Gopherus_agassizii
ENSPTIG00000012704	-	82	100.000	ENSGGOG00000010589	-	81	98.198	Gorilla_gorilla
ENSPTIG00000012704	-	82	84.967	ENSHBUG00000007667	lsm12b	68	84.967	Haplochromis_burtoni
ENSPTIG00000012704	-	82	100.000	ENSHGLG00000011411	LSM12	81	98.198	Heterocephalus_glaber_female
ENSPTIG00000012704	-	82	100.000	ENSHGLG00100000241	LSM12	81	100.000	Heterocephalus_glaber_male
ENSPTIG00000012704	-	82	83.660	ENSHCOG00000002094	lsm12b	78	83.660	Hippocampus_comes
ENSPTIG00000012704	-	81	74.834	ENSIPUG00000008936	lsm12a	77	74.834	Ictalurus_punctatus
ENSPTIG00000012704	-	82	85.621	ENSIPUG00000014800	lsm12	78	85.621	Ictalurus_punctatus
ENSPTIG00000012704	-	82	100.000	ENSSTOG00000007403	LSM12	81	98.198	Ictidomys_tridecemlineatus
ENSPTIG00000012704	-	82	98.693	ENSJJAG00000004364	-	81	97.297	Jaculus_jaculus
ENSPTIG00000012704	-	82	87.662	ENSJJAG00000011793	-	80	87.662	Jaculus_jaculus
ENSPTIG00000012704	-	66	86.290	ENSJJAG00000014652	-	73	86.290	Jaculus_jaculus
ENSPTIG00000012704	-	82	85.621	ENSLBEG00000027999	lsm12b	78	85.621	Labrus_bergylta
ENSPTIG00000012704	-	81	91.447	ENSLACG00000015981	LSM12	78	91.447	Latimeria_chalumnae
ENSPTIG00000012704	-	82	83.660	ENSLOCG00000013079	lsm12b	78	83.660	Lepisosteus_oculatus
ENSPTIG00000012704	-	82	100.000	ENSLAFG00000005202	LSM12	78	100.000	Loxodonta_africana
ENSPTIG00000012704	-	82	100.000	ENSMFAG00000031376	LSM12	81	98.198	Macaca_fascicularis
ENSPTIG00000012704	-	82	100.000	ENSMMUG00000006804	LSM12	81	98.198	Macaca_mulatta
ENSPTIG00000012704	-	82	100.000	ENSMNEG00000030594	-	81	98.198	Macaca_nemestrina
ENSPTIG00000012704	-	82	100.000	ENSMLEG00000039934	LSM12	81	98.198	Mandrillus_leucophaeus
ENSPTIG00000012704	-	82	84.967	ENSMAMG00000004279	lsm12b	78	84.967	Mastacembelus_armatus
ENSPTIG00000012704	-	82	84.967	ENSMZEG00005005754	lsm12b	78	84.967	Maylandia_zebra
ENSPTIG00000012704	-	82	99.346	ENSMICG00000037219	LSM12	81	97.297	Microcebus_murinus
ENSPTIG00000012704	-	82	100.000	ENSMOCG00000019878	-	81	98.198	Microtus_ochrogaster
ENSPTIG00000012704	-	82	81.699	ENSMOCG00000017015	-	67	81.699	Microtus_ochrogaster
ENSPTIG00000012704	-	82	84.967	ENSMMOG00000020848	lsm12b	78	84.967	Mola_mola
ENSPTIG00000012704	-	82	85.621	ENSMALG00000007578	lsm12b	78	85.621	Monopterus_albus
ENSPTIG00000012704	-	82	99.346	MGP_CAROLIEiJ_G0017241	Lsm12	81	97.297	Mus_caroli
ENSPTIG00000012704	-	82	100.000	ENSMUSG00000020922	Lsm12	81	98.198	Mus_musculus
ENSPTIG00000012704	-	82	90.000	MGP_PahariEiJ_G0018371	Lsm12	81	98.198	Mus_pahari
ENSPTIG00000012704	-	82	99.346	MGP_SPRETEiJ_G0018084	Lsm12	79	100.000	Mus_spretus
ENSPTIG00000012704	-	82	99.346	ENSMLUG00000006391	LSM12	78	99.346	Myotis_lucifugus
ENSPTIG00000012704	-	82	100.000	ENSNGAG00000001870	Lsm12	81	98.198	Nannospalax_galili
ENSPTIG00000012704	-	81	74.172	ENSNGAG00000015429	-	77	74.172	Nannospalax_galili
ENSPTIG00000012704	-	82	84.967	ENSNBRG00000006266	lsm12b	78	84.967	Neolamprologus_brichardi
ENSPTIG00000012704	-	82	100.000	ENSNLEG00000005580	-	81	98.198	Nomascus_leucogenys
ENSPTIG00000012704	-	66	97.561	ENSMEUG00000007501	-	75	97.561	Notamacropus_eugenii
ENSPTIG00000012704	-	82	100.000	ENSOPRG00000008552	LSM12	78	100.000	Ochotona_princeps
ENSPTIG00000012704	-	82	88.235	ENSODEG00000007886	-	59	88.235	Octodon_degus
ENSPTIG00000012704	-	82	98.693	ENSODEG00000017998	-	81	96.396	Octodon_degus
ENSPTIG00000012704	-	82	84.967	ENSONIG00000007933	lsm12b	78	84.967	Oreochromis_niloticus
ENSPTIG00000012704	-	81	93.421	ENSOCUG00000021254	-	78	93.421	Oryctolagus_cuniculus
ENSPTIG00000012704	-	82	100.000	ENSOCUG00000008566	-	77	100.000	Oryctolagus_cuniculus
ENSPTIG00000012704	-	81	92.105	ENSOCUG00000024823	-	78	92.105	Oryctolagus_cuniculus
ENSPTIG00000012704	-	81	94.737	ENSOCUG00000027889	-	78	94.737	Oryctolagus_cuniculus
ENSPTIG00000012704	-	82	84.967	ENSORLG00000011310	lsm12b	78	84.967	Oryzias_latipes
ENSPTIG00000012704	-	82	84.967	ENSORLG00020002060	lsm12b	72	84.967	Oryzias_latipes_hni
ENSPTIG00000012704	-	82	84.967	ENSORLG00015001647	lsm12b	72	84.967	Oryzias_latipes_hsok
ENSPTIG00000012704	-	82	84.967	ENSOMEG00000006184	lsm12b	71	84.967	Oryzias_melastigma
ENSPTIG00000012704	-	82	99.346	ENSOGAG00000010489	LSM12	78	99.346	Otolemur_garnettii
ENSPTIG00000012704	-	82	100.000	ENSOARG00000006589	LSM12	76	100.000	Ovis_aries
ENSPTIG00000012704	-	82	100.000	ENSPPAG00000034974	-	83	100.000	Pan_paniscus
ENSPTIG00000012704	-	82	100.000	ENSPPRG00000023420	LSM12	78	100.000	Panthera_pardus
ENSPTIG00000012704	-	82	100.000	ENSPTRG00000009261	LSM12	81	98.198	Pan_troglodytes
ENSPTIG00000012704	-	82	100.000	ENSPANG00000021315	-	81	98.198	Papio_anubis
ENSPTIG00000012704	-	82	85.621	ENSPKIG00000021058	lsm12b	78	85.621	Paramormyrops_kingsleyae
ENSPTIG00000012704	-	82	75.817	ENSPKIG00000017932	-	78	75.817	Paramormyrops_kingsleyae
ENSPTIG00000012704	-	82	84.967	ENSPMGG00000021344	lsm12b	78	84.967	Periophthalmus_magnuspinnatus
ENSPTIG00000012704	-	82	100.000	ENSPEMG00000012199	Lsm12	81	98.198	Peromyscus_maniculatus_bairdii
ENSPTIG00000012704	-	71	65.909	ENSPMAG00000005461	lsm12a	76	65.909	Petromyzon_marinus
ENSPTIG00000012704	-	82	96.078	ENSPCIG00000020244	LSM12	78	96.078	Phascolarctos_cinereus
ENSPTIG00000012704	-	82	83.007	ENSPFOG00000015930	lsm12b	78	83.007	Poecilia_formosa
ENSPTIG00000012704	-	82	83.007	ENSPLAG00000021089	lsm12b	78	83.007	Poecilia_latipinna
ENSPTIG00000012704	-	82	83.007	ENSPMEG00000012961	lsm12b	78	83.007	Poecilia_mexicana
ENSPTIG00000012704	-	82	84.314	ENSPREG00000010236	lsm12b	85	84.314	Poecilia_reticulata
ENSPTIG00000012704	-	82	100.000	ENSPPYG00000008344	LSM12	78	100.000	Pongo_abelii
ENSPTIG00000012704	-	66	100.000	ENSPCAG00000008790	LSM12	77	100.000	Procavia_capensis
ENSPTIG00000012704	-	82	100.000	ENSPCOG00000027951	LSM12	81	98.198	Propithecus_coquereli
ENSPTIG00000012704	-	82	99.346	ENSPVAG00000013706	LSM12	78	99.346	Pteropus_vampyrus
ENSPTIG00000012704	-	82	84.967	ENSPNYG00000003386	lsm12b	78	84.967	Pundamilia_nyererei
ENSPTIG00000012704	-	82	78.431	ENSPNAG00000018435	lsm12a	78	78.431	Pygocentrus_nattereri
ENSPTIG00000012704	-	82	83.007	ENSPNAG00000004186	lsm12b	78	83.007	Pygocentrus_nattereri
ENSPTIG00000012704	-	82	100.000	ENSRNOG00000020894	Lsm12	78	100.000	Rattus_norvegicus
ENSPTIG00000012704	-	82	100.000	ENSRBIG00000027910	LSM12	81	98.198	Rhinopithecus_bieti
ENSPTIG00000012704	-	82	100.000	ENSRROG00000045530	-	81	98.198	Rhinopithecus_roxellana
ENSPTIG00000012704	-	62	82.759	ENSRROG00000000537	-	80	82.759	Rhinopithecus_roxellana
ENSPTIG00000012704	-	63	32.061	YHR121W	-	68	32.061	Saccharomyces_cerevisiae
ENSPTIG00000012704	-	82	100.000	ENSSBOG00000025310	LSM12	81	98.198	Saimiri_boliviensis_boliviensis
ENSPTIG00000012704	-	82	96.078	ENSSHAG00000014914	LSM12	97	96.078	Sarcophilus_harrisii
ENSPTIG00000012704	-	82	86.928	ENSSFOG00015009612	lsm12	78	86.928	Scleropages_formosus
ENSPTIG00000012704	-	82	83.007	ENSSFOG00015020392	lsm12a	78	83.007	Scleropages_formosus
ENSPTIG00000012704	-	82	85.621	ENSSMAG00000008089	lsm12b	78	85.621	Scophthalmus_maximus
ENSPTIG00000012704	-	82	86.275	ENSSDUG00000012711	lsm12b	78	86.275	Seriola_dumerili
ENSPTIG00000012704	-	82	86.275	ENSSLDG00000007404	lsm12b	78	86.275	Seriola_lalandi_dorsalis
ENSPTIG00000012704	-	82	99.346	ENSSARG00000005537	LSM12	100	99.346	Sorex_araneus
ENSPTIG00000012704	-	82	94.771	ENSSPUG00000011984	LSM12	79	94.771	Sphenodon_punctatus
ENSPTIG00000012704	-	82	85.621	ENSSPAG00000017058	lsm12b	78	85.621	Stegastes_partitus
ENSPTIG00000012704	-	82	100.000	ENSSSCG00000032394	LSM12	78	100.000	Sus_scrofa
ENSPTIG00000012704	-	82	83.660	ENSTRUG00000007121	lsm12b	78	83.660	Takifugu_rubripes
ENSPTIG00000012704	-	82	84.314	ENSTNIG00000014436	lsm12b	78	84.314	Tetraodon_nigroviridis
ENSPTIG00000012704	-	82	95.425	ENSTBEG00000012392	-	78	95.425	Tupaia_belangeri
ENSPTIG00000012704	-	82	99.346	ENSTBEG00000012523	-	78	99.346	Tupaia_belangeri
ENSPTIG00000012704	-	82	100.000	ENSTTRG00000010433	LSM12	78	100.000	Tursiops_truncatus
ENSPTIG00000012704	-	82	100.000	ENSUAMG00000006313	LSM12	95	100.000	Ursus_americanus
ENSPTIG00000012704	-	82	100.000	ENSUMAG00000012987	LSM12	87	100.000	Ursus_maritimus
ENSPTIG00000012704	-	82	92.810	ENSVPAG00000011145	LSM12	78	92.810	Vicugna_pacos
ENSPTIG00000012704	-	82	100.000	ENSVVUG00000017581	LSM12	78	100.000	Vulpes_vulpes
ENSPTIG00000012704	-	78	65.753	ENSXETG00000003371	lsm12	72	65.753	Xenopus_tropicalis
ENSPTIG00000012704	-	82	84.314	ENSXCOG00000003994	lsm12b	78	84.314	Xiphophorus_couchianus
ENSPTIG00000012704	-	82	84.314	ENSXMAG00000020950	lsm12b	78	84.314	Xiphophorus_maculatus