EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTIG00000015511 (Gene tree)
Gene ID: 102969703
Gene Symbol: -
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Minus strand
Length: 20631 bases
Position: chrKE721637.1:103213-123843
Accession: 102969703
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000016935	Smg4_UPF3	PF03467.15	8.3e-52	1	1
ENSPTIP00000016939	Smg4_UPF3	PF03467.15	6.7e-29	1	2
ENSPTIP00000016939	Smg4_UPF3	PF03467.15	6.7e-29	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000021119	-	1332	XM_015544391	ENSPTIP00000016935	443 (aa)	XP_015399877	-
ENSPTIT00000021124	-	1233	-	ENSPTIP00000016939	410 (aa)	-	-

Gene Model

Click here to download ENSPTIG00000015511's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptg03013	RNA transport	KEGG
ptg03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000015511's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTIG00000015511	-	59	54.887	ENSPTIG00000015264	UPF3B	91	45.516

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000015511	-	96	67.506	ENSMAUG00000017013	-	100	67.506	Mesocricetus_auratus
ENSPTIG00000015511	-	95	64.138	ENSPCOG00000000918	-	92	64.138	Propithecus_coquereli