EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTIG00000016252 (Gene tree)
Gene ID: -
Gene Symbol: LSM7
Alias: -
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Plus strand
Length: 5684 bases
Position: chrKE721636.1:3596945-3602628
Accession: 20470
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000017992	LSM	PF01423.22	2.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000022236	LSM7-201	312	-	ENSPTIP00000017992	103 (aa)	-	-

Gene Model

Click here to download ENSPTIG00000016252's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000016252's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTIG00000016252	LSM7	72	35.526	ENSPTIG00000004722	LSM8	93	35.616
ENSPTIG00000016252	LSM7	69	39.437	ENSPTIG00000002303	-	83	36.620
ENSPTIG00000016252	LSM7	69	38.028	ENSPTIG00000016786	-	83	38.028
ENSPTIG00000016252	LSM7	69	33.803	ENSPTIG00000003291	-	83	33.803

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000016252	LSM7	98	99.010	ENSG00000130332	LSM7	100	100.000	Homo_sapiens
ENSPTIG00000016252	LSM7	91	94.681	ENSAPOG00000015573	lsm7	81	94.681	Acanthochromis_polyacanthus
ENSPTIG00000016252	LSM7	98	100.000	ENSAMEG00000005484	LSM7	98	100.000	Ailuropoda_melanoleuca
ENSPTIG00000016252	LSM7	94	93.814	ENSACIG00000006498	lsm7	71	94.382	Amphilophus_citrinellus
ENSPTIG00000016252	LSM7	98	94.059	ENSAOCG00000001077	lsm7	92	94.059	Amphiprion_ocellaris
ENSPTIG00000016252	LSM7	98	94.059	ENSAPEG00000000694	lsm7	98	94.059	Amphiprion_percula
ENSPTIG00000016252	LSM7	98	94.059	ENSAPEG00000024447	lsm7	92	94.059	Amphiprion_percula
ENSPTIG00000016252	LSM7	98	94.059	ENSATEG00000008557	lsm7	98	94.059	Anabas_testudineus
ENSPTIG00000016252	LSM7	98	91.089	ENSANAG00000022222	-	98	91.089	Aotus_nancymaae
ENSPTIG00000016252	LSM7	98	99.010	ENSANAG00000037196	-	98	99.010	Aotus_nancymaae
ENSPTIG00000016252	LSM7	98	93.069	ENSACLG00000021021	lsm7	90	93.548	Astatotilapia_calliptera
ENSPTIG00000016252	LSM7	98	94.059	ENSAMXG00000037622	lsm7	98	94.059	Astyanax_mexicanus
ENSPTIG00000016252	LSM7	98	99.010	ENSBTAG00000004521	LSM7	98	99.010	Bos_taurus
ENSPTIG00000016252	LSM7	97	57.000	WBGene00003081	lsm-7	88	56.522	Caenorhabditis_elegans
ENSPTIG00000016252	LSM7	52	98.148	ENSCJAG00000039713	-	66	98.148	Callithrix_jacchus
ENSPTIG00000016252	LSM7	98	100.000	ENSCAFG00000019409	LSM7	98	100.000	Canis_familiaris
ENSPTIG00000016252	LSM7	98	100.000	ENSCAFG00020018168	LSM7	74	100.000	Canis_lupus_dingo
ENSPTIG00000016252	LSM7	98	99.010	ENSCHIG00000023663	LSM7	98	99.010	Capra_hircus
ENSPTIG00000016252	LSM7	69	98.592	ENSCAPG00000014534	LSM7	100	98.592	Cavia_aperea
ENSPTIG00000016252	LSM7	98	99.010	ENSCPOG00000014025	LSM7	100	99.010	Cavia_porcellus
ENSPTIG00000016252	LSM7	98	99.010	ENSCCAG00000035456	LSM7	99	99.010	Cebus_capucinus
ENSPTIG00000016252	LSM7	98	99.010	ENSCATG00000023543	LSM7	98	99.010	Cercocebus_atys
ENSPTIG00000016252	LSM7	98	99.010	ENSCLAG00000011635	LSM7	98	99.010	Chinchilla_lanigera
ENSPTIG00000016252	LSM7	98	99.010	ENSCSAG00000011599	LSM7	98	99.010	Chlorocebus_sabaeus
ENSPTIG00000016252	LSM7	70	93.056	ENSCPBG00000021317	LSM7	77	93.056	Chrysemys_picta_bellii
ENSPTIG00000016252	LSM7	93	80.208	ENSCING00000022134	-	91	81.111	Ciona_intestinalis
ENSPTIG00000016252	LSM7	98	99.010	ENSCANG00000035525	LSM7	98	99.010	Colobus_angolensis_palliatus
ENSPTIG00000016252	LSM7	87	87.778	ENSCGRG00001016005	-	92	87.778	Cricetulus_griseus_chok1gshd
ENSPTIG00000016252	LSM7	98	98.020	ENSCGRG00001000807	-	98	98.020	Cricetulus_griseus_chok1gshd
ENSPTIG00000016252	LSM7	98	98.020	ENSCGRG00000014355	-	97	98.020	Cricetulus_griseus_crigri
ENSPTIG00000016252	LSM7	87	87.778	ENSCGRG00000006821	-	92	87.778	Cricetulus_griseus_crigri
ENSPTIG00000016252	LSM7	98	94.059	ENSCSEG00000014900	lsm7	84	94.059	Cynoglossus_semilaevis
ENSPTIG00000016252	LSM7	98	95.050	ENSCVAG00000021091	lsm7	94	95.050	Cyprinodon_variegatus
ENSPTIG00000016252	LSM7	98	94.059	ENSDARG00000058328	lsm7	90	94.624	Danio_rerio
ENSPTIG00000016252	LSM7	98	99.010	ENSDORG00000024460	Lsm7	99	99.010	Dipodomys_ordii
ENSPTIG00000016252	LSM7	94	77.551	FBgn0261068	LSm7	83	78.022	Drosophila_melanogaster
ENSPTIG00000016252	LSM7	98	96.040	ENSETEG00000012788	LSM7	99	96.040	Echinops_telfairi
ENSPTIG00000016252	LSM7	98	84.158	ENSEBUG00000016992	lsm7	89	86.022	Eptatretus_burgeri
ENSPTIG00000016252	LSM7	81	57.831	ENSEBUG00000010470	-	79	57.831	Eptatretus_burgeri
ENSPTIG00000016252	LSM7	98	95.050	ENSECAG00000001440	LSM7	65	95.050	Equus_caballus
ENSPTIG00000016252	LSM7	98	100.000	ENSFCAG00000003445	LSM7	98	100.000	Felis_catus
ENSPTIG00000016252	LSM7	98	96.040	ENSFALG00000011912	LSM7	100	96.040	Ficedula_albicollis
ENSPTIG00000016252	LSM7	93	98.958	ENSFDAG00000007661	LSM7	100	98.958	Fukomys_damarensis
ENSPTIG00000016252	LSM7	89	94.565	ENSFHEG00000006349	lsm7	90	95.050	Fundulus_heteroclitus
ENSPTIG00000016252	LSM7	98	92.079	ENSGMOG00000013320	lsm7	98	92.079	Gadus_morhua
ENSPTIG00000016252	LSM7	98	95.050	ENSGAFG00000013902	lsm7	98	95.050	Gambusia_affinis
ENSPTIG00000016252	LSM7	98	93.069	ENSGACG00000010390	lsm7	98	93.069	Gasterosteus_aculeatus
ENSPTIG00000016252	LSM7	98	99.010	ENSGGOG00000010172	LSM7	98	99.010	Gorilla_gorilla
ENSPTIG00000016252	LSM7	98	93.069	ENSHBUG00000004616	lsm7	90	93.548	Haplochromis_burtoni
ENSPTIG00000016252	LSM7	98	99.010	ENSHGLG00000010587	LSM7	98	99.010	Heterocephalus_glaber_female
ENSPTIG00000016252	LSM7	98	99.010	ENSHGLG00100000852	LSM7	98	99.010	Heterocephalus_glaber_male
ENSPTIG00000016252	LSM7	98	93.069	ENSHCOG00000020252	lsm7	92	93.548	Hippocampus_comes
ENSPTIG00000016252	LSM7	98	94.059	ENSIPUG00000024724	lsm7	98	94.059	Ictalurus_punctatus
ENSPTIG00000016252	LSM7	98	99.010	ENSSTOG00000028372	LSM7	99	99.010	Ictidomys_tridecemlineatus
ENSPTIG00000016252	LSM7	98	97.030	ENSJJAG00000001936	Lsm7	98	97.030	Jaculus_jaculus
ENSPTIG00000016252	LSM7	98	95.050	ENSKMAG00000022151	lsm7	98	95.050	Kryptolebias_marmoratus
ENSPTIG00000016252	LSM7	98	94.059	ENSLBEG00000005203	lsm7	98	94.059	Labrus_bergylta
ENSPTIG00000016252	LSM7	98	98.020	ENSLACG00000015700	LSM7	98	98.020	Latimeria_chalumnae
ENSPTIG00000016252	LSM7	98	97.030	ENSLOCG00000004356	lsm7	98	97.030	Lepisosteus_oculatus
ENSPTIG00000016252	LSM7	98	99.010	ENSLAFG00000029302	LSM7	98	99.010	Loxodonta_africana
ENSPTIG00000016252	LSM7	98	99.010	ENSMFAG00000044572	LSM7	98	99.010	Macaca_fascicularis
ENSPTIG00000016252	LSM7	98	99.010	ENSMMUG00000000452	LSM7	99	99.010	Macaca_mulatta
ENSPTIG00000016252	LSM7	98	99.010	ENSMNEG00000004393	LSM7	98	99.010	Macaca_nemestrina
ENSPTIG00000016252	LSM7	98	99.010	ENSMLEG00000030852	LSM7	100	99.010	Mandrillus_leucophaeus
ENSPTIG00000016252	LSM7	98	93.069	ENSMAMG00000005410	lsm7	90	93.548	Mastacembelus_armatus
ENSPTIG00000016252	LSM7	98	93.069	ENSMZEG00005028055	lsm7	90	93.548	Maylandia_zebra
ENSPTIG00000016252	LSM7	98	97.030	ENSMGAG00000000750	LSM7	87	97.030	Meleagris_gallopavo
ENSPTIG00000016252	LSM7	98	98.020	ENSMAUG00000009276	Lsm7	98	98.020	Mesocricetus_auratus
ENSPTIG00000016252	LSM7	98	99.010	ENSMICG00000028619	-	98	99.010	Microcebus_murinus
ENSPTIG00000016252	LSM7	98	99.010	ENSMICG00000009988	-	98	99.010	Microcebus_murinus
ENSPTIG00000016252	LSM7	98	98.020	ENSMOCG00000016925	Lsm7	98	98.020	Microtus_ochrogaster
ENSPTIG00000016252	LSM7	98	94.059	ENSMMOG00000019645	lsm7	96	94.059	Mola_mola
ENSPTIG00000016252	LSM7	98	98.020	ENSMODG00000004722	LSM7	98	98.020	Monodelphis_domestica
ENSPTIG00000016252	LSM7	98	93.069	ENSMALG00000014511	lsm7	72	93.548	Monopterus_albus
ENSPTIG00000016252	LSM7	98	97.030	MGP_CAROLIEiJ_G0015607	Lsm7	98	97.030	Mus_caroli
ENSPTIG00000016252	LSM7	98	97.030	ENSMUSG00000035215	Lsm7	98	97.030	Mus_musculus
ENSPTIG00000016252	LSM7	98	97.030	MGP_PahariEiJ_G0031020	Lsm7	98	97.030	Mus_pahari
ENSPTIG00000016252	LSM7	98	97.030	MGP_SPRETEiJ_G0016425	Lsm7	98	97.030	Mus_spretus
ENSPTIG00000016252	LSM7	98	98.020	ENSMLUG00000013097	-	98	98.020	Myotis_lucifugus
ENSPTIG00000016252	LSM7	98	91.089	ENSMLUG00000024002	-	86	91.398	Myotis_lucifugus
ENSPTIG00000016252	LSM7	98	97.030	ENSNGAG00000021637	Lsm7	98	97.030	Nannospalax_galili
ENSPTIG00000016252	LSM7	98	93.069	ENSNBRG00000015770	lsm7	80	93.548	Neolamprologus_brichardi
ENSPTIG00000016252	LSM7	91	93.617	ENSNBRG00000001237	-	74	93.548	Neolamprologus_brichardi
ENSPTIG00000016252	LSM7	98	99.010	ENSNLEG00000002265	LSM7	98	99.010	Nomascus_leucogenys
ENSPTIG00000016252	LSM7	98	78.218	ENSODEG00000008190	-	89	77.419	Octodon_degus
ENSPTIG00000016252	LSM7	98	92.079	ENSODEG00000018769	-	98	92.079	Octodon_degus
ENSPTIG00000016252	LSM7	98	99.010	ENSODEG00000013590	-	98	99.010	Octodon_degus
ENSPTIG00000016252	LSM7	98	93.069	ENSONIG00000001801	lsm7	80	93.548	Oreochromis_niloticus
ENSPTIG00000016252	LSM7	98	94.059	ENSORLG00000023951	lsm7	98	94.059	Oryzias_latipes
ENSPTIG00000016252	LSM7	98	94.059	ENSORLG00020022226	lsm7	98	94.059	Oryzias_latipes_hni
ENSPTIG00000016252	LSM7	98	94.059	ENSORLG00015020044	lsm7	94	94.059	Oryzias_latipes_hsok
ENSPTIG00000016252	LSM7	98	94.059	ENSOMEG00000012806	lsm7	98	94.059	Oryzias_melastigma
ENSPTIG00000016252	LSM7	98	97.030	ENSOGAG00000000144	-	99	97.030	Otolemur_garnettii
ENSPTIG00000016252	LSM7	98	87.129	ENSOGAG00000024373	-	91	87.097	Otolemur_garnettii
ENSPTIG00000016252	LSM7	98	99.010	ENSOARG00000014013	LSM7	98	99.010	Ovis_aries
ENSPTIG00000016252	LSM7	98	99.010	ENSPPAG00000026500	LSM7	98	99.010	Pan_paniscus
ENSPTIG00000016252	LSM7	98	100.000	ENSPPRG00000008624	LSM7	98	100.000	Panthera_pardus
ENSPTIG00000016252	LSM7	98	99.010	ENSPTRG00000010233	LSM7	98	99.010	Pan_troglodytes
ENSPTIG00000016252	LSM7	98	99.010	ENSPANG00000020668	LSM7	98	99.010	Papio_anubis
ENSPTIG00000016252	LSM7	98	96.040	ENSPKIG00000011325	lsm7	98	96.040	Paramormyrops_kingsleyae
ENSPTIG00000016252	LSM7	98	97.030	ENSPSIG00000017149	LSM7	89	97.030	Pelodiscus_sinensis
ENSPTIG00000016252	LSM7	98	94.059	ENSPMGG00000006498	lsm7	98	94.059	Periophthalmus_magnuspinnatus
ENSPTIG00000016252	LSM7	98	98.020	ENSPCIG00000030454	LSM7	99	98.020	Phascolarctos_cinereus
ENSPTIG00000016252	LSM7	98	94.059	ENSPFOG00000012467	lsm7	89	94.059	Poecilia_formosa
ENSPTIG00000016252	LSM7	98	94.059	ENSPLAG00000000252	lsm7	94	94.059	Poecilia_latipinna
ENSPTIG00000016252	LSM7	98	94.059	ENSPMEG00000000587	lsm7	94	94.059	Poecilia_mexicana
ENSPTIG00000016252	LSM7	76	74.684	ENSPREG00000016718	lsm7	63	74.684	Poecilia_reticulata
ENSPTIG00000016252	LSM7	71	95.890	ENSPPYG00000009348	-	50	95.890	Pongo_abelii
ENSPTIG00000016252	LSM7	98	99.010	ENSPCOG00000017177	LSM7	99	99.010	Propithecus_coquereli
ENSPTIG00000016252	LSM7	98	93.069	ENSPNYG00000006938	lsm7	90	93.548	Pundamilia_nyererei
ENSPTIG00000016252	LSM7	98	94.059	ENSPNAG00000010141	lsm7	99	94.059	Pygocentrus_nattereri
ENSPTIG00000016252	LSM7	98	97.030	ENSRNOG00000019552	Lsm7	98	97.030	Rattus_norvegicus
ENSPTIG00000016252	LSM7	98	99.010	ENSRBIG00000035978	LSM7	98	99.010	Rhinopithecus_bieti
ENSPTIG00000016252	LSM7	98	99.010	ENSRROG00000034044	LSM7	98	99.010	Rhinopithecus_roxellana
ENSPTIG00000016252	LSM7	86	48.913	YNL147W	-	75	48.837	Saccharomyces_cerevisiae
ENSPTIG00000016252	LSM7	98	99.010	ENSSBOG00000034899	LSM7	98	99.010	Saimiri_boliviensis_boliviensis
ENSPTIG00000016252	LSM7	98	94.059	ENSSFOG00015006728	lsm7	98	94.059	Scleropages_formosus
ENSPTIG00000016252	LSM7	98	94.059	ENSSMAG00000004195	lsm7	93	94.059	Scophthalmus_maximus
ENSPTIG00000016252	LSM7	98	94.059	ENSSDUG00000001863	lsm7	98	94.059	Seriola_dumerili
ENSPTIG00000016252	LSM7	98	94.059	ENSSLDG00000016339	lsm7	98	94.059	Seriola_lalandi_dorsalis
ENSPTIG00000016252	LSM7	98	94.059	ENSSPAG00000015221	lsm7	98	94.059	Stegastes_partitus
ENSPTIG00000016252	LSM7	98	99.010	ENSSSCG00000013463	LSM7	99	99.010	Sus_scrofa
ENSPTIG00000016252	LSM7	98	96.040	ENSTGUG00000000067	LSM7	100	96.040	Taeniopygia_guttata
ENSPTIG00000016252	LSM7	98	94.059	ENSTRUG00000022913	lsm7	98	94.059	Takifugu_rubripes
ENSPTIG00000016252	LSM7	98	94.059	ENSTNIG00000015525	lsm7	98	94.059	Tetraodon_nigroviridis
ENSPTIG00000016252	LSM7	68	87.143	ENSTBEG00000016602	LSM7	100	87.143	Tupaia_belangeri
ENSPTIG00000016252	LSM7	98	100.000	ENSUAMG00000000912	LSM7	84	100.000	Ursus_americanus
ENSPTIG00000016252	LSM7	98	100.000	ENSUMAG00000006556	LSM7	79	100.000	Ursus_maritimus
ENSPTIG00000016252	LSM7	69	100.000	ENSVVUG00000002640	LSM7	65	100.000	Vulpes_vulpes
ENSPTIG00000016252	LSM7	98	94.059	ENSXETG00000022166	lsm7	100	94.059	Xenopus_tropicalis
ENSPTIG00000016252	LSM7	98	95.050	ENSXCOG00000002572	lsm7	99	95.050	Xiphophorus_couchianus
ENSPTIG00000016252	LSM7	98	95.050	ENSXMAG00000018630	lsm7	98	95.050	Xiphophorus_maculatus