EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTIG00000016581 (Gene tree)
Gene ID: 102971396
Gene Symbol: R3HDM1
Alias: -
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Plus strand
Length: 148942 bases
Position: chrKE722360.1:7010879-7159820
Accession: 102971396
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000018516	R3H	PF01424.22	1.5e-11	1	1
ENSPTIP00000018527	R3H	PF01424.22	1.7e-11	1	1
ENSPTIP00000018506	R3H	PF01424.22	1.8e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000022802	R3HDM1-203	3132	XM_007098845	ENSPTIP00000018527	1043 (aa)	XP_007098907	-
ENSPTIT00000022791	R3HDM1-202	4321	XM_007098840	ENSPTIP00000018516	970 (aa)	XP_007098902	UPI00042BE80B
ENSPTIT00000022781	R3HDM1-201	4709	XM_007098835	ENSPTIP00000018506	1099 (aa)	XP_007098897	UPI00042BA5D0

Gene Model

Click here to download ENSPTIG00000016581's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000016581's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTIG00000016581	R3HDM1	99	48.943	ENSPTIG00000008752	R3HDM2	100	47.589
ENSPTIG00000016581	R3HDM1	67	51.751	ENSPTIG00000005697	ARPP21	88	52.156

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000016581	R3HDM1	100	94.661	ENSG00000048991	R3HDM1	100	94.559	Homo_sapiens
ENSPTIG00000016581	R3HDM1	88	63.200	ENSAPOG00000020850	r3hdm1	92	63.200	Acanthochromis_polyacanthus
ENSPTIG00000016581	R3HDM1	100	98.187	ENSAMEG00000014886	R3HDM1	100	98.187	Ailuropoda_melanoleuca
ENSPTIG00000016581	R3HDM1	87	57.843	ENSAOCG00000005192	r3hdm1	95	57.843	Amphiprion_ocellaris
ENSPTIG00000016581	R3HDM1	87	62.933	ENSAPEG00000016108	r3hdm1	95	62.933	Amphiprion_percula
ENSPTIG00000016581	R3HDM1	87	63.172	ENSATEG00000000232	r3hdm1	82	63.172	Anabas_testudineus
ENSPTIG00000016581	R3HDM1	100	79.710	ENSAPLG00000015231	R3HDM1	100	79.801	Anas_platyrhynchos
ENSPTIG00000016581	R3HDM1	100	77.018	ENSACAG00000001676	R3HDM1	100	77.719	Anolis_carolinensis
ENSPTIG00000016581	R3HDM1	100	94.928	ENSANAG00000035334	R3HDM1	100	94.837	Aotus_nancymaae
ENSPTIG00000016581	R3HDM1	87	62.205	ENSACLG00000027282	r3hdm1	94	62.205	Astatotilapia_calliptera
ENSPTIG00000016581	R3HDM1	60	40.688	ENSAMXG00000020587	arpp21	63	47.500	Astyanax_mexicanus
ENSPTIG00000016581	R3HDM1	100	55.035	ENSAMXG00000003536	r3hdm1	100	55.343	Astyanax_mexicanus
ENSPTIG00000016581	R3HDM1	88	79.747	ENSAMXG00000012861	R3HDM1	100	60.984	Astyanax_mexicanus
ENSPTIG00000016581	R3HDM1	100	94.590	ENSBTAG00000013302	R3HDM1	100	93.116	Bos_taurus
ENSPTIG00000016581	R3HDM1	100	94.918	ENSCJAG00000011718	R3HDM1	100	94.918	Callithrix_jacchus
ENSPTIG00000016581	R3HDM1	100	98.459	ENSCAFG00000005075	R3HDM1	100	98.459	Canis_familiaris
ENSPTIG00000016581	R3HDM1	100	98.368	ENSCAFG00020016119	R3HDM1	100	98.368	Canis_lupus_dingo
ENSPTIG00000016581	R3HDM1	100	95.905	ENSCHIG00000020851	R3HDM1	100	95.814	Capra_hircus
ENSPTIG00000016581	R3HDM1	100	89.279	ENSCPOG00000012784	R3HDM1	100	94.093	Cavia_porcellus
ENSPTIG00000016581	R3HDM1	100	94.747	ENSCCAG00000027199	R3HDM1	100	94.651	Cebus_capucinus
ENSPTIG00000016581	R3HDM1	100	94.288	ENSCATG00000023642	R3HDM1	100	94.148	Cercocebus_atys
ENSPTIG00000016581	R3HDM1	100	89.182	ENSCLAG00000007962	R3HDM1	100	95.267	Chinchilla_lanigera
ENSPTIG00000016581	R3HDM1	100	90.447	ENSCSAG00000016356	R3HDM1	100	91.205	Chlorocebus_sabaeus
ENSPTIG00000016581	R3HDM1	80	93.939	ENSCHOG00000013638	R3HDM1	91	84.478	Choloepus_hoffmanni
ENSPTIG00000016581	R3HDM1	91	91.144	ENSCPBG00000009645	R3HDM1	100	91.144	Chrysemys_picta_bellii
ENSPTIG00000016581	R3HDM1	100	94.112	ENSCANG00000034748	R3HDM1	100	93.949	Colobus_angolensis_palliatus
ENSPTIG00000016581	R3HDM1	99	88.791	ENSCGRG00001012357	R3hdm1	97	88.791	Cricetulus_griseus_chok1gshd
ENSPTIG00000016581	R3HDM1	99	91.455	ENSCGRG00000012080	R3hdm1	100	94.239	Cricetulus_griseus_crigri
ENSPTIG00000016581	R3HDM1	89	43.184	ENSCSEG00000008944	r3hdm1	82	64.918	Cynoglossus_semilaevis
ENSPTIG00000016581	R3HDM1	87	60.800	ENSCVAG00000007582	r3hdm1	91	60.800	Cyprinodon_variegatus
ENSPTIG00000016581	R3HDM1	100	93.279	ENSDNOG00000000771	R3HDM1	100	91.863	Dasypus_novemcinctus
ENSPTIG00000016581	R3HDM1	100	83.636	ENSETEG00000013606	R3HDM1	100	84.091	Echinops_telfairi
ENSPTIG00000016581	R3HDM1	54	53.016	ENSEBUG00000014746	arpp21	97	43.838	Eptatretus_burgeri
ENSPTIG00000016581	R3HDM1	100	99.171	ENSEASG00005007392	R3HDM1	100	97.270	Equus_asinus_asinus
ENSPTIG00000016581	R3HDM1	99	99.171	ENSECAG00000019114	R3HDM1	100	97.184	Equus_caballus
ENSPTIG00000016581	R3HDM1	91	88.192	ENSEEUG00000012589	R3HDM1	91	87.823	Erinaceus_europaeus
ENSPTIG00000016581	R3HDM1	92	52.249	ENSELUG00000014413	r3hdm1	87	77.978	Esox_lucius
ENSPTIG00000016581	R3HDM1	92	74.913	ENSELUG00000004909	R3HDM1	99	55.524	Esox_lucius
ENSPTIG00000016581	R3HDM1	100	100.000	ENSFCAG00000027113	R3HDM1	100	99.727	Felis_catus
ENSPTIG00000016581	R3HDM1	74	72.749	ENSFALG00000013731	R3HDM1	93	61.470	Ficedula_albicollis
ENSPTIG00000016581	R3HDM1	100	89.104	ENSFDAG00000016478	R3HDM1	100	95.679	Fukomys_damarensis
ENSPTIG00000016581	R3HDM1	87	56.863	ENSFHEG00000018713	r3hdm1	91	61.600	Fundulus_heteroclitus
ENSPTIG00000016581	R3HDM1	61	64.783	ENSGMOG00000006042	-	74	64.783	Gadus_morhua
ENSPTIG00000016581	R3HDM1	94	78.455	ENSGALG00000012246	R3HDM1	99	85.902	Gallus_gallus
ENSPTIG00000016581	R3HDM1	87	61.867	ENSGAFG00000006203	r3hdm1	95	61.867	Gambusia_affinis
ENSPTIG00000016581	R3HDM1	86	67.949	ENSGACG00000014925	r3hdm1	92	67.949	Gasterosteus_aculeatus
ENSPTIG00000016581	R3HDM1	99	83.380	ENSGAGG00000007840	R3HDM1	100	78.241	Gopherus_agassizii
ENSPTIG00000016581	R3HDM1	100	94.288	ENSGGOG00000008156	R3HDM1	100	94.148	Gorilla_gorilla
ENSPTIG00000016581	R3HDM1	100	89.506	ENSHGLG00000015718	R3HDM1	100	95.062	Heterocephalus_glaber_female
ENSPTIG00000016581	R3HDM1	100	69.391	ENSHGLG00100015374	-	100	69.573	Heterocephalus_glaber_male
ENSPTIG00000016581	R3HDM1	100	89.683	ENSHGLG00100003184	-	100	95.062	Heterocephalus_glaber_male
ENSPTIG00000016581	R3HDM1	87	59.030	ENSHCOG00000013366	r3hdm1	91	59.838	Hippocampus_comes
ENSPTIG00000016581	R3HDM1	89	68.923	ENSIPUG00000013629	r3hdm1	94	70.607	Ictalurus_punctatus
ENSPTIG00000016581	R3HDM1	52	37.367	ENSIPUG00000020552	arpp21	74	38.998	Ictalurus_punctatus
ENSPTIG00000016581	R3HDM1	87	68.901	ENSIPUG00000001676	R3HDM1	99	66.507	Ictalurus_punctatus
ENSPTIG00000016581	R3HDM1	100	94.651	ENSSTOG00000007572	R3HDM1	100	96.708	Ictidomys_tridecemlineatus
ENSPTIG00000016581	R3HDM1	94	85.806	ENSLACG00000005334	R3HDM1	100	71.520	Latimeria_chalumnae
ENSPTIG00000016581	R3HDM1	100	69.734	ENSLOCG00000001641	r3hdm1	100	66.399	Lepisosteus_oculatus
ENSPTIG00000016581	R3HDM1	100	92.247	ENSLAFG00000009065	R3HDM1	100	92.159	Loxodonta_africana
ENSPTIG00000016581	R3HDM1	100	94.470	ENSMFAG00000030331	R3HDM1	100	97.537	Macaca_fascicularis
ENSPTIG00000016581	R3HDM1	100	94.353	ENSMMUG00000009844	R3HDM1	100	94.251	Macaca_mulatta
ENSPTIG00000016581	R3HDM1	100	94.288	ENSMNEG00000027793	R3HDM1	100	97.537	Macaca_nemestrina
ENSPTIG00000016581	R3HDM1	100	94.560	ENSMLEG00000043189	R3HDM1	100	94.456	Mandrillus_leucophaeus
ENSPTIG00000016581	R3HDM1	87	62.198	ENSMAMG00000004532	r3hdm1	91	57.389	Mastacembelus_armatus
ENSPTIG00000016581	R3HDM1	87	62.205	ENSMZEG00005003157	r3hdm1	95	57.246	Maylandia_zebra
ENSPTIG00000016581	R3HDM1	100	79.057	ENSMGAG00000012461	R3HDM1	100	78.966	Meleagris_gallopavo
ENSPTIG00000016581	R3HDM1	100	88.421	ENSMAUG00000010315	R3hdm1	100	93.621	Mesocricetus_auratus
ENSPTIG00000016581	R3HDM1	100	93.937	ENSMICG00000005900	-	100	93.846	Microcebus_murinus
ENSPTIG00000016581	R3HDM1	95	92.432	ENSMICG00000042655	-	100	92.432	Microcebus_murinus
ENSPTIG00000016581	R3HDM1	90	78.742	ENSMODG00000000923	R3HDM1	97	78.646	Monodelphis_domestica
ENSPTIG00000016581	R3HDM1	99	57.816	ENSMALG00000009000	r3hdm1	91	57.816	Monopterus_albus
ENSPTIG00000016581	R3HDM1	100	88.194	MGP_CAROLIEiJ_G0014543	R3hdm1	100	94.561	Mus_caroli
ENSPTIG00000016581	R3HDM1	100	88.282	ENSMUSG00000056211	R3hdm1	100	94.561	Mus_musculus
ENSPTIG00000016581	R3HDM1	100	88.106	MGP_PahariEiJ_G0027779	R3hdm1	100	94.561	Mus_pahari
ENSPTIG00000016581	R3HDM1	100	88.458	MGP_SPRETEiJ_G0015350	R3hdm1	100	94.561	Mus_spretus
ENSPTIG00000016581	R3HDM1	100	98.183	ENSMPUG00000002412	R3HDM1	100	98.183	Mustela_putorius_furo
ENSPTIG00000016581	R3HDM1	100	95.027	ENSMLUG00000013824	R3HDM1	100	94.846	Myotis_lucifugus
ENSPTIG00000016581	R3HDM1	100	94.379	ENSNLEG00000008622	R3HDM1	100	94.251	Nomascus_leucogenys
ENSPTIG00000016581	R3HDM1	89	73.620	ENSMEUG00000011784	R3HDM1	99	73.517	Notamacropus_eugenii
ENSPTIG00000016581	R3HDM1	100	88.380	ENSODEG00000008607	R3HDM1	100	95.473	Octodon_degus
ENSPTIG00000016581	R3HDM1	94	66.563	ENSONIG00000012017	r3hdm1	91	66.563	Oreochromis_niloticus
ENSPTIG00000016581	R3HDM1	100	82.262	ENSOANG00000007987	R3HDM1	100	82.081	Ornithorhynchus_anatinus
ENSPTIG00000016581	R3HDM1	89	93.890	ENSOCUG00000017366	R3HDM1	98	93.686	Oryctolagus_cuniculus
ENSPTIG00000016581	R3HDM1	87	60.638	ENSORLG00000004297	r3hdm1	90	60.638	Oryzias_latipes
ENSPTIG00000016581	R3HDM1	89	61.067	ENSORLG00015017355	r3hdm1	91	61.067	Oryzias_latipes_hsok
ENSPTIG00000016581	R3HDM1	100	94.182	ENSOGAG00000003136	R3HDM1	100	94.182	Otolemur_garnettii
ENSPTIG00000016581	R3HDM1	100	95.632	ENSOARG00000010788	R3HDM1	100	95.541	Ovis_aries
ENSPTIG00000016581	R3HDM1	100	94.480	ENSPPAG00000027858	R3HDM1	100	94.365	Pan_paniscus
ENSPTIG00000016581	R3HDM1	100	99.636	ENSPPRG00000002626	R3HDM1	100	99.636	Panthera_pardus
ENSPTIG00000016581	R3HDM1	100	94.467	ENSPTRG00000012494	R3HDM1	100	94.365	Pan_troglodytes
ENSPTIG00000016581	R3HDM1	100	94.559	ENSPANG00000026448	R3HDM1	100	94.456	Papio_anubis
ENSPTIG00000016581	R3HDM1	94	76.358	ENSPKIG00000004328	r3hdm1	91	76.508	Paramormyrops_kingsleyae
ENSPTIG00000016581	R3HDM1	100	78.857	ENSPSIG00000012915	R3HDM1	100	78.766	Pelodiscus_sinensis
ENSPTIG00000016581	R3HDM1	100	88.987	ENSPEMG00000015187	R3hdm1	100	94.033	Peromyscus_maniculatus_bairdii
ENSPTIG00000016581	R3HDM1	90	54.960	ENSPMAG00000003369	-	98	43.418	Petromyzon_marinus
ENSPTIG00000016581	R3HDM1	100	91.209	ENSPCIG00000002491	R3HDM1	100	85.172	Phascolarctos_cinereus
ENSPTIG00000016581	R3HDM1	87	55.231	ENSPFOG00000015036	r3hdm1	94	55.231	Poecilia_formosa
ENSPTIG00000016581	R3HDM1	87	59.682	ENSPLAG00000018042	r3hdm1	91	59.682	Poecilia_latipinna
ENSPTIG00000016581	R3HDM1	87	59.682	ENSPMEG00000023947	r3hdm1	91	59.682	Poecilia_mexicana
ENSPTIG00000016581	R3HDM1	80	68.285	ENSPREG00000007902	r3hdm1	94	60.800	Poecilia_reticulata
ENSPTIG00000016581	R3HDM1	100	93.659	ENSPPYG00000012815	R3HDM1	100	93.569	Pongo_abelii
ENSPTIG00000016581	R3HDM1	100	82.985	ENSPCAG00000006208	R3HDM1	100	82.985	Procavia_capensis
ENSPTIG00000016581	R3HDM1	100	92.834	ENSPCOG00000012698	R3HDM1	100	92.834	Propithecus_coquereli
ENSPTIG00000016581	R3HDM1	100	86.968	ENSPVAG00000006098	R3HDM1	100	86.878	Pteropus_vampyrus
ENSPTIG00000016581	R3HDM1	88	76.603	ENSPNAG00000005436	R3HDM1	99	61.294	Pygocentrus_nattereri
ENSPTIG00000016581	R3HDM1	94	74.522	ENSPNAG00000013952	r3hdm1	89	74.603	Pygocentrus_nattereri
ENSPTIG00000016581	R3HDM1	66	38.649	ENSPNAG00000004162	arpp21	58	49.354	Pygocentrus_nattereri
ENSPTIG00000016581	R3HDM1	100	87.841	ENSRNOG00000004099	R3hdm1	100	87.820	Rattus_norvegicus
ENSPTIG00000016581	R3HDM1	100	93.484	ENSRBIG00000033317	R3HDM1	100	98.893	Rhinopithecus_bieti
ENSPTIG00000016581	R3HDM1	100	97.514	ENSRROG00000034534	R3HDM1	100	94.256	Rhinopithecus_roxellana
ENSPTIG00000016581	R3HDM1	100	94.470	ENSSBOG00000020389	R3HDM1	100	94.379	Saimiri_boliviensis_boliviensis
ENSPTIG00000016581	R3HDM1	100	91.209	ENSSHAG00000016999	R3HDM1	100	85.468	Sarcophilus_harrisii
ENSPTIG00000016581	R3HDM1	100	56.901	ENSSFOG00015019851	-	99	57.653	Scleropages_formosus
ENSPTIG00000016581	R3HDM1	100	72.283	ENSSFOG00015014134	r3hdm1	100	70.874	Scleropages_formosus
ENSPTIG00000016581	R3HDM1	99	60.270	ENSSMAG00000001669	r3hdm1	99	44.560	Scophthalmus_maximus
ENSPTIG00000016581	R3HDM1	87	62.500	ENSSDUG00000010749	r3hdm1	91	62.500	Seriola_dumerili
ENSPTIG00000016581	R3HDM1	92	68.910	ENSSLDG00000004499	r3hdm1	91	57.213	Seriola_lalandi_dorsalis
ENSPTIG00000016581	R3HDM1	69	84.385	ENSSARG00000000352	-	69	84.385	Sorex_araneus
ENSPTIG00000016581	R3HDM1	100	80.780	ENSSPUG00000004167	R3HDM1	100	80.508	Sphenodon_punctatus
ENSPTIG00000016581	R3HDM1	87	63.200	ENSSPAG00000004648	r3hdm1	91	63.200	Stegastes_partitus
ENSPTIG00000016581	R3HDM1	100	98.895	ENSSSCG00000015692	R3HDM1	100	96.821	Sus_scrofa
ENSPTIG00000016581	R3HDM1	100	75.123	ENSTGUG00000011750	R3HDM1	100	74.141	Taeniopygia_guttata
ENSPTIG00000016581	R3HDM1	87	58.808	ENSTRUG00000011654	r3hdm1	91	58.808	Takifugu_rubripes
ENSPTIG00000016581	R3HDM1	84	47.265	ENSTNIG00000010362	r3hdm1	95	47.190	Tetraodon_nigroviridis
ENSPTIG00000016581	R3HDM1	100	89.263	ENSTTRG00000003935	R3HDM1	100	89.263	Tursiops_truncatus
ENSPTIG00000016581	R3HDM1	70	98.452	ENSUAMG00000024806	R3HDM1	99	97.048	Ursus_americanus
ENSPTIG00000016581	R3HDM1	100	99.724	ENSUMAG00000005552	R3HDM1	100	97.222	Ursus_maritimus
ENSPTIG00000016581	R3HDM1	97	98.246	ENSVPAG00000007333	R3HDM1	93	98.246	Vicugna_pacos
ENSPTIG00000016581	R3HDM1	100	99.448	ENSVVUG00000006457	R3HDM1	100	95.507	Vulpes_vulpes
ENSPTIG00000016581	R3HDM1	89	67.778	ENSXETG00000019330	r3hdm1	100	67.475	Xenopus_tropicalis
ENSPTIG00000016581	R3HDM1	71	50.769	ENSXCOG00000017448	r3hdm1	94	49.872	Xiphophorus_couchianus
ENSPTIG00000016581	R3HDM1	87	61.600	ENSXMAG00000007885	r3hdm1	82	67.961	Xiphophorus_maculatus