EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTIG00000016917 (Gene tree)
Gene ID: 102956786
Gene Symbol: PSPC1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Plus strand
Length: 71334 bases
Position: chrKE721868.1:4495977-4567310
Accession: 102956786
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000018956	RRM_1	PF00076.22	1.2e-15	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000023249	PSPC1-201	1431	XM_015540093	ENSPTIP00000018956	476 (aa)	XP_015395579	-

Gene Model

Click here to download ENSPTIG00000016917's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000016917's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTIG00000016917	PSPC1	80	55.641	ENSPTIG00000007710	-	80	67.483
ENSPTIG00000016917	PSPC1	84	58.647	ENSPTIG00000016068	-	63	67.559

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000016917	PSPC1	100	83.556	ENSG00000121390	PSPC1	100	83.556	Homo_sapiens
ENSPTIG00000016917	PSPC1	84	69.639	ENSAPOG00000015946	pspc1	67	73.641	Acanthochromis_polyacanthus
ENSPTIG00000016917	PSPC1	100	83.877	ENSAMEG00000017420	PSPC1	100	83.877	Ailuropoda_melanoleuca
ENSPTIG00000016917	PSPC1	84	60.880	ENSACIG00000018695	pspc1	74	57.946	Amphilophus_citrinellus
ENSPTIG00000016917	PSPC1	84	69.065	ENSAOCG00000005279	pspc1	66	73.098	Amphiprion_ocellaris
ENSPTIG00000016917	PSPC1	84	70.343	ENSAPEG00000015927	pspc1	67	73.098	Amphiprion_percula
ENSPTIG00000016917	PSPC1	84	55.990	ENSATEG00000004878	pspc1	64	60.340	Anabas_testudineus
ENSPTIG00000016917	PSPC1	84	94.776	ENSAPLG00000006246	PSPC1	99	94.776	Anas_platyrhynchos
ENSPTIG00000016917	PSPC1	84	58.765	ENSAPLG00000003643	SFPQ	58	68.197	Anas_platyrhynchos
ENSPTIG00000016917	PSPC1	84	90.819	ENSACAG00000002093	PSPC1	76	91.067	Anolis_carolinensis
ENSPTIG00000016917	PSPC1	100	83.301	ENSANAG00000000059	PSPC1	100	83.301	Aotus_nancymaae
ENSPTIG00000016917	PSPC1	84	60.345	ENSACLG00000027220	pspc1	74	56.790	Astatotilapia_calliptera
ENSPTIG00000016917	PSPC1	84	67.464	ENSAMXG00000036881	pspc1	68	72.654	Astyanax_mexicanus
ENSPTIG00000016917	PSPC1	100	83.077	ENSBTAG00000003934	PSPC1	100	83.077	Bos_taurus
ENSPTIG00000016917	PSPC1	100	83.301	ENSCJAG00000004554	PSPC1	100	83.301	Callithrix_jacchus
ENSPTIG00000016917	PSPC1	100	83.877	ENSCAFG00020002009	PSPC1	100	83.877	Canis_lupus_dingo
ENSPTIG00000016917	PSPC1	100	83.077	ENSCHIG00000016708	PSPC1	100	83.077	Capra_hircus
ENSPTIG00000016917	PSPC1	95	82.969	ENSTSYG00000032882	PSPC1	99	80.525	Carlito_syrichta
ENSPTIG00000016917	PSPC1	100	82.692	ENSCPOG00000000395	PSPC1	100	82.692	Cavia_porcellus
ENSPTIG00000016917	PSPC1	100	83.301	ENSCCAG00000033498	PSPC1	100	83.301	Cebus_capucinus
ENSPTIG00000016917	PSPC1	100	83.365	ENSCATG00000036434	PSPC1	100	83.365	Cercocebus_atys
ENSPTIG00000016917	PSPC1	84	98.250	ENSCLAG00000005241	PSPC1	89	98.250	Chinchilla_lanigera
ENSPTIG00000016917	PSPC1	100	77.247	ENSCHOG00000008913	PSPC1	100	77.055	Choloepus_hoffmanni
ENSPTIG00000016917	PSPC1	84	94.250	ENSCPBG00000020859	PSPC1	76	94.250	Chrysemys_picta_bellii
ENSPTIG00000016917	PSPC1	95	80.266	ENSCANG00000018948	PSPC1	87	99.240	Colobus_angolensis_palliatus
ENSPTIG00000016917	PSPC1	100	82.375	ENSCGRG00001018368	Pspc1	100	82.375	Cricetulus_griseus_chok1gshd
ENSPTIG00000016917	PSPC1	100	82.375	ENSCGRG00000011724	Pspc1	100	82.375	Cricetulus_griseus_crigri
ENSPTIG00000016917	PSPC1	84	65.602	ENSCVAG00000007679	-	67	67.486	Cyprinodon_variegatus
ENSPTIG00000016917	PSPC1	84	70.976	ENSDARG00000006621	pspc1	99	67.397	Danio_rerio
ENSPTIG00000016917	PSPC1	100	82.218	ENSDNOG00000011078	PSPC1	100	82.218	Dasypus_novemcinctus
ENSPTIG00000016917	PSPC1	100	83.721	ENSDORG00000016050	Pspc1	100	83.721	Dipodomys_ordii
ENSPTIG00000016917	PSPC1	60	100.000	ENSETEG00000000502	-	72	100.000	Echinops_telfairi
ENSPTIG00000016917	PSPC1	86	56.492	ENSEBUG00000003964	-	54	70.333	Eptatretus_burgeri
ENSPTIG00000016917	PSPC1	100	83.815	ENSEASG00005000119	PSPC1	100	83.815	Equus_asinus_asinus
ENSPTIG00000016917	PSPC1	100	83.815	ENSECAG00000017286	PSPC1	100	83.815	Equus_caballus
ENSPTIG00000016917	PSPC1	87	64.423	ENSEEUG00000011288	-	88	64.103	Erinaceus_europaeus
ENSPTIG00000016917	PSPC1	84	70.803	ENSELUG00000003746	pspc1	63	83.142	Esox_lucius
ENSPTIG00000016917	PSPC1	100	84.069	ENSFCAG00000027841	PSPC1	100	84.069	Felis_catus
ENSPTIG00000016917	PSPC1	84	94.750	ENSFALG00000008750	PSPC1	76	94.750	Ficedula_albicollis
ENSPTIG00000016917	PSPC1	100	83.922	ENSFDAG00000002617	PSPC1	100	83.922	Fukomys_damarensis
ENSPTIG00000016917	PSPC1	84	65.099	ENSGMOG00000015074	pspc1	74	64.268	Gadus_morhua
ENSPTIG00000016917	PSPC1	84	94.750	ENSGALG00000017142	PSPC1	76	94.750	Gallus_gallus
ENSPTIG00000016917	PSPC1	55	79.545	ENSGAFG00000006327	pspc1	55	79.545	Gambusia_affinis
ENSPTIG00000016917	PSPC1	84	64.925	ENSGACG00000014901	pspc1	74	73.585	Gasterosteus_aculeatus
ENSPTIG00000016917	PSPC1	84	94.250	ENSGAGG00000019164	PSPC1	76	94.250	Gopherus_agassizii
ENSPTIG00000016917	PSPC1	100	83.365	ENSGGOG00000003414	PSPC1	100	83.365	Gorilla_gorilla
ENSPTIG00000016917	PSPC1	84	69.802	ENSHBUG00000001139	pspc1	75	69.307	Haplochromis_burtoni
ENSPTIG00000016917	PSPC1	100	82.692	ENSHGLG00000018811	PSPC1	100	82.692	Heterocephalus_glaber_female
ENSPTIG00000016917	PSPC1	64	79.205	ENSHGLG00100007962	PSPC1	100	79.205	Heterocephalus_glaber_male
ENSPTIG00000016917	PSPC1	73	63.014	ENSHCOG00000013251	pspc1	79	65.169	Hippocampus_comes
ENSPTIG00000016917	PSPC1	84	72.861	ENSIPUG00000013192	pspc1	76	72.372	Ictalurus_punctatus
ENSPTIG00000016917	PSPC1	100	82.409	ENSSTOG00000026833	PSPC1	100	82.409	Ictidomys_tridecemlineatus
ENSPTIG00000016917	PSPC1	100	82.375	ENSJJAG00000018334	Pspc1	100	82.375	Jaculus_jaculus
ENSPTIG00000016917	PSPC1	84	53.865	ENSKMAG00000013525	-	70	52.357	Kryptolebias_marmoratus
ENSPTIG00000016917	PSPC1	84	67.143	ENSLBEG00000004474	pspc1	64	73.088	Labrus_bergylta
ENSPTIG00000016917	PSPC1	84	85.500	ENSLACG00000010762	PSPC1	76	85.500	Latimeria_chalumnae
ENSPTIG00000016917	PSPC1	84	85.464	ENSLOCG00000010832	pspc1	99	71.937	Lepisosteus_oculatus
ENSPTIG00000016917	PSPC1	100	82.950	ENSLAFG00000010968	PSPC1	100	82.950	Loxodonta_africana
ENSPTIG00000016917	PSPC1	100	83.365	ENSMFAG00000032728	PSPC1	100	83.365	Macaca_fascicularis
ENSPTIG00000016917	PSPC1	100	83.365	ENSMMUG00000020262	PSPC1	100	83.365	Macaca_mulatta
ENSPTIG00000016917	PSPC1	100	83.365	ENSMNEG00000027401	PSPC1	100	83.365	Macaca_nemestrina
ENSPTIG00000016917	PSPC1	100	87.815	ENSMLEG00000039043	PSPC1	100	87.815	Mandrillus_leucophaeus
ENSPTIG00000016917	PSPC1	90	62.313	ENSMAMG00000004333	pspc1	74	66.019	Mastacembelus_armatus
ENSPTIG00000016917	PSPC1	84	60.345	ENSMZEG00005005726	pspc1	74	56.790	Maylandia_zebra
ENSPTIG00000016917	PSPC1	84	94.776	ENSMGAG00000015134	PSPC1	99	94.776	Meleagris_gallopavo
ENSPTIG00000016917	PSPC1	87	74.837	ENSMAUG00000021067	Pspc1	99	74.837	Mesocricetus_auratus
ENSPTIG00000016917	PSPC1	100	83.493	ENSMICG00000013970	PSPC1	100	83.493	Microcebus_murinus
ENSPTIG00000016917	PSPC1	100	82.375	ENSMOCG00000006060	Pspc1	100	82.375	Microtus_ochrogaster
ENSPTIG00000016917	PSPC1	92	80.412	ENSMODG00000008029	PSPC1	78	80.412	Monodelphis_domestica
ENSPTIG00000016917	PSPC1	84	69.554	ENSMALG00000008914	pspc1	75	66.749	Monopterus_albus
ENSPTIG00000016917	PSPC1	100	82.218	MGP_CAROLIEiJ_G0019341	Pspc1	100	82.218	Mus_caroli
ENSPTIG00000016917	PSPC1	100	82.409	ENSMUSG00000021938	Pspc1	100	82.409	Mus_musculus
ENSPTIG00000016917	PSPC1	100	82.218	MGP_PahariEiJ_G0030359	Pspc1	100	82.218	Mus_pahari
ENSPTIG00000016917	PSPC1	100	82.409	MGP_SPRETEiJ_G0020232	Pspc1	100	82.409	Mus_spretus
ENSPTIG00000016917	PSPC1	100	83.109	ENSMPUG00000013347	PSPC1	100	83.109	Mustela_putorius_furo
ENSPTIG00000016917	PSPC1	100	82.824	ENSMLUG00000017663	PSPC1	100	82.824	Myotis_lucifugus
ENSPTIG00000016917	PSPC1	100	82.184	ENSNGAG00000011271	Pspc1	100	82.184	Nannospalax_galili
ENSPTIG00000016917	PSPC1	55	72.624	ENSNBRG00000014059	pspc1	61	68.165	Neolamprologus_brichardi
ENSPTIG00000016917	PSPC1	100	83.365	ENSNLEG00000001294	PSPC1	100	83.365	Nomascus_leucogenys
ENSPTIG00000016917	PSPC1	83	75.135	ENSMEUG00000000476	PSPC1	84	73.514	Notamacropus_eugenii
ENSPTIG00000016917	PSPC1	100	71.785	ENSODEG00000019012	-	100	73.194	Octodon_degus
ENSPTIG00000016917	PSPC1	100	71.346	ENSODEG00000007817	-	100	68.061	Octodon_degus
ENSPTIG00000016917	PSPC1	84	70.050	ENSONIG00000012010	pspc1	75	68.537	Oreochromis_niloticus
ENSPTIG00000016917	PSPC1	99	60.396	ENSOANG00000011381	-	99	57.812	Ornithorhynchus_anatinus
ENSPTIG00000016917	PSPC1	84	97.744	ENSOANG00000009017	-	100	97.744	Ornithorhynchus_anatinus
ENSPTIG00000016917	PSPC1	100	82.409	ENSOCUG00000006153	PSPC1	100	82.409	Oryctolagus_cuniculus
ENSPTIG00000016917	PSPC1	84	70.098	ENSORLG00000004232	-	75	63.420	Oryzias_latipes
ENSPTIG00000016917	PSPC1	84	68.873	ENSORLG00020000578	PSPC1	75	64.819	Oryzias_latipes_hni
ENSPTIG00000016917	PSPC1	84	70.588	ENSORLG00015017480	pspc1	70	68.800	Oryzias_latipes_hsok
ENSPTIG00000016917	PSPC1	100	82.792	ENSOGAG00000012643	PSPC1	100	82.792	Otolemur_garnettii
ENSPTIG00000016917	PSPC1	100	86.815	ENSOARG00000014163	PSPC1	100	86.815	Ovis_aries
ENSPTIG00000016917	PSPC1	84	91.729	ENSPPAG00000009836	PSPC1	83	91.729	Pan_paniscus
ENSPTIG00000016917	PSPC1	100	84.069	ENSPPRG00000008833	PSPC1	100	84.069	Panthera_pardus
ENSPTIG00000016917	PSPC1	98	81.712	ENSPTRG00000005677	PSPC1	100	81.712	Pan_troglodytes
ENSPTIG00000016917	PSPC1	100	83.365	ENSPANG00000001992	PSPC1	100	83.365	Papio_anubis
ENSPTIG00000016917	PSPC1	76	78.512	ENSPKIG00000003578	pspc1	68	77.717	Paramormyrops_kingsleyae
ENSPTIG00000016917	PSPC1	84	94.500	ENSPSIG00000005168	PSPC1	76	94.500	Pelodiscus_sinensis
ENSPTIG00000016917	PSPC1	100	82.375	ENSPEMG00000015214	Pspc1	100	82.375	Peromyscus_maniculatus_bairdii
ENSPTIG00000016917	PSPC1	99	81.992	ENSPCIG00000017680	PSPC1	100	81.992	Phascolarctos_cinereus
ENSPTIG00000016917	PSPC1	90	63.797	ENSPFOG00000003362	pspc1	85	62.418	Poecilia_formosa
ENSPTIG00000016917	PSPC1	90	63.797	ENSPLAG00000011540	pspc1	84	62.418	Poecilia_latipinna
ENSPTIG00000016917	PSPC1	90	63.576	ENSPMEG00000008322	pspc1	84	62.198	Poecilia_mexicana
ENSPTIG00000016917	PSPC1	90	63.797	ENSPREG00000007786	pspc1	84	62.418	Poecilia_reticulata
ENSPTIG00000016917	PSPC1	100	82.726	ENSPPYG00000005186	PSPC1	100	82.726	Pongo_abelii
ENSPTIG00000016917	PSPC1	54	99.387	ENSPCAG00000008314	-	50	99.387	Procavia_capensis
ENSPTIG00000016917	PSPC1	100	78.394	ENSPCOG00000014364	PSPC1	100	78.394	Propithecus_coquereli
ENSPTIG00000016917	PSPC1	100	80.154	ENSPVAG00000005036	PSPC1	100	80.925	Pteropus_vampyrus
ENSPTIG00000016917	PSPC1	84	60.345	ENSPNYG00000008893	pspc1	74	56.790	Pundamilia_nyererei
ENSPTIG00000016917	PSPC1	84	71.638	ENSPNAG00000016511	pspc1	77	71.394	Pygocentrus_nattereri
ENSPTIG00000016917	PSPC1	100	82.184	ENSRNOG00000020782	Pspc1	100	82.184	Rattus_norvegicus
ENSPTIG00000016917	PSPC1	84	99.499	ENSRBIG00000036057	PSPC1	82	99.499	Rhinopithecus_bieti
ENSPTIG00000016917	PSPC1	100	82.792	ENSRROG00000036334	PSPC1	100	82.792	Rhinopithecus_roxellana
ENSPTIG00000016917	PSPC1	95	84.035	ENSSBOG00000028172	PSPC1	94	89.803	Saimiri_boliviensis_boliviensis
ENSPTIG00000016917	PSPC1	100	76.381	ENSSHAG00000004696	PSPC1	100	76.762	Sarcophilus_harrisii
ENSPTIG00000016917	PSPC1	76	79.890	ENSSFOG00015001395	pspc1	76	78.962	Scleropages_formosus
ENSPTIG00000016917	PSPC1	84	66.427	ENSSMAG00000001761	pspc1	67	78.067	Scophthalmus_maximus
ENSPTIG00000016917	PSPC1	84	68.445	ENSSDUG00000010651	pspc1	64	74.457	Seriola_dumerili
ENSPTIG00000016917	PSPC1	84	63.092	ENSSLDG00000004284	pspc1	68	60.108	Seriola_lalandi_dorsalis
ENSPTIG00000016917	PSPC1	100	76.493	ENSSARG00000000888	PSPC1	100	77.071	Sorex_araneus
ENSPTIG00000016917	PSPC1	84	78.803	ENSSPUG00000008550	PSPC1	75	79.052	Sphenodon_punctatus
ENSPTIG00000016917	PSPC1	84	68.085	ENSSPAG00000001921	pspc1	66	72.554	Stegastes_partitus
ENSPTIG00000016917	PSPC1	100	83.301	ENSSSCG00000009569	PSPC1	100	83.301	Sus_scrofa
ENSPTIG00000016917	PSPC1	84	94.750	ENSTGUG00000011295	PSPC1	86	94.750	Taeniopygia_guttata
ENSPTIG00000016917	PSPC1	84	62.836	ENSTRUG00000011335	pspc1	65	66.189	Takifugu_rubripes
ENSPTIG00000016917	PSPC1	84	64.851	ENSTNIG00000010358	pspc1	72	65.934	Tetraodon_nigroviridis
ENSPTIG00000016917	PSPC1	100	69.615	ENSTBEG00000002361	PSPC1	100	68.269	Tupaia_belangeri
ENSPTIG00000016917	PSPC1	100	83.622	ENSTTRG00000003343	PSPC1	100	83.622	Tursiops_truncatus
ENSPTIG00000016917	PSPC1	64	76.218	ENSUAMG00000012309	PSPC1	100	76.218	Ursus_americanus
ENSPTIG00000016917	PSPC1	84	99.248	ENSUMAG00000013993	PSPC1	82	99.248	Ursus_maritimus
ENSPTIG00000016917	PSPC1	84	98.997	ENSVPAG00000010029	PSPC1	100	98.997	Vicugna_pacos
ENSPTIG00000016917	PSPC1	100	83.877	ENSVVUG00000006414	PSPC1	100	83.877	Vulpes_vulpes
ENSPTIG00000016917	PSPC1	55	78.409	ENSXCOG00000017438	pspc1	62	78.409	Xiphophorus_couchianus
ENSPTIG00000016917	PSPC1	55	78.788	ENSXMAG00000007929	pspc1	62	78.788	Xiphophorus_maculatus