EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTIG00000018007 (Gene tree)
Gene ID: -
Gene Symbol: ZNF550
Alias: -
Full Name: zinc finger protein 550
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Plus strand
Length: 6550 bases
Position: chrKE721902.1:233081-239630
Accession: 28643
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000020575	zf-C2H2	PF00096.26	3.7e-24	1	4
ENSPTIP00000020575	zf-C2H2	PF00096.26	3.7e-24	2	4
ENSPTIP00000020575	zf-C2H2	PF00096.26	3.7e-24	3	4
ENSPTIP00000020575	zf-C2H2	PF00096.26	3.7e-24	4	4
ENSPTIP00000020572	zf-C2H2	PF00096.26	5.2e-24	1	4
ENSPTIP00000020572	zf-C2H2	PF00096.26	5.2e-24	2	4
ENSPTIP00000020572	zf-C2H2	PF00096.26	5.2e-24	3	4
ENSPTIP00000020572	zf-C2H2	PF00096.26	5.2e-24	4	4
ENSPTIP00000020575	zf-met	PF12874.7	1.2e-05	1	1
ENSPTIP00000020572	zf-met	PF12874.7	1.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000024923	ZNF550-202	1140	-	ENSPTIP00000020575	380 (aa)	-	-
ENSPTIT00000024920	ZNF550-201	1236	-	ENSPTIP00000020572	412 (aa)	-	-

Gene Model

Click here to download ENSPTIG00000018007's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000018007's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTIG00000018007	ZNF550	80	53.741	ENSPTIG00000009310	-	98	53.741
ENSPTIG00000018007	ZNF550	78	51.667	ENSPTIG00000009259	-	97	51.667
ENSPTIG00000018007	ZNF550	58	46.341	ENSPTIG00000011566	ZNF236	50	47.170
ENSPTIG00000018007	ZNF550	80	51.852	ENSPTIG00000019160	ZFP69B	85	51.852
ENSPTIG00000018007	ZNF550	80	52.212	ENSPTIG00000016461	ZNF317	89	52.212
ENSPTIG00000018007	ZNF550	80	53.061	ENSPTIG00000017612	ZNF81	97	53.061
ENSPTIG00000018007	ZNF550	80	54.348	ENSPTIG00000017831	ZNF226	98	54.348
ENSPTIG00000018007	ZNF550	80	54.286	ENSPTIG00000009843	ZFP1	98	54.286
ENSPTIG00000018007	ZNF550	80	55.000	ENSPTIG00000016395	-	96	55.000
ENSPTIG00000018007	ZNF550	60	63.636	ENSPTIG00000021573	ZNF235	75	63.636
ENSPTIG00000018007	ZNF550	54	44.286	ENSPTIG00000010807	PRDM5	62	44.286
ENSPTIG00000018007	ZNF550	62	53.741	ENSPTIG00000002831	ZNF112	80	53.741
ENSPTIG00000018007	ZNF550	80	54.688	ENSPTIG00000012277	-	99	54.688
ENSPTIG00000018007	ZNF550	78	49.324	ENSPTIG00000014852	ZNF234	99	49.286
ENSPTIG00000018007	ZNF550	69	41.880	ENSPTIG00000015051	-	54	41.880
ENSPTIG00000018007	ZNF550	50	55.000	ENSPTIG00000019806	ZSCAN22	55	55.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000018007	ZNF550	80	69.162	ENSG00000251369	ZNF550	100	69.868	Homo_sapiens
ENSPTIG00000018007	ZNF550	80	67.365	ENSCATG00000020915	ZNF550	100	67.550	Cercocebus_atys
ENSPTIG00000018007	ZNF550	71	57.860	ENSCLAG00000000250	ZNF550	95	57.860	Chinchilla_lanigera
ENSPTIG00000018007	ZNF550	80	66.766	ENSCSAG00000001629	ZNF550	100	66.766	Chlorocebus_sabaeus
ENSPTIG00000018007	ZNF550	80	67.665	ENSCANG00000033735	ZNF550	100	67.881	Colobus_angolensis_palliatus
ENSPTIG00000018007	ZNF550	68	60.232	ENSDNOG00000033330	-	99	59.783	Dasypus_novemcinctus
ENSPTIG00000018007	ZNF550	80	97.885	ENSFCAG00000034766	ZNF550	99	97.659	Felis_catus
ENSPTIG00000018007	ZNF550	80	68.862	ENSGGOG00000014068	ZNF550	100	69.536	Gorilla_gorilla
ENSPTIG00000018007	ZNF550	80	63.253	ENSHGLG00000018048	ZNF550	98	63.253	Heterocephalus_glaber_female
ENSPTIG00000018007	ZNF550	80	67.665	ENSMFAG00000036005	ZNF550	100	67.881	Macaca_fascicularis
ENSPTIG00000018007	ZNF550	80	67.066	ENSMMUG00000006122	ZNF550	100	67.550	Macaca_mulatta
ENSPTIG00000018007	ZNF550	80	67.665	ENSMNEG00000041366	ZNF550	100	67.881	Macaca_nemestrina
ENSPTIG00000018007	ZNF550	80	67.066	ENSMLEG00000034688	ZNF550	100	67.219	Mandrillus_leucophaeus
ENSPTIG00000018007	ZNF550	80	68.072	ENSMICG00000007561	ZNF550	100	68.000	Microcebus_murinus
ENSPTIG00000018007	ZNF550	80	99.094	ENSPPRG00000013475	ZNF550	99	98.997	Panthera_pardus
ENSPTIG00000018007	ZNF550	80	68.862	ENSPTRG00000011560	ZNF550	100	69.536	Pan_troglodytes
ENSPTIG00000018007	ZNF550	80	67.365	ENSPANG00000030602	ZNF550	100	67.550	Papio_anubis
ENSPTIG00000018007	ZNF550	80	68.976	ENSPCOG00000018751	ZNF550	100	69.000	Propithecus_coquereli
ENSPTIG00000018007	ZNF550	80	54.861	ENSPVAG00000000908	ZNF550	98	54.861	Pteropus_vampyrus
ENSPTIG00000018007	ZNF550	80	67.365	ENSRBIG00000017275	ZNF550	100	67.550	Rhinopithecus_bieti
ENSPTIG00000018007	ZNF550	80	67.365	ENSRROG00000040063	ZNF550	100	67.550	Rhinopithecus_roxellana
ENSPTIG00000018007	ZNF550	80	69.277	ENSTTRG00000000293	ZNF550	100	69.277	Tursiops_truncatus