EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTIG00000021081 (Gene tree)
Gene ID: 102948561
Gene Symbol: XRN1
Alias: -
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Plus strand
Length: 114928 bases
Position: chrKE721838.1:20870814-20985741
Accession: 102948561
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000025263	XRN_N	PF03159.18	6e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000029778	XRN1-201	5088	XM_007086338	ENSPTIP00000025263	1695 (aa)	XP_007086400	-

Gene Model

Click here to download ENSPTIG00000021081's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptg03008	Ribosome biogenesis in eukaryotes	KEGG
ptg03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000021081's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000021081	XRN1	100	93.392	ENSG00000114127	XRN1	100	98.788	Homo_sapiens
ENSPTIG00000021081	XRN1	95	73.393	ENSAPOG00000000622	xrn1	98	73.290	Acanthochromis_polyacanthus
ENSPTIG00000021081	XRN1	100	94.124	ENSAMEG00000012538	XRN1	100	94.124	Ailuropoda_melanoleuca
ENSPTIG00000021081	XRN1	95	72.912	ENSACIG00000001057	xrn1	96	72.868	Amphilophus_citrinellus
ENSPTIG00000021081	XRN1	100	61.802	ENSAOCG00000014097	xrn1	86	85.246	Amphiprion_ocellaris
ENSPTIG00000021081	XRN1	100	61.421	ENSAPEG00000006620	xrn1	98	63.107	Amphiprion_percula
ENSPTIG00000021081	XRN1	94	71.463	ENSATEG00000009752	xrn1	96	71.293	Anabas_testudineus
ENSPTIG00000021081	XRN1	99	76.320	ENSAPLG00000004905	XRN1	100	75.856	Anas_platyrhynchos
ENSPTIG00000021081	XRN1	100	73.044	ENSACAG00000004985	XRN1	100	72.482	Anolis_carolinensis
ENSPTIG00000021081	XRN1	100	93.451	ENSANAG00000029013	XRN1	99	96.296	Aotus_nancymaae
ENSPTIG00000021081	XRN1	100	61.158	ENSACLG00000004806	xrn1	96	62.559	Astatotilapia_calliptera
ENSPTIG00000021081	XRN1	99	60.571	ENSAMXG00000019370	xrn1	95	94.175	Astyanax_mexicanus
ENSPTIG00000021081	XRN1	100	93.560	ENSBTAG00000011524	XRN1	100	93.384	Bos_taurus
ENSPTIG00000021081	XRN1	71	39.041	WBGene00012730	xrn-1	80	38.995	Caenorhabditis_elegans
ENSPTIG00000021081	XRN1	100	93.215	ENSCJAG00000001872	XRN1	100	93.215	Callithrix_jacchus
ENSPTIG00000021081	XRN1	100	94.672	ENSCAFG00000007783	XRN1	100	94.672	Canis_familiaris
ENSPTIG00000021081	XRN1	100	94.400	ENSCAFG00020009120	XRN1	99	98.802	Canis_lupus_dingo
ENSPTIG00000021081	XRN1	99	92.139	ENSCHIG00000019192	XRN1	99	91.965	Capra_hircus
ENSPTIG00000021081	XRN1	100	93.396	ENSTSYG00000002705	XRN1	100	93.396	Carlito_syrichta
ENSPTIG00000021081	XRN1	56	76.490	ENSCAPG00000004604	-	99	76.656	Cavia_aperea
ENSPTIG00000021081	XRN1	100	93.805	ENSCCAG00000034800	XRN1	99	97.006	Cebus_capucinus
ENSPTIG00000021081	XRN1	100	93.864	ENSCATG00000041794	XRN1	100	93.864	Cercocebus_atys
ENSPTIG00000021081	XRN1	100	87.601	ENSCLAG00000001451	XRN1	99	95.728	Chinchilla_lanigera
ENSPTIG00000021081	XRN1	100	93.208	ENSCSAG00000011265	XRN1	100	93.208	Chlorocebus_sabaeus
ENSPTIG00000021081	XRN1	57	98.701	ENSCHOG00000013961	-	59	98.701	Choloepus_hoffmanni
ENSPTIG00000021081	XRN1	70	45.320	ENSCSAVG00000008584	-	98	45.086	Ciona_savignyi
ENSPTIG00000021081	XRN1	100	93.923	ENSCANG00000037495	XRN1	99	97.904	Colobus_angolensis_palliatus
ENSPTIG00000021081	XRN1	100	87.991	ENSCGRG00001019411	Xrn1	99	95.411	Cricetulus_griseus_chok1gshd
ENSPTIG00000021081	XRN1	100	87.991	ENSCGRG00000012464	Xrn1	99	95.411	Cricetulus_griseus_crigri
ENSPTIG00000021081	XRN1	100	56.631	ENSCSEG00000021285	xrn1	94	95.192	Cynoglossus_semilaevis
ENSPTIG00000021081	XRN1	67	69.244	ENSCVAG00000013089	xrn1	99	72.599	Cyprinodon_variegatus
ENSPTIG00000021081	XRN1	99	63.423	ENSDARG00000091652	xrn1	98	80.000	Danio_rerio
ENSPTIG00000021081	XRN1	100	87.102	ENSDORG00000013833	Xrn1	100	87.045	Dipodomys_ordii
ENSPTIG00000021081	XRN1	75	39.907	FBgn0020261	pcm	76	39.738	Drosophila_melanogaster
ENSPTIG00000021081	XRN1	86	100.000	ENSETEG00000003978	XRN1	88	99.194	Echinops_telfairi
ENSPTIG00000021081	XRN1	100	93.384	ENSEASG00005002687	XRN1	99	97.305	Equus_asinus_asinus
ENSPTIG00000021081	XRN1	100	93.384	ENSECAG00000008301	XRN1	100	93.384	Equus_caballus
ENSPTIG00000021081	XRN1	92	83.203	ENSEEUG00000011323	XRN1	92	83.203	Erinaceus_europaeus
ENSPTIG00000021081	XRN1	100	61.926	ENSELUG00000000169	xrn1	100	61.810	Esox_lucius
ENSPTIG00000021081	XRN1	100	94.985	ENSFCAG00000027589	XRN1	99	98.681	Felis_catus
ENSPTIG00000021081	XRN1	100	74.804	ENSFALG00000007021	XRN1	100	74.130	Ficedula_albicollis
ENSPTIG00000021081	XRN1	100	88.466	ENSFDAG00000020494	XRN1	99	95.253	Fukomys_damarensis
ENSPTIG00000021081	XRN1	84	68.729	ENSGMOG00000006396	xrn1	80	68.144	Gadus_morhua
ENSPTIG00000021081	XRN1	100	75.084	ENSGALG00000002706	XRN1	100	74.634	Gallus_gallus
ENSPTIG00000021081	XRN1	100	60.068	ENSGACG00000014328	xrn1	100	60.170	Gasterosteus_aculeatus
ENSPTIG00000021081	XRN1	95	78.193	ENSGAGG00000017535	XRN1	99	77.651	Gopherus_agassizii
ENSPTIG00000021081	XRN1	100	93.510	ENSGGOG00000008047	XRN1	100	93.510	Gorilla_gorilla
ENSPTIG00000021081	XRN1	100	61.137	ENSHBUG00000005908	xrn1	98	73.415	Haplochromis_burtoni
ENSPTIG00000021081	XRN1	100	89.164	ENSHGLG00000014476	XRN1	99	96.108	Heterocephalus_glaber_female
ENSPTIG00000021081	XRN1	100	89.164	ENSHGLG00100015130	XRN1	99	96.108	Heterocephalus_glaber_male
ENSPTIG00000021081	XRN1	96	71.256	ENSHCOG00000014062	xrn1	99	71.176	Hippocampus_comes
ENSPTIG00000021081	XRN1	99	62.680	ENSIPUG00000015229	xrn1	99	62.680	Ictalurus_punctatus
ENSPTIG00000021081	XRN1	100	91.518	ENSSTOG00000013552	XRN1	99	97.305	Ictidomys_tridecemlineatus
ENSPTIG00000021081	XRN1	98	86.600	ENSJJAG00000010863	Xrn1	99	94.311	Jaculus_jaculus
ENSPTIG00000021081	XRN1	94	62.302	ENSKMAG00000021356	xrn1	94	76.261	Kryptolebias_marmoratus
ENSPTIG00000021081	XRN1	100	60.182	ENSLBEG00000018656	xrn1	97	96.117	Labrus_bergylta
ENSPTIG00000021081	XRN1	100	69.875	ENSLACG00000009020	XRN1	100	69.288	Latimeria_chalumnae
ENSPTIG00000021081	XRN1	100	65.765	ENSLOCG00000007944	xrn1	98	65.693	Lepisosteus_oculatus
ENSPTIG00000021081	XRN1	63	95.981	ENSLAFG00000015426	XRN1	100	95.981	Loxodonta_africana
ENSPTIG00000021081	XRN1	100	93.982	ENSMFAG00000032599	XRN1	100	93.982	Macaca_fascicularis
ENSPTIG00000021081	XRN1	100	93.923	ENSMMUG00000014038	XRN1	100	93.923	Macaca_mulatta
ENSPTIG00000021081	XRN1	100	93.746	ENSMNEG00000034217	XRN1	100	93.746	Macaca_nemestrina
ENSPTIG00000021081	XRN1	94	71.609	ENSMAMG00000013219	xrn1	94	77.572	Mastacembelus_armatus
ENSPTIG00000021081	XRN1	100	61.045	ENSMZEG00005015099	xrn1	96	62.441	Maylandia_zebra
ENSPTIG00000021081	XRN1	99	75.131	ENSMGAG00000006333	XRN1	100	74.666	Meleagris_gallopavo
ENSPTIG00000021081	XRN1	100	93.526	ENSMICG00000048948	XRN1	96	100.000	Microcebus_murinus
ENSPTIG00000021081	XRN1	57	94.146	ENSMOCG00000008665	Xrn1	99	94.146	Microtus_ochrogaster
ENSPTIG00000021081	XRN1	100	81.574	ENSMODG00000021236	XRN1	100	81.283	Monodelphis_domestica
ENSPTIG00000021081	XRN1	100	57.377	ENSMALG00000004098	xrn1	100	57.305	Monopterus_albus
ENSPTIG00000021081	XRN1	96	94.322	MGP_CAROLIEiJ_G0032535	Xrn1	100	97.500	Mus_caroli
ENSPTIG00000021081	XRN1	100	86.259	ENSMUSG00000032410	Xrn1	100	97.500	Mus_musculus
ENSPTIG00000021081	XRN1	100	86.432	MGP_PahariEiJ_G0015404	Xrn1	100	97.500	Mus_pahari
ENSPTIG00000021081	XRN1	100	86.316	MGP_SPRETEiJ_G0033678	Xrn1	100	97.500	Mus_spretus
ENSPTIG00000021081	XRN1	100	95.609	ENSMPUG00000012040	XRN1	100	95.609	Mustela_putorius_furo
ENSPTIG00000021081	XRN1	100	90.133	ENSMLUG00000016885	XRN1	100	90.017	Myotis_lucifugus
ENSPTIG00000021081	XRN1	57	94.611	ENSNGAG00000023964	Xrn1	99	91.587	Nannospalax_galili
ENSPTIG00000021081	XRN1	100	93.805	ENSNLEG00000004726	XRN1	100	93.805	Nomascus_leucogenys
ENSPTIG00000021081	XRN1	76	98.969	ENSMEUG00000014473	-	77	99.029	Notamacropus_eugenii
ENSPTIG00000021081	XRN1	79	84.505	ENSOPRG00000007337	-	78	84.505	Ochotona_princeps
ENSPTIG00000021081	XRN1	100	61.499	ENSONIG00000016673	xrn1	99	65.546	Oreochromis_niloticus
ENSPTIG00000021081	XRN1	92	77.287	ENSOANG00000006735	XRN1	100	77.098	Ornithorhynchus_anatinus
ENSPTIG00000021081	XRN1	100	89.347	ENSOCUG00000001861	XRN1	100	89.175	Oryctolagus_cuniculus
ENSPTIG00000021081	XRN1	100	61.760	ENSORLG00000013005	xrn1	100	61.777	Oryzias_latipes
ENSPTIG00000021081	XRN1	100	62.204	ENSORLG00020005559	xrn1	100	62.326	Oryzias_latipes_hni
ENSPTIG00000021081	XRN1	100	61.469	ENSORLG00015022523	xrn1	96	63.139	Oryzias_latipes_hsok
ENSPTIG00000021081	XRN1	95	73.089	ENSOMEG00000015397	xrn1	100	73.436	Oryzias_melastigma
ENSPTIG00000021081	XRN1	100	89.936	ENSOGAG00000000170	XRN1	100	89.936	Otolemur_garnettii
ENSPTIG00000021081	XRN1	99	94.138	ENSOARG00000006343	XRN1	99	93.962	Ovis_aries
ENSPTIG00000021081	XRN1	100	93.510	ENSPPAG00000010180	XRN1	100	93.510	Pan_paniscus
ENSPTIG00000021081	XRN1	100	99.823	ENSPPRG00000007125	XRN1	100	99.823	Panthera_pardus
ENSPTIG00000021081	XRN1	100	93.569	ENSPTRG00000015482	XRN1	100	93.569	Pan_troglodytes
ENSPTIG00000021081	XRN1	100	93.805	ENSPANG00000010638	XRN1	100	93.805	Papio_anubis
ENSPTIG00000021081	XRN1	100	77.055	ENSPSIG00000018050	XRN1	100	76.884	Pelodiscus_sinensis
ENSPTIG00000021081	XRN1	57	77.900	ENSPMGG00000002648	xrn1	98	78.233	Periophthalmus_magnuspinnatus
ENSPTIG00000021081	XRN1	57	95.253	ENSPEMG00000020610	Xrn1	99	95.253	Peromyscus_maniculatus_bairdii
ENSPTIG00000021081	XRN1	65	50.591	ENSPMAG00000002975	xrn1	91	77.874	Petromyzon_marinus
ENSPTIG00000021081	XRN1	100	81.119	ENSPCIG00000028735	XRN1	99	89.938	Phascolarctos_cinereus
ENSPTIG00000021081	XRN1	91	64.891	ENSPFOG00000013932	xrn1	99	65.170	Poecilia_formosa
ENSPTIG00000021081	XRN1	91	63.982	ENSPLAG00000021653	xrn1	99	64.657	Poecilia_latipinna
ENSPTIG00000021081	XRN1	89	64.637	ENSPMEG00000003076	xrn1	95	64.919	Poecilia_mexicana
ENSPTIG00000021081	XRN1	100	60.909	ENSPREG00000021147	xrn1	97	62.022	Poecilia_reticulata
ENSPTIG00000021081	XRN1	100	92.681	ENSPPYG00000014172	XRN1	100	92.681	Pongo_abelii
ENSPTIG00000021081	XRN1	87	84.413	ENSPCAG00000005638	XRN1	96	84.413	Procavia_capensis
ENSPTIG00000021081	XRN1	100	93.632	ENSPCOG00000013089	XRN1	99	97.605	Propithecus_coquereli
ENSPTIG00000021081	XRN1	94	92.900	ENSPVAG00000016265	XRN1	96	92.900	Pteropus_vampyrus
ENSPTIG00000021081	XRN1	100	61.538	ENSPNYG00000010570	xrn1	95	63.337	Pundamilia_nyererei
ENSPTIG00000021081	XRN1	99	60.599	ENSPNAG00000023531	xrn1	97	61.006	Pygocentrus_nattereri
ENSPTIG00000021081	XRN1	100	86.952	ENSRNOG00000042951	Xrn1	100	86.836	Rattus_norvegicus
ENSPTIG00000021081	XRN1	100	92.979	ENSRBIG00000041227	XRN1	100	92.979	Rhinopithecus_bieti
ENSPTIG00000021081	XRN1	67	54.496	YGL173C	XRN1	73	54.496	Saccharomyces_cerevisiae
ENSPTIG00000021081	XRN1	100	93.274	ENSSBOG00000029561	XRN1	100	93.274	Saimiri_boliviensis_boliviensis
ENSPTIG00000021081	XRN1	99	81.195	ENSSHAG00000016207	XRN1	100	80.840	Sarcophilus_harrisii
ENSPTIG00000021081	XRN1	100	61.472	ENSSFOG00015024211	xrn1	96	63.164	Scleropages_formosus
ENSPTIG00000021081	XRN1	93	72.639	ENSSMAG00000016534	xrn1	94	72.559	Scophthalmus_maximus
ENSPTIG00000021081	XRN1	90	73.089	ENSSDUG00000010306	xrn1	97	73.089	Seriola_dumerili
ENSPTIG00000021081	XRN1	94	72.554	ENSSLDG00000021543	xrn1	99	72.554	Seriola_lalandi_dorsalis
ENSPTIG00000021081	XRN1	68	84.830	ENSSARG00000007741	-	83	84.830	Sorex_araneus
ENSPTIG00000021081	XRN1	100	77.204	ENSTGUG00000008498	XRN1	100	76.682	Taeniopygia_guttata
ENSPTIG00000021081	XRN1	100	59.419	ENSTRUG00000004895	xrn1	96	77.292	Takifugu_rubripes
ENSPTIG00000021081	XRN1	100	59.109	ENSTNIG00000017615	xrn1	99	59.541	Tetraodon_nigroviridis
ENSPTIG00000021081	XRN1	84	96.765	ENSTBEG00000003256	XRN1	84	96.765	Tupaia_belangeri
ENSPTIG00000021081	XRN1	100	89.930	ENSTTRG00000012914	XRN1	100	89.696	Tursiops_truncatus
ENSPTIG00000021081	XRN1	100	94.558	ENSUAMG00000001608	XRN1	99	98.802	Ursus_americanus
ENSPTIG00000021081	XRN1	100	96.372	ENSUMAG00000013625	XRN1	100	96.372	Ursus_maritimus
ENSPTIG00000021081	XRN1	100	91.042	ENSVPAG00000004690	XRN1	100	91.042	Vicugna_pacos
ENSPTIG00000021081	XRN1	100	95.843	ENSVVUG00000024461	XRN1	98	100.000	Vulpes_vulpes
ENSPTIG00000021081	XRN1	100	69.217	ENSXETG00000000619	xrn1	97	88.978	Xenopus_tropicalis
ENSPTIG00000021081	XRN1	100	61.220	ENSXCOG00000007917	xrn1	95	62.553	Xiphophorus_couchianus
ENSPTIG00000021081	XRN1	92	72.231	ENSXMAG00000018320	xrn1	94	72.394	Xiphophorus_maculatus