EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTIG00000021565 (Gene tree)
Gene ID: 102961578
Gene Symbol: GAR1
Alias: -
Full Name: GAR1 ribonucleoprotein
Gene Type: protein_coding
Species: Panthera_tigris_altaica
Status: putative
Strand: Minus strand
Length: 8838 bases
Position: chrKE722334.1:3042732-3051569
Accession: 102961578
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTIP00000025976	Gar1	PF04410.14	8.9e-39	1	1
ENSPTIP00000025979	Gar1	PF04410.14	9.3e-39	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTIT00000030526	GAR1-202	1330	-	ENSPTIP00000025979	219 (aa)	-	-
ENSPTIT00000030523	GAR1-201	630	XM_007098258	ENSPTIP00000025976	209 (aa)	XP_007098320	UPI0002930F5B

Gene Model

Click here to download ENSPTIG00000021565's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptg03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTIG00000021565's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTIG00000021565	GAR1	52	99.083	ENSG00000109534	GAR1	100	92.727	Homo_sapiens
ENSPTIG00000021565	GAR1	68	91.549	ENSAPOG00000019754	gar1	50	94.393	Acanthochromis_polyacanthus
ENSPTIG00000021565	GAR1	99	98.544	ENSAMEG00000004605	GAR1	100	98.544	Ailuropoda_melanoleuca
ENSPTIG00000021565	GAR1	51	94.393	ENSAOCG00000020947	gar1	50	94.393	Amphiprion_ocellaris
ENSPTIG00000021565	GAR1	51	94.393	ENSAPEG00000001676	gar1	50	94.393	Amphiprion_percula
ENSPTIG00000021565	GAR1	51	94.393	ENSATEG00000003733	gar1	50	94.393	Anabas_testudineus
ENSPTIG00000021565	GAR1	51	89.623	ENSAPLG00000010926	GAR1	60	88.889	Anas_platyrhynchos
ENSPTIG00000021565	GAR1	51	91.509	ENSACAG00000010031	GAR1	51	90.741	Anolis_carolinensis
ENSPTIG00000021565	GAR1	52	99.083	ENSANAG00000021608	GAR1	100	92.727	Aotus_nancymaae
ENSPTIG00000021565	GAR1	53	88.182	ENSAMXG00000015752	gar1	66	85.000	Astyanax_mexicanus
ENSPTIG00000021565	GAR1	100	96.682	ENSBTAG00000000748	GAR1	100	96.682	Bos_taurus
ENSPTIG00000021565	GAR1	83	93.122	ENSCJAG00000004041	GAR1	100	92.727	Callithrix_jacchus
ENSPTIG00000021565	GAR1	70	93.197	ENSCAFG00000011503	GAR1	60	93.197	Canis_familiaris
ENSPTIG00000021565	GAR1	88	99.457	ENSCAFG00020015566	GAR1	99	97.906	Canis_lupus_dingo
ENSPTIG00000021565	GAR1	62	88.372	ENSCHIG00000011049	-	55	86.239	Capra_hircus
ENSPTIG00000021565	GAR1	99	97.115	ENSCHIG00000016026	-	97	97.115	Capra_hircus
ENSPTIG00000021565	GAR1	52	99.083	ENSTSYG00000013668	-	51	99.083	Carlito_syrichta
ENSPTIG00000021565	GAR1	68	76.923	ENSTSYG00000026632	-	56	90.826	Carlito_syrichta
ENSPTIG00000021565	GAR1	53	99.091	ENSCPOG00000004216	GAR1	50	99.083	Cavia_porcellus
ENSPTIG00000021565	GAR1	52	99.083	ENSCCAG00000029372	GAR1	100	92.727	Cebus_capucinus
ENSPTIG00000021565	GAR1	53	99.091	ENSCATG00000021854	GAR1	55	99.083	Cercocebus_atys
ENSPTIG00000021565	GAR1	53	97.273	ENSCLAG00000005335	GAR1	96	96.104	Chinchilla_lanigera
ENSPTIG00000021565	GAR1	51	99.065	ENSCSAG00000003922	GAR1	55	99.083	Chlorocebus_sabaeus
ENSPTIG00000021565	GAR1	55	98.276	ENSCHOG00000007484	-	51	98.276	Choloepus_hoffmanni
ENSPTIG00000021565	GAR1	59	87.903	ENSCPBG00000004310	GAR1	69	78.102	Chrysemys_picta_bellii
ENSPTIG00000021565	GAR1	53	98.182	ENSCANG00000039262	GAR1	50	98.165	Colobus_angolensis_palliatus
ENSPTIG00000021565	GAR1	51	93.458	ENSCVAG00000002103	gar1	51	93.458	Cyprinodon_variegatus
ENSPTIG00000021565	GAR1	51	91.589	ENSDARG00000076526	gar1	50	90.265	Danio_rerio
ENSPTIG00000021565	GAR1	52	98.165	ENSDNOG00000037632	GAR1	55	98.165	Dasypus_novemcinctus
ENSPTIG00000021565	GAR1	53	97.297	ENSDORG00000000482	Gar1	50	97.248	Dipodomys_ordii
ENSPTIG00000021565	GAR1	99	97.143	ENSEASG00005004658	GAR1	97	97.143	Equus_asinus_asinus
ENSPTIG00000021565	GAR1	99	97.619	ENSECAG00000013624	GAR1	97	97.619	Equus_caballus
ENSPTIG00000021565	GAR1	88	55.862	ENSFCAG00000025841	-	57	64.706	Felis_catus
ENSPTIG00000021565	GAR1	100	99.522	ENSFCAG00000040791	-	100	99.522	Felis_catus
ENSPTIG00000021565	GAR1	51	92.453	ENSFALG00000006445	GAR1	50	91.667	Ficedula_albicollis
ENSPTIG00000021565	GAR1	53	90.991	ENSFHEG00000008068	gar1	50	92.523	Fundulus_heteroclitus
ENSPTIG00000021565	GAR1	59	82.258	ENSGAGG00000004393	GAR1	62	89.256	Gopherus_agassizii
ENSPTIG00000021565	GAR1	53	80.180	ENSGGOG00000036205	-	54	80.734	Gorilla_gorilla
ENSPTIG00000021565	GAR1	52	98.165	ENSGGOG00000008681	GAR1	100	92.273	Gorilla_gorilla
ENSPTIG00000021565	GAR1	51	99.065	ENSHGLG00000000493	GAR1	96	98.630	Heterocephalus_glaber_female
ENSPTIG00000021565	GAR1	53	90.000	ENSIPUG00000003194	gar1	63	84.962	Ictalurus_punctatus
ENSPTIG00000021565	GAR1	52	96.330	ENSSTOG00000005577	GAR1	71	96.364	Ictidomys_tridecemlineatus
ENSPTIG00000021565	GAR1	53	90.090	ENSKMAG00000010402	gar1	51	92.523	Kryptolebias_marmoratus
ENSPTIG00000021565	GAR1	60	86.607	ENSLACG00000003306	GAR1	65	87.037	Latimeria_chalumnae
ENSPTIG00000021565	GAR1	52	83.333	ENSMFAG00000003572	-	53	82.569	Macaca_fascicularis
ENSPTIG00000021565	GAR1	53	99.091	ENSMFAG00000024592	GAR1	50	99.083	Macaca_fascicularis
ENSPTIG00000021565	GAR1	53	99.091	ENSMMUG00000021225	GAR1	50	99.083	Macaca_mulatta
ENSPTIG00000021565	GAR1	53	99.091	ENSMNEG00000042594	GAR1	50	99.083	Macaca_nemestrina
ENSPTIG00000021565	GAR1	53	99.091	ENSMLEG00000002496	GAR1	50	99.083	Mandrillus_leucophaeus
ENSPTIG00000021565	GAR1	52	95.413	ENSMAUG00000016788	Gar1	70	98.182	Mesocricetus_auratus
ENSPTIG00000021565	GAR1	67	94.326	ENSMICG00000003326	GAR1	50	98.165	Microcebus_murinus
ENSPTIG00000021565	GAR1	52	96.330	ENSMOCG00000001340	Gar1	70	100.000	Microtus_ochrogaster
ENSPTIG00000021565	GAR1	51	96.262	ENSMMOG00000004156	gar1	52	96.262	Mola_mola
ENSPTIG00000021565	GAR1	51	92.523	ENSMALG00000009672	gar1	50	92.523	Monopterus_albus
ENSPTIG00000021565	GAR1	52	95.413	MGP_CAROLIEiJ_G0025627	Gar1	70	100.000	Mus_caroli
ENSPTIG00000021565	GAR1	53	95.455	ENSMUSG00000028010	Gar1	70	100.000	Mus_musculus
ENSPTIG00000021565	GAR1	53	97.273	MGP_PahariEiJ_G0027076	Gar1	70	100.000	Mus_pahari
ENSPTIG00000021565	GAR1	53	95.455	MGP_SPRETEiJ_G0026580	Gar1	70	100.000	Mus_spretus
ENSPTIG00000021565	GAR1	100	100.000	ENSMPUG00000008615	GAR1	100	100.000	Mustela_putorius_furo
ENSPTIG00000021565	GAR1	100	91.964	ENSMLUG00000003776	GAR1	100	91.964	Myotis_lucifugus
ENSPTIG00000021565	GAR1	53	97.273	ENSNGAG00000008268	Gar1	99	96.053	Nannospalax_galili
ENSPTIG00000021565	GAR1	100	91.818	ENSNLEG00000016578	GAR1	100	91.818	Nomascus_leucogenys
ENSPTIG00000021565	GAR1	53	82.883	ENSNLEG00000034282	-	55	82.569	Nomascus_leucogenys
ENSPTIG00000021565	GAR1	52	85.321	ENSOPRG00000012089	GAR1	52	80.620	Ochotona_princeps
ENSPTIG00000021565	GAR1	51	98.131	ENSODEG00000011083	GAR1	56	97.248	Octodon_degus
ENSPTIG00000021565	GAR1	52	98.165	ENSOCUG00000003901	GAR1	100	93.548	Oryctolagus_cuniculus
ENSPTIG00000021565	GAR1	52	98.165	ENSOGAG00000004693	GAR1	100	94.884	Otolemur_garnettii
ENSPTIG00000021565	GAR1	100	97.156	ENSOARG00000004910	GAR1	100	97.156	Ovis_aries
ENSPTIG00000021565	GAR1	52	99.083	ENSPPAG00000014081	GAR1	98	92.893	Pan_paniscus
ENSPTIG00000021565	GAR1	100	100.000	ENSPPRG00000023697	GAR1	100	100.000	Panthera_pardus
ENSPTIG00000021565	GAR1	53	99.091	ENSPTRG00000016364	GAR1	100	93.119	Pan_troglodytes
ENSPTIG00000021565	GAR1	77	81.651	ENSPTRG00000049340	-	69	79.021	Pan_troglodytes
ENSPTIG00000021565	GAR1	53	99.091	ENSPANG00000000639	GAR1	100	92.273	Papio_anubis
ENSPTIG00000021565	GAR1	51	93.396	ENSPKIG00000018991	gar1	61	87.591	Paramormyrops_kingsleyae
ENSPTIG00000021565	GAR1	51	92.453	ENSPSIG00000002970	GAR1	50	90.826	Pelodiscus_sinensis
ENSPTIG00000021565	GAR1	52	95.413	ENSPEMG00000015838	Gar1	70	98.182	Peromyscus_maniculatus_bairdii
ENSPTIG00000021565	GAR1	51	92.523	ENSPFOG00000024155	gar1	51	92.523	Poecilia_formosa
ENSPTIG00000021565	GAR1	51	92.523	ENSPLAG00000015056	gar1	51	92.523	Poecilia_latipinna
ENSPTIG00000021565	GAR1	51	93.458	ENSPMEG00000009320	gar1	51	93.458	Poecilia_mexicana
ENSPTIG00000021565	GAR1	52	99.083	ENSPPYG00000014996	GAR1	100	92.727	Pongo_abelii
ENSPTIG00000021565	GAR1	51	99.065	ENSPCOG00000027049	GAR1	97	94.764	Propithecus_coquereli
ENSPTIG00000021565	GAR1	100	95.261	ENSPVAG00000005992	GAR1	88	95.261	Pteropus_vampyrus
ENSPTIG00000021565	GAR1	53	91.818	ENSPNYG00000020926	gar1	55	84.848	Pundamilia_nyererei
ENSPTIG00000021565	GAR1	53	96.364	ENSRNOG00000061146	Gar1	63	97.196	Rattus_norvegicus
ENSPTIG00000021565	GAR1	51	99.065	ENSRBIG00000019547	GAR1	55	99.083	Rhinopithecus_bieti
ENSPTIG00000021565	GAR1	54	81.250	ENSRBIG00000042411	-	63	71.094	Rhinopithecus_bieti
ENSPTIG00000021565	GAR1	53	99.091	ENSRROG00000028454	GAR1	55	99.083	Rhinopithecus_roxellana
ENSPTIG00000021565	GAR1	54	81.250	ENSRROG00000044348	-	52	80.734	Rhinopithecus_roxellana
ENSPTIG00000021565	GAR1	52	99.083	ENSSBOG00000024785	GAR1	50	99.083	Saimiri_boliviensis_boliviensis
ENSPTIG00000021565	GAR1	51	93.458	ENSSLDG00000023264	gar1	50	93.458	Seriola_lalandi_dorsalis
ENSPTIG00000021565	GAR1	51	93.396	ENSSPUG00000008707	GAR1	61	91.743	Sphenodon_punctatus
ENSPTIG00000021565	GAR1	99	97.596	ENSSSCG00000009137	GAR1	99	97.596	Sus_scrofa
ENSPTIG00000021565	GAR1	68	81.690	ENSTRUG00000020580	gar1	54	89.381	Takifugu_rubripes
ENSPTIG00000021565	GAR1	50	93.269	ENSTNIG00000013023	gar1	61	93.458	Tetraodon_nigroviridis
ENSPTIG00000021565	GAR1	88	99.457	ENSUAMG00000005652	GAR1	99	97.906	Ursus_americanus
ENSPTIG00000021565	GAR1	100	98.565	ENSUMAG00000000776	GAR1	100	98.565	Ursus_maritimus
ENSPTIG00000021565	GAR1	100	98.095	ENSVPAG00000009844	GAR1	88	98.095	Vicugna_pacos
ENSPTIG00000021565	GAR1	100	98.104	ENSVVUG00000017612	GAR1	100	98.104	Vulpes_vulpes
ENSPTIG00000021565	GAR1	56	86.885	ENSXETG00000024114	gar1	61	76.692	Xenopus_tropicalis