EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000000349 (Gene tree)
Gene ID: 456632
Gene Symbol: SRRM1
Alias: -
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 30234 bases
Position: chr1:23839272-23869505
Accession: 8500
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000082188	PWI	PF01480.17	9.4e-30	1	1
ENSPTRP00000066619	PWI	PF01480.17	1e-29	1	1
ENSPTRP00000065401	PWI	PF01480.17	1.1e-29	1	1
ENSPTRP00000000609	PWI	PF01480.17	1.1e-29	1	1
ENSPTRP00000092355	PWI	PF01480.17	9.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000092222	-	2646	-	ENSPTRP00000066619	881 (aa)	-	A0A2I3RPK2
ENSPTRT00000081759	-	2370	-	ENSPTRP00000082188	789 (aa)	-	A0A2I3T004
ENSPTRT00000092758	-	4314	XM_009450919	ENSPTRP00000092355	835 (aa)	XP_009449194	A0A2I3TSW9
ENSPTRT00000000690	-	4041	XM_009450883	ENSPTRP00000000609	918 (aa)	XP_009449158	H2PYC0
ENSPTRT00000109537	-	4000	XM_001167927	ENSPTRP00000065401	904 (aa)	XP_001167927	K7D4C6

Gene Model

Click here to download ENSPTRG00000000349's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03013	RNA transport	KEGG
ptr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000000349's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000000349	SRRM1	100	100.000	ENSG00000133226	SRRM1	100	100.000	Homo_sapiens
ENSPTRG00000000349	SRRM1	100	97.821	ENSAMEG00000010075	SRRM1	100	97.821	Ailuropoda_melanoleuca
ENSPTRG00000000349	SRRM1	54	69.758	ENSAPLG00000002066	SRRM1	59	76.335	Anas_platyrhynchos
ENSPTRG00000000349	SRRM1	100	99.020	ENSANAG00000035606	SRRM1	100	99.020	Aotus_nancymaae
ENSPTRG00000000349	SRRM1	100	97.677	ENSBTAG00000013772	SRRM1	100	97.677	Bos_taurus
ENSPTRG00000000349	SRRM1	100	98.039	ENSCJAG00000020822	SRRM1	100	98.295	Callithrix_jacchus
ENSPTRG00000000349	SRRM1	89	88.784	ENSCAFG00020000003	-	98	89.573	Canis_lupus_dingo
ENSPTRG00000000349	SRRM1	100	98.230	ENSCAFG00020020948	SRRM1	100	98.230	Canis_lupus_dingo
ENSPTRG00000000349	SRRM1	100	96.507	ENSCHIG00000014656	SRRM1	100	96.507	Capra_hircus
ENSPTRG00000000349	SRRM1	100	98.341	ENSTSYG00000006782	SRRM1	100	98.341	Carlito_syrichta
ENSPTRG00000000349	SRRM1	100	94.251	ENSCAPG00000011473	SRRM1	100	94.731	Cavia_aperea
ENSPTRG00000000349	SRRM1	100	95.643	ENSCPOG00000015594	SRRM1	100	95.643	Cavia_porcellus
ENSPTRG00000000349	SRRM1	100	98.783	ENSCCAG00000029474	SRRM1	100	98.783	Cebus_capucinus
ENSPTRG00000000349	SRRM1	100	99.558	ENSCATG00000031303	SRRM1	100	99.558	Cercocebus_atys
ENSPTRG00000000349	SRRM1	100	96.623	ENSCLAG00000014592	SRRM1	100	96.623	Chinchilla_lanigera
ENSPTRG00000000349	SRRM1	79	97.465	ENSCHOG00000000027	SRRM1	73	97.500	Choloepus_hoffmanni
ENSPTRG00000000349	SRRM1	100	99.558	ENSCANG00000028271	SRRM1	100	99.558	Colobus_angolensis_palliatus
ENSPTRG00000000349	SRRM1	96	93.665	ENSDNOG00000049141	SRRM1	98	93.665	Dasypus_novemcinctus
ENSPTRG00000000349	SRRM1	100	97.168	ENSEASG00005004270	SRRM1	100	97.168	Equus_asinus_asinus
ENSPTRG00000000349	SRRM1	100	97.345	ENSECAG00000026981	SRRM1	100	97.345	Equus_caballus
ENSPTRG00000000349	SRRM1	53	100.000	ENSEEUG00000013830	SRRM1	57	90.385	Erinaceus_europaeus
ENSPTRG00000000349	SRRM1	100	98.451	ENSFCAG00000000678	-	100	98.451	Felis_catus
ENSPTRG00000000349	SRRM1	100	97.386	ENSFDAG00000009903	SRRM1	100	97.386	Fukomys_damarensis
ENSPTRG00000000349	SRRM1	100	99.889	ENSGGOG00000005209	SRRM1	100	99.889	Gorilla_gorilla
ENSPTRG00000000349	SRRM1	100	97.386	ENSHGLG00000017105	SRRM1	100	97.386	Heterocephalus_glaber_female
ENSPTRG00000000349	SRRM1	99	96.889	ENSHGLG00100016772	SRRM1	99	96.889	Heterocephalus_glaber_male
ENSPTRG00000000349	SRRM1	100	98.584	ENSSTOG00000014640	SRRM1	100	98.584	Ictidomys_tridecemlineatus
ENSPTRG00000000349	SRRM1	100	95.016	ENSLAFG00000013830	SRRM1	100	95.016	Loxodonta_africana
ENSPTRG00000000349	SRRM1	99	72.343	ENSMFAG00000038841	-	61	80.885	Macaca_fascicularis
ENSPTRG00000000349	SRRM1	100	99.673	ENSMFAG00000025726	SRRM1	100	99.673	Macaca_fascicularis
ENSPTRG00000000349	SRRM1	100	99.558	ENSMMUG00000006645	SRRM1	100	99.558	Macaca_mulatta
ENSPTRG00000000349	SRRM1	100	99.668	ENSMNEG00000039415	SRRM1	100	99.668	Macaca_nemestrina
ENSPTRG00000000349	SRRM1	72	100.000	ENSMLEG00000038030	-	100	92.048	Mandrillus_leucophaeus
ENSPTRG00000000349	SRRM1	61	71.082	ENSMLEG00000032221	-	62	73.929	Mandrillus_leucophaeus
ENSPTRG00000000349	SRRM1	100	98.475	ENSMICG00000006553	SRRM1	100	98.475	Microcebus_murinus
ENSPTRG00000000349	SRRM1	100	100.000	ENSNLEG00000008966	SRRM1	100	100.000	Nomascus_leucogenys
ENSPTRG00000000349	SRRM1	81	81.445	ENSMEUG00000014704	SRRM1	65	94.737	Notamacropus_eugenii
ENSPTRG00000000349	SRRM1	100	96.634	ENSOCUG00000008438	SRRM1	100	96.634	Oryctolagus_cuniculus
ENSPTRG00000000349	SRRM1	100	97.495	ENSOGAG00000010210	SRRM1	100	97.495	Otolemur_garnettii
ENSPTRG00000000349	SRRM1	92	97.995	ENSOARG00000006453	SRRM1	99	97.995	Ovis_aries
ENSPTRG00000000349	SRRM1	100	99.889	ENSPPAG00000043918	SRRM1	100	99.889	Pan_paniscus
ENSPTRG00000000349	SRRM1	100	98.451	ENSPPRG00000002509	SRRM1	100	98.451	Panthera_pardus
ENSPTRG00000000349	SRRM1	100	94.308	ENSPTIG00000008778	-	100	94.308	Panthera_tigris_altaica
ENSPTRG00000000349	SRRM1	99	68.373	ENSPANG00000035568	-	62	75.978	Papio_anubis
ENSPTRG00000000349	SRRM1	100	98.901	ENSPANG00000010194	SRRM1	100	98.901	Papio_anubis
ENSPTRG00000000349	SRRM1	50	93.722	ENSPCIG00000009214	SRRM1	62	84.544	Phascolarctos_cinereus
ENSPTRG00000000349	SRRM1	100	99.129	ENSPPYG00000001716	SRRM1	100	99.129	Pongo_abelii
ENSPTRG00000000349	SRRM1	68	100.000	ENSPCAG00000015138	SRRM1	52	100.000	Procavia_capensis
ENSPTRG00000000349	SRRM1	100	97.933	ENSPCOG00000021311	SRRM1	100	97.933	Propithecus_coquereli
ENSPTRG00000000349	SRRM1	100	97.603	ENSPVAG00000005836	SRRM1	100	97.603	Pteropus_vampyrus
ENSPTRG00000000349	SRRM1	99	92.913	ENSRBIG00000035461	SRRM1	99	92.913	Rhinopithecus_bieti
ENSPTRG00000000349	SRRM1	100	99.668	ENSRROG00000035151	SRRM1	100	99.668	Rhinopithecus_roxellana
ENSPTRG00000000349	SRRM1	100	97.168	ENSSBOG00000019884	SRRM1	99	100.000	Saimiri_boliviensis_boliviensis
ENSPTRG00000000349	SRRM1	61	96.117	ENSSHAG00000011061	SRRM1	55	92.534	Sarcophilus_harrisii
ENSPTRG00000000349	SRRM1	100	90.539	ENSSARG00000013718	SRRM1	91	90.539	Sorex_araneus
ENSPTRG00000000349	SRRM1	66	73.868	ENSSPUG00000015890	SRRM1	57	83.026	Sphenodon_punctatus
ENSPTRG00000000349	SRRM1	100	97.844	ENSSSCG00000032947	SRRM1	100	97.952	Sus_scrofa
ENSPTRG00000000349	SRRM1	100	97.168	ENSTBEG00000000100	SRRM1	100	97.168	Tupaia_belangeri
ENSPTRG00000000349	SRRM1	100	96.766	ENSTTRG00000009365	SRRM1	100	97.036	Tursiops_truncatus
ENSPTRG00000000349	SRRM1	92	97.132	ENSUMAG00000013121	SRRM1	95	98.997	Ursus_maritimus
ENSPTRG00000000349	SRRM1	96	93.764	ENSVPAG00000007698	SRRM1	100	93.764	Vicugna_pacos
ENSPTRG00000000349	SRRM1	99	95.642	ENSVVUG00000026966	SRRM1	100	93.757	Vulpes_vulpes