EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000000453 (Gene tree)
Gene ID: 469256
Gene Symbol: PUM1
Alias: -
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 143998 bases
Position: chr1:30144013-30288010
Accession: 6968
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000085837	PUF	PF00806.19	4e-71	1	8
ENSPTRP00000085837	PUF	PF00806.19	4e-71	2	8
ENSPTRP00000085837	PUF	PF00806.19	4e-71	3	8
ENSPTRP00000085837	PUF	PF00806.19	4e-71	4	8
ENSPTRP00000085837	PUF	PF00806.19	4e-71	5	8
ENSPTRP00000085837	PUF	PF00806.19	4e-71	6	8
ENSPTRP00000085837	PUF	PF00806.19	4e-71	7	8
ENSPTRP00000085837	PUF	PF00806.19	4e-71	8	8
ENSPTRP00000065943	PUF	PF00806.19	1.6e-70	1	8
ENSPTRP00000065943	PUF	PF00806.19	1.6e-70	2	8
ENSPTRP00000065943	PUF	PF00806.19	1.6e-70	3	8
ENSPTRP00000065943	PUF	PF00806.19	1.6e-70	4	8
ENSPTRP00000065943	PUF	PF00806.19	1.6e-70	5	8
ENSPTRP00000065943	PUF	PF00806.19	1.6e-70	6	8
ENSPTRP00000065943	PUF	PF00806.19	1.6e-70	7	8
ENSPTRP00000065943	PUF	PF00806.19	1.6e-70	8	8
ENSPTRP00000087061	PUF	PF00806.19	3.5e-70	1	8
ENSPTRP00000087061	PUF	PF00806.19	3.5e-70	2	8
ENSPTRP00000087061	PUF	PF00806.19	3.5e-70	3	8
ENSPTRP00000087061	PUF	PF00806.19	3.5e-70	4	8
ENSPTRP00000087061	PUF	PF00806.19	3.5e-70	5	8
ENSPTRP00000087061	PUF	PF00806.19	3.5e-70	6	8
ENSPTRP00000087061	PUF	PF00806.19	3.5e-70	7	8
ENSPTRP00000087061	PUF	PF00806.19	3.5e-70	8	8
ENSPTRP00000072005	PUF	PF00806.19	7.1e-70	1	8
ENSPTRP00000072005	PUF	PF00806.19	7.1e-70	2	8
ENSPTRP00000072005	PUF	PF00806.19	7.1e-70	3	8
ENSPTRP00000072005	PUF	PF00806.19	7.1e-70	4	8
ENSPTRP00000072005	PUF	PF00806.19	7.1e-70	5	8
ENSPTRP00000072005	PUF	PF00806.19	7.1e-70	6	8
ENSPTRP00000072005	PUF	PF00806.19	7.1e-70	7	8
ENSPTRP00000072005	PUF	PF00806.19	7.1e-70	8	8
ENSPTRP00000000792	PUF	PF00806.19	7.6e-70	1	8
ENSPTRP00000000792	PUF	PF00806.19	7.6e-70	2	8
ENSPTRP00000000792	PUF	PF00806.19	7.6e-70	3	8
ENSPTRP00000000792	PUF	PF00806.19	7.6e-70	4	8
ENSPTRP00000000792	PUF	PF00806.19	7.6e-70	5	8
ENSPTRP00000000792	PUF	PF00806.19	7.6e-70	6	8
ENSPTRP00000000792	PUF	PF00806.19	7.6e-70	7	8
ENSPTRP00000000792	PUF	PF00806.19	7.6e-70	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000088665	-	3327	XM_009452482	ENSPTRP00000065943	1108 (aa)	XP_009450757	A0A2I3RMM5
ENSPTRT00000098550	-	5172	XM_009452490	ENSPTRP00000087061	1092 (aa)	XP_009450765	A0A2I3TCX9
ENSPTRT00000082608	-	2835	-	ENSPTRP00000085837	944 (aa)	-	A0A2I3T9D4
ENSPTRT00000086831	-	3651	-	ENSPTRP00000072005	1216 (aa)	-	A0A2I3S4X5
ENSPTRT00000103763	-	490	-	ENSPTRP00000068055	124 (aa)	-	A0A2J8IY00
ENSPTRT00000000885	-	5475	XM_001157169	ENSPTRP00000000792	1193 (aa)	XP_001157169	H2PYI5
ENSPTRT00000099182	-	294	-	ENSPTRP00000077464	97 (aa)	-	A0A2I3SKF4

Gene Model

Click here to download ENSPTRG00000000453's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000000453's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000000453	PUM1	83	87.354	ENSPTRG00000011692	PUM2	100	88.889

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000000453	PUM1	100	100.000	ENSG00000134644	PUM1	100	100.000	Homo_sapiens
ENSPTRG00000000453	PUM1	90	91.566	ENSAPOG00000021632	pum1	100	91.084	Acanthochromis_polyacanthus
ENSPTRG00000000453	PUM1	100	100.000	ENSAMEG00000017656	PUM1	99	97.699	Ailuropoda_melanoleuca
ENSPTRG00000000453	PUM1	100	81.312	ENSACIG00000021013	pum1	93	90.602	Amphilophus_citrinellus
ENSPTRG00000000453	PUM1	90	91.566	ENSAOCG00000003944	pum1	100	91.084	Amphiprion_ocellaris
ENSPTRG00000000453	PUM1	90	91.566	ENSAPEG00000014550	pum1	100	91.084	Amphiprion_percula
ENSPTRG00000000453	PUM1	100	91.566	ENSATEG00000016004	pum1	100	91.084	Anabas_testudineus
ENSPTRG00000000453	PUM1	100	98.309	ENSAPLG00000009351	PUM1	100	97.645	Anas_platyrhynchos
ENSPTRG00000000453	PUM1	100	98.309	ENSACAG00000000682	PUM1	99	94.938	Anolis_carolinensis
ENSPTRG00000000453	PUM1	100	100.000	ENSANAG00000027865	PUM1	100	100.000	Aotus_nancymaae
ENSPTRG00000000453	PUM1	90	76.384	ENSACLG00000019354	pum1	100	79.001	Astatotilapia_calliptera
ENSPTRG00000000453	PUM1	100	92.754	ENSAMXG00000020607	pum1	92	92.754	Astyanax_mexicanus
ENSPTRG00000000453	PUM1	100	100.000	ENSBTAG00000018979	PUM1	100	100.000	Bos_taurus
ENSPTRG00000000453	PUM1	100	100.000	ENSCJAG00000006035	PUM1	100	100.000	Callithrix_jacchus
ENSPTRG00000000453	PUM1	100	100.000	ENSCAFG00000011205	PUM1	100	97.140	Canis_familiaris
ENSPTRG00000000453	PUM1	92	97.634	ENSCAFG00020024616	PUM1	99	99.051	Canis_lupus_dingo
ENSPTRG00000000453	PUM1	100	100.000	ENSCHIG00000012952	PUM1	100	99.458	Capra_hircus
ENSPTRG00000000453	PUM1	100	99.682	ENSTSYG00000008868	PUM1	100	99.682	Carlito_syrichta
ENSPTRG00000000453	PUM1	100	99.306	ENSCPOG00000031613	PUM1	100	99.306	Cavia_porcellus
ENSPTRG00000000453	PUM1	100	100.000	ENSCATG00000017991	PUM1	100	100.000	Cercocebus_atys
ENSPTRG00000000453	PUM1	100	99.458	ENSCLAG00000007662	PUM1	100	99.458	Chinchilla_lanigera
ENSPTRG00000000453	PUM1	100	100.000	ENSCSAG00000001028	PUM1	100	99.000	Chlorocebus_sabaeus
ENSPTRG00000000453	PUM1	99	96.408	ENSCHOG00000010245	PUM1	93	96.418	Choloepus_hoffmanni
ENSPTRG00000000453	PUM1	100	98.068	ENSCPBG00000009288	PUM1	100	98.068	Chrysemys_picta_bellii
ENSPTRG00000000453	PUM1	100	100.000	ENSCANG00000042606	PUM1	100	100.000	Colobus_angolensis_palliatus
ENSPTRG00000000453	PUM1	100	99.306	ENSCGRG00001024949	Pum1	100	99.306	Cricetulus_griseus_chok1gshd
ENSPTRG00000000453	PUM1	100	99.306	ENSCGRG00000014197	Pum1	100	99.306	Cricetulus_griseus_crigri
ENSPTRG00000000453	PUM1	85	81.041	ENSCSEG00000015981	pum1	100	77.706	Cynoglossus_semilaevis
ENSPTRG00000000453	PUM1	100	80.817	ENSCVAG00000007043	pum1	100	75.785	Cyprinodon_variegatus
ENSPTRG00000000453	PUM1	100	92.995	ENSDARG00000099256	pum1	95	93.750	Danio_rerio
ENSPTRG00000000453	PUM1	100	100.000	ENSDNOG00000010939	PUM1	100	99.159	Dasypus_novemcinctus
ENSPTRG00000000453	PUM1	89	98.583	ENSDORG00000001875	Pum1	100	99.034	Dipodomys_ordii
ENSPTRG00000000453	PUM1	85	100.000	ENSETEG00000004355	PUM1	87	93.945	Echinops_telfairi
ENSPTRG00000000453	PUM1	100	100.000	ENSEASG00005010813	PUM1	100	99.242	Equus_asinus_asinus
ENSPTRG00000000453	PUM1	100	99.306	ENSECAG00000021369	PUM1	100	99.075	Equus_caballus
ENSPTRG00000000453	PUM1	80	100.000	ENSEEUG00000003871	PUM1	75	100.000	Erinaceus_europaeus
ENSPTRG00000000453	PUM1	100	83.354	ENSELUG00000002409	pum1	95	93.237	Esox_lucius
ENSPTRG00000000453	PUM1	100	100.000	ENSFCAG00000010374	PUM1	100	100.000	Felis_catus
ENSPTRG00000000453	PUM1	100	98.309	ENSFALG00000001214	PUM1	97	96.157	Ficedula_albicollis
ENSPTRG00000000453	PUM1	100	99.306	ENSFDAG00000011319	PUM1	100	99.306	Fukomys_damarensis
ENSPTRG00000000453	PUM1	91	91.084	ENSGMOG00000010491	pum1	94	90.602	Gadus_morhua
ENSPTRG00000000453	PUM1	100	98.309	ENSGALG00000042598	PUM1	100	97.896	Gallus_gallus
ENSPTRG00000000453	PUM1	100	80.941	ENSGAFG00000015617	pum1	100	90.361	Gambusia_affinis
ENSPTRG00000000453	PUM1	100	81.034	ENSGACG00000005717	pum1	94	90.843	Gasterosteus_aculeatus
ENSPTRG00000000453	PUM1	100	98.068	ENSGAGG00000001290	PUM1	99	98.583	Gopherus_agassizii
ENSPTRG00000000453	PUM1	100	100.000	ENSGGOG00000011983	PUM1	100	100.000	Gorilla_gorilla
ENSPTRG00000000453	PUM1	100	81.064	ENSHBUG00000018718	pum1	100	76.364	Haplochromis_burtoni
ENSPTRG00000000453	PUM1	100	99.084	ENSHGLG00000013819	Pum1	100	99.084	Heterocephalus_glaber_female
ENSPTRG00000000453	PUM1	100	99.084	ENSHGLG00100008621	Pum1	100	99.084	Heterocephalus_glaber_male
ENSPTRG00000000453	PUM1	100	92.029	ENSIPUG00000020421	pum1	93	92.029	Ictalurus_punctatus
ENSPTRG00000000453	PUM1	100	100.000	ENSSTOG00000010757	PUM1	100	100.000	Ictidomys_tridecemlineatus
ENSPTRG00000000453	PUM1	100	100.000	ENSJJAG00000000530	Pum1	100	100.000	Jaculus_jaculus
ENSPTRG00000000453	PUM1	100	90.843	ENSKMAG00000003481	pum1	94	90.361	Kryptolebias_marmoratus
ENSPTRG00000000453	PUM1	100	91.566	ENSLBEG00000002527	pum1	94	91.084	Labrus_bergylta
ENSPTRG00000000453	PUM1	100	88.724	ENSLACG00000017188	PUM1	99	86.711	Latimeria_chalumnae
ENSPTRG00000000453	PUM1	100	96.377	ENSLOCG00000005210	pum1	95	96.377	Lepisosteus_oculatus
ENSPTRG00000000453	PUM1	100	98.659	ENSLAFG00000003178	PUM1	100	98.907	Loxodonta_africana
ENSPTRG00000000453	PUM1	100	100.000	ENSMFAG00000010291	PUM1	100	100.000	Macaca_fascicularis
ENSPTRG00000000453	PUM1	100	100.000	ENSMMUG00000013520	PUM1	100	100.000	Macaca_mulatta
ENSPTRG00000000453	PUM1	100	100.000	ENSMNEG00000034639	PUM1	100	100.000	Macaca_nemestrina
ENSPTRG00000000453	PUM1	100	100.000	ENSMLEG00000038743	PUM1	100	100.000	Mandrillus_leucophaeus
ENSPTRG00000000453	PUM1	100	91.325	ENSMAMG00000011606	pum1	94	90.843	Mastacembelus_armatus
ENSPTRG00000000453	PUM1	100	81.064	ENSMZEG00005005834	pum1	100	76.364	Maylandia_zebra
ENSPTRG00000000453	PUM1	100	98.309	ENSMGAG00000000724	PUM1	100	97.621	Meleagris_gallopavo
ENSPTRG00000000453	PUM1	100	99.306	ENSMAUG00000022090	Pum1	100	99.306	Mesocricetus_auratus
ENSPTRG00000000453	PUM1	100	99.665	ENSMICG00000007713	-	100	99.665	Microcebus_murinus
ENSPTRG00000000453	PUM1	100	97.022	ENSMICG00000012213	-	100	97.022	Microcebus_murinus
ENSPTRG00000000453	PUM1	100	98.901	ENSMOCG00000015463	Pum1	100	98.907	Microtus_ochrogaster
ENSPTRG00000000453	PUM1	90	88.276	ENSMMOG00000019817	pum1	100	90.843	Mola_mola
ENSPTRG00000000453	PUM1	100	97.799	ENSMODG00000017067	PUM1	100	97.899	Monodelphis_domestica
ENSPTRG00000000453	PUM1	90	88.506	ENSMALG00000016399	pum1	100	91.084	Monopterus_albus
ENSPTRG00000000453	PUM1	100	99.272	MGP_CAROLIEiJ_G0026549	Pum1	100	98.737	Mus_caroli
ENSPTRG00000000453	PUM1	100	99.515	ENSMUSG00000028580	Pum1	100	99.306	Mus_musculus
ENSPTRG00000000453	PUM1	100	99.515	MGP_PahariEiJ_G0028881	Pum1	100	99.306	Mus_pahari
ENSPTRG00000000453	PUM1	100	99.515	MGP_SPRETEiJ_G0027529	Pum1	100	99.306	Mus_spretus
ENSPTRG00000000453	PUM1	100	100.000	ENSMPUG00000015454	PUM1	100	99.327	Mustela_putorius_furo
ENSPTRG00000000453	PUM1	100	100.000	ENSMLUG00000006490	PUM1	100	99.159	Myotis_lucifugus
ENSPTRG00000000453	PUM1	100	99.364	ENSNGAG00000002378	Pum1	100	99.364	Nannospalax_galili
ENSPTRG00000000453	PUM1	100	78.452	ENSNBRG00000010689	pum1	100	83.457	Neolamprologus_brichardi
ENSPTRG00000000453	PUM1	100	99.306	ENSNLEG00000001151	PUM1	100	99.306	Nomascus_leucogenys
ENSPTRG00000000453	PUM1	84	96.959	ENSMEUG00000000976	-	82	96.959	Notamacropus_eugenii
ENSPTRG00000000453	PUM1	84	100.000	ENSOPRG00000001776	PUM1	73	100.000	Ochotona_princeps
ENSPTRG00000000453	PUM1	100	99.176	ENSODEG00000003465	PUM1	100	99.242	Octodon_degus
ENSPTRG00000000453	PUM1	100	91.325	ENSONIG00000002290	pum1	94	90.843	Oreochromis_niloticus
ENSPTRG00000000453	PUM1	80	83.269	ENSOANG00000004902	-	100	77.835	Ornithorhynchus_anatinus
ENSPTRG00000000453	PUM1	100	100.000	ENSOCUG00000008641	PUM1	99	98.823	Oryctolagus_cuniculus
ENSPTRG00000000453	PUM1	100	81.931	ENSORLG00000011482	pum1	94	90.602	Oryzias_latipes
ENSPTRG00000000453	PUM1	100	93.012	ENSORLG00020019461	pum1	94	90.602	Oryzias_latipes_hni
ENSPTRG00000000453	PUM1	100	82.054	ENSORLG00015011375	pum1	94	90.602	Oryzias_latipes_hsok
ENSPTRG00000000453	PUM1	90	92.771	ENSOMEG00000009312	pum1	100	76.846	Oryzias_melastigma
ENSPTRG00000000453	PUM1	100	99.306	ENSOGAG00000011063	PUM1	100	96.893	Otolemur_garnettii
ENSPTRG00000000453	PUM1	100	100.000	ENSOARG00000001899	PUM1	100	99.549	Ovis_aries
ENSPTRG00000000453	PUM1	100	100.000	ENSPPAG00000044003	PUM1	100	100.000	Pan_paniscus
ENSPTRG00000000453	PUM1	100	100.000	ENSPPRG00000001370	PUM1	100	100.000	Panthera_pardus
ENSPTRG00000000453	PUM1	100	100.000	ENSPTIG00000010798	PUM1	100	100.000	Panthera_tigris_altaica
ENSPTRG00000000453	PUM1	100	100.000	ENSPANG00000016338	PUM1	100	100.000	Papio_anubis
ENSPTRG00000000453	PUM1	94	93.932	ENSPKIG00000010578	pum1	100	78.383	Paramormyrops_kingsleyae
ENSPTRG00000000453	PUM1	100	98.130	ENSPSIG00000014118	PUM1	100	97.980	Pelodiscus_sinensis
ENSPTRG00000000453	PUM1	100	76.819	ENSPMGG00000005836	pum1	100	81.907	Periophthalmus_magnuspinnatus
ENSPTRG00000000453	PUM1	100	99.306	ENSPEMG00000010009	Pum1	100	99.306	Peromyscus_maniculatus_bairdii
ENSPTRG00000000453	PUM1	100	98.008	ENSPCIG00000014151	PUM1	100	98.134	Phascolarctos_cinereus
ENSPTRG00000000453	PUM1	94	90.843	ENSPFOG00000007289	pum1	93	90.361	Poecilia_formosa
ENSPTRG00000000453	PUM1	100	90.843	ENSPLAG00000007256	pum1	94	90.361	Poecilia_latipinna
ENSPTRG00000000453	PUM1	89	90.843	ENSPMEG00000019543	pum1	92	90.361	Poecilia_mexicana
ENSPTRG00000000453	PUM1	100	80.941	ENSPREG00000005195	pum1	100	80.970	Poecilia_reticulata
ENSPTRG00000000453	PUM1	100	100.000	ENSPPYG00000001621	PUM1	100	98.020	Pongo_abelii
ENSPTRG00000000453	PUM1	84	99.383	ENSPCAG00000001979	PUM1	74	99.383	Procavia_capensis
ENSPTRG00000000453	PUM1	100	99.639	ENSPCOG00000004398	PUM1	100	99.639	Propithecus_coquereli
ENSPTRG00000000453	PUM1	100	100.000	ENSPVAG00000005207	PUM1	97	97.481	Pteropus_vampyrus
ENSPTRG00000000453	PUM1	100	81.064	ENSPNYG00000009518	pum1	100	81.446	Pundamilia_nyererei
ENSPTRG00000000453	PUM1	100	92.995	ENSPNAG00000026728	pum1	95	92.995	Pygocentrus_nattereri
ENSPTRG00000000453	PUM1	100	99.515	ENSRNOG00000011709	Pum1	100	98.822	Rattus_norvegicus
ENSPTRG00000000453	PUM1	100	100.000	ENSRBIG00000042521	PUM1	100	100.000	Rhinopithecus_bieti
ENSPTRG00000000453	PUM1	100	100.000	ENSRROG00000020156	PUM1	100	100.000	Rhinopithecus_roxellana
ENSPTRG00000000453	PUM1	100	100.000	ENSSBOG00000032037	PUM1	100	100.000	Saimiri_boliviensis_boliviensis
ENSPTRG00000000453	PUM1	100	97.799	ENSSHAG00000010918	PUM1	100	97.815	Sarcophilus_harrisii
ENSPTRG00000000453	PUM1	100	91.566	ENSSMAG00000010918	pum1	100	91.084	Scophthalmus_maximus
ENSPTRG00000000453	PUM1	100	91.566	ENSSDUG00000009021	pum1	94	91.084	Seriola_dumerili
ENSPTRG00000000453	PUM1	95	91.566	ENSSLDG00000009667	pum1	93	91.084	Seriola_lalandi_dorsalis
ENSPTRG00000000453	PUM1	99	100.000	ENSSARG00000003055	PUM1	94	98.206	Sorex_araneus
ENSPTRG00000000453	PUM1	100	98.309	ENSSPUG00000006267	PUM1	100	97.306	Sphenodon_punctatus
ENSPTRG00000000453	PUM1	90	91.566	ENSSPAG00000016636	pum1	94	91.084	Stegastes_partitus
ENSPTRG00000000453	PUM1	100	100.000	ENSSSCG00000003591	PUM1	100	100.000	Sus_scrofa
ENSPTRG00000000453	PUM1	100	91.566	ENSTRUG00000013121	pum1	94	91.084	Takifugu_rubripes
ENSPTRG00000000453	PUM1	100	91.346	ENSTNIG00000016983	pum1	93	90.865	Tetraodon_nigroviridis
ENSPTRG00000000453	PUM1	93	96.341	ENSTBEG00000013810	PUM1	89	96.341	Tupaia_belangeri
ENSPTRG00000000453	PUM1	92	99.001	ENSTTRG00000007436	PUM1	90	99.453	Tursiops_truncatus
ENSPTRG00000000453	PUM1	99	99.026	ENSUAMG00000018262	-	100	99.077	Ursus_americanus
ENSPTRG00000000453	PUM1	100	99.189	ENSUMAG00000009211	PUM1	100	99.758	Ursus_maritimus
ENSPTRG00000000453	PUM1	100	99.306	ENSVPAG00000005902	PUM1	92	99.664	Vicugna_pacos
ENSPTRG00000000453	PUM1	100	100.000	ENSVVUG00000014631	PUM1	100	99.758	Vulpes_vulpes
ENSPTRG00000000453	PUM1	100	88.944	ENSXETG00000012904	pum1	99	87.688	Xenopus_tropicalis
ENSPTRG00000000453	PUM1	100	90.843	ENSXMAG00000002945	pum1	94	90.361	Xiphophorus_maculatus