EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000000948 (Gene tree)
Gene ID: 469233
Gene Symbol: HFM1
Alias: -
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 154603 bases
Position: chr1:91732589-91887191
Accession: 11450
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000057235	ResIII	PF04851.15	1.4e-11	1	1
ENSPTRP00000057235	DEAD	PF00270.29	3.4e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000065671	-	5215	XM_016922338	ENSPTRP00000057235	1435 (aa)	XP_016777827	H2RCF9

Gene Model

Click here to download ENSPTRG00000000948's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000000948's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000000948	HFM1	61	31.488	ENSPTRG00000012230	SNRNP200	77	31.488
ENSPTRG00000000948	HFM1	51	34.637	ENSPTRG00000018448	ASCC3	63	34.637

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000000948	HFM1	100	99.303	ENSG00000162669	HFM1	100	100.000	Homo_sapiens
ENSPTRG00000000948	HFM1	63	65.765	ENSAPOG00000005304	hfm1	100	65.765	Acanthochromis_polyacanthus
ENSPTRG00000000948	HFM1	100	86.518	ENSAMEG00000000432	HFM1	100	86.518	Ailuropoda_melanoleuca
ENSPTRG00000000948	HFM1	70	60.704	ENSACIG00000021553	hfm1	91	60.704	Amphilophus_citrinellus
ENSPTRG00000000948	HFM1	63	66.121	ENSAOCG00000022839	hfm1	100	66.121	Amphiprion_ocellaris
ENSPTRG00000000948	HFM1	63	65.771	ENSAPEG00000014316	hfm1	100	65.771	Amphiprion_percula
ENSPTRG00000000948	HFM1	67	64.499	ENSATEG00000019181	hfm1	80	63.646	Anabas_testudineus
ENSPTRG00000000948	HFM1	100	60.507	ENSAPLG00000013639	HFM1	100	60.507	Anas_platyrhynchos
ENSPTRG00000000948	HFM1	100	91.858	ENSANAG00000029513	HFM1	100	91.858	Aotus_nancymaae
ENSPTRG00000000948	HFM1	65	63.841	ENSACLG00000009033	hfm1	97	65.435	Astatotilapia_calliptera
ENSPTRG00000000948	HFM1	93	52.273	ENSAMXG00000006108	hfm1	90	52.273	Astyanax_mexicanus
ENSPTRG00000000948	HFM1	100	85.417	ENSBTAG00000020856	HFM1	100	85.417	Bos_taurus
ENSPTRG00000000948	HFM1	100	93.868	ENSCJAG00000001843	HFM1	100	93.868	Callithrix_jacchus
ENSPTRG00000000948	HFM1	100	86.101	ENSCAFG00000020187	HFM1	100	86.101	Canis_familiaris
ENSPTRG00000000948	HFM1	100	87.352	ENSTSYG00000014250	HFM1	100	87.352	Carlito_syrichta
ENSPTRG00000000948	HFM1	99	78.984	ENSCPOG00000007421	HFM1	99	78.984	Cavia_porcellus
ENSPTRG00000000948	HFM1	100	93.659	ENSCCAG00000033206	HFM1	100	93.659	Cebus_capucinus
ENSPTRG00000000948	HFM1	100	96.655	ENSCATG00000030987	HFM1	100	96.655	Cercocebus_atys
ENSPTRG00000000948	HFM1	100	81.242	ENSCLAG00000005173	HFM1	99	81.242	Chinchilla_lanigera
ENSPTRG00000000948	HFM1	68	94.737	ENSCHOG00000011824	-	77	94.737	Choloepus_hoffmanni
ENSPTRG00000000948	HFM1	100	74.015	ENSCGRG00001016995	Hfm1	100	74.015	Cricetulus_griseus_chok1gshd
ENSPTRG00000000948	HFM1	100	78.249	ENSCGRG00000017181	Hfm1	100	78.249	Cricetulus_griseus_crigri
ENSPTRG00000000948	HFM1	70	60.815	ENSCSEG00000017659	hfm1	93	60.815	Cynoglossus_semilaevis
ENSPTRG00000000948	HFM1	50	69.382	ENSCVAG00000005075	hfm1	86	69.382	Cyprinodon_variegatus
ENSPTRG00000000948	HFM1	60	66.472	ENSDARG00000104288	hfm1	77	66.472	Danio_rerio
ENSPTRG00000000948	HFM1	100	81.334	ENSDNOG00000004776	HFM1	100	81.334	Dasypus_novemcinctus
ENSPTRG00000000948	HFM1	100	78.984	ENSDORG00000014661	Hfm1	100	78.984	Dipodomys_ordii
ENSPTRG00000000948	HFM1	70	85.587	ENSEASG00005015424	HFM1	98	85.652	Equus_asinus_asinus
ENSPTRG00000000948	HFM1	100	85.051	ENSECAG00000024039	HFM1	100	85.051	Equus_caballus
ENSPTRG00000000948	HFM1	64	66.859	ENSELUG00000018944	hfm1	99	66.859	Esox_lucius
ENSPTRG00000000948	HFM1	100	86.389	ENSFCAG00000029116	HFM1	100	86.389	Felis_catus
ENSPTRG00000000948	HFM1	100	60.247	ENSFALG00000001781	HFM1	100	60.663	Ficedula_albicollis
ENSPTRG00000000948	HFM1	100	79.718	ENSFDAG00000020816	HFM1	100	79.718	Fukomys_damarensis
ENSPTRG00000000948	HFM1	66	60.833	ENSGMOG00000017436	hfm1	100	60.833	Gadus_morhua
ENSPTRG00000000948	HFM1	71	62.209	ENSGAFG00000018093	hfm1	93	67.391	Gambusia_affinis
ENSPTRG00000000948	HFM1	66	62.422	ENSGACG00000015686	hfm1	100	62.422	Gasterosteus_aculeatus
ENSPTRG00000000948	HFM1	100	98.815	ENSGGOG00000038524	HFM1	100	98.815	Gorilla_gorilla
ENSPTRG00000000948	HFM1	65	64.914	ENSHBUG00000007309	hfm1	96	60.057	Haplochromis_burtoni
ENSPTRG00000000948	HFM1	57	64.338	ENSHCOG00000019632	hfm1	97	64.338	Hippocampus_comes
ENSPTRG00000000948	HFM1	66	64.842	ENSIPUG00000017020	hfm1	92	65.952	Ictalurus_punctatus
ENSPTRG00000000948	HFM1	100	78.288	ENSJJAG00000017198	Hfm1	100	78.288	Jaculus_jaculus
ENSPTRG00000000948	HFM1	62	63.858	ENSKMAG00000002282	hfm1	90	63.929	Kryptolebias_marmoratus
ENSPTRG00000000948	HFM1	70	60.707	ENSLBEG00000006759	hfm1	98	65.299	Labrus_bergylta
ENSPTRG00000000948	HFM1	66	70.971	ENSLACG00000010698	HFM1	99	67.109	Latimeria_chalumnae
ENSPTRG00000000948	HFM1	72	64.661	ENSLOCG00000004931	hfm1	96	64.756	Lepisosteus_oculatus
ENSPTRG00000000948	HFM1	52	90.040	ENSLAFG00000015903	-	99	90.040	Loxodonta_africana
ENSPTRG00000000948	HFM1	100	93.199	ENSMFAG00000003649	HFM1	100	93.199	Macaca_fascicularis
ENSPTRG00000000948	HFM1	100	96.167	ENSMMUG00000006819	HFM1	100	96.167	Macaca_mulatta
ENSPTRG00000000948	HFM1	54	70.769	ENSMAMG00000004623	hfm1	97	67.029	Mastacembelus_armatus
ENSPTRG00000000948	HFM1	65	63.841	ENSMZEG00005004679	hfm1	97	65.435	Maylandia_zebra
ENSPTRG00000000948	HFM1	54	77.679	ENSMGAG00000008437	HFM1	98	77.679	Meleagris_gallopavo
ENSPTRG00000000948	HFM1	100	78.056	ENSMAUG00000018858	Hfm1	100	78.056	Mesocricetus_auratus
ENSPTRG00000000948	HFM1	100	88.742	ENSMICG00000037935	HFM1	100	88.742	Microcebus_murinus
ENSPTRG00000000948	HFM1	100	76.217	ENSMOCG00000014812	Hfm1	100	76.217	Microtus_ochrogaster
ENSPTRG00000000948	HFM1	62	64.462	ENSMMOG00000006148	hfm1	94	65.018	Mola_mola
ENSPTRG00000000948	HFM1	65	64.461	ENSMALG00000002401	hfm1	94	67.148	Monopterus_albus
ENSPTRG00000000948	HFM1	94	72.165	MGP_CAROLIEiJ_G0027496	Hfm1	100	72.165	Mus_caroli
ENSPTRG00000000948	HFM1	100	76.843	ENSMUSG00000043410	Hfm1	100	76.843	Mus_musculus
ENSPTRG00000000948	HFM1	100	76.982	MGP_PahariEiJ_G0017268	Hfm1	100	76.982	Mus_pahari
ENSPTRG00000000948	HFM1	100	76.495	MGP_SPRETEiJ_G0028495	Hfm1	100	76.495	Mus_spretus
ENSPTRG00000000948	HFM1	100	82.559	ENSMPUG00000004594	HFM1	100	82.559	Mustela_putorius_furo
ENSPTRG00000000948	HFM1	100	83.969	ENSMLUG00000010200	HFM1	100	83.969	Myotis_lucifugus
ENSPTRG00000000948	HFM1	65	60.665	ENSNBRG00000002910	hfm1	97	65.818	Neolamprologus_brichardi
ENSPTRG00000000948	HFM1	100	93.737	ENSNLEG00000010285	HFM1	100	93.737	Nomascus_leucogenys
ENSPTRG00000000948	HFM1	84	66.667	ENSMEUG00000015788	HFM1	84	66.667	Notamacropus_eugenii
ENSPTRG00000000948	HFM1	84	78.778	ENSOPRG00000013916	HFM1	84	78.778	Ochotona_princeps
ENSPTRG00000000948	HFM1	71	62.598	ENSONIG00000010590	hfm1	99	62.548	Oreochromis_niloticus
ENSPTRG00000000948	HFM1	57	66.052	ENSORLG00000026844	hfm1	99	66.052	Oryzias_latipes
ENSPTRG00000000948	HFM1	85	49.279	ENSORLG00020002951	hfm1	96	49.435	Oryzias_latipes_hni
ENSPTRG00000000948	HFM1	89	52.332	ENSOMEG00000016474	hfm1	90	52.332	Oryzias_melastigma
ENSPTRG00000000948	HFM1	85	88.681	ENSOGAG00000032369	HFM1	100	88.681	Otolemur_garnettii
ENSPTRG00000000948	HFM1	100	85.635	ENSOARG00000015812	HFM1	100	85.635	Ovis_aries
ENSPTRG00000000948	HFM1	92	99.698	ENSPPAG00000024582	HFM1	100	99.698	Pan_paniscus
ENSPTRG00000000948	HFM1	100	86.319	ENSPPRG00000003270	HFM1	100	86.319	Panthera_pardus
ENSPTRG00000000948	HFM1	100	86.389	ENSPTIG00000018881	HFM1	100	86.389	Panthera_tigris_altaica
ENSPTRG00000000948	HFM1	100	96.516	ENSPANG00000009838	HFM1	100	96.516	Papio_anubis
ENSPTRG00000000948	HFM1	62	67.640	ENSPKIG00000003810	hfm1	95	67.995	Paramormyrops_kingsleyae
ENSPTRG00000000948	HFM1	58	66.385	ENSPMGG00000011059	hfm1	100	66.385	Periophthalmus_magnuspinnatus
ENSPTRG00000000948	HFM1	100	80.111	ENSPEMG00000022852	Hfm1	100	80.111	Peromyscus_maniculatus_bairdii
ENSPTRG00000000948	HFM1	100	67.023	ENSPCIG00000014233	HFM1	100	67.023	Phascolarctos_cinereus
ENSPTRG00000000948	HFM1	70	62.830	ENSPFOG00000017194	hfm1	99	62.830	Poecilia_formosa
ENSPTRG00000000948	HFM1	71	64.202	ENSPLAG00000000571	hfm1	92	64.202	Poecilia_latipinna
ENSPTRG00000000948	HFM1	71	64.306	ENSPMEG00000019475	hfm1	92	64.306	Poecilia_mexicana
ENSPTRG00000000948	HFM1	70	63.815	ENSPREG00000007803	hfm1	93	67.110	Poecilia_reticulata
ENSPTRG00000000948	HFM1	100	98.397	ENSPPYG00000001163	HFM1	100	98.397	Pongo_abelii
ENSPTRG00000000948	HFM1	74	82.432	ENSPCAG00000004289	-	74	82.432	Procavia_capensis
ENSPTRG00000000948	HFM1	100	78.079	ENSPVAG00000009713	HFM1	100	78.079	Pteropus_vampyrus
ENSPTRG00000000948	HFM1	65	63.627	ENSPNYG00000001795	hfm1	97	65.316	Pundamilia_nyererei
ENSPTRG00000000948	HFM1	59	67.730	ENSPNAG00000010865	hfm1	84	67.730	Pygocentrus_nattereri
ENSPTRG00000000948	HFM1	100	76.147	ENSRNOG00000023299	Hfm1	100	76.147	Rattus_norvegicus
ENSPTRG00000000948	HFM1	100	96.446	ENSRROG00000045569	HFM1	100	96.446	Rhinopithecus_roxellana
ENSPTRG00000000948	HFM1	100	91.080	ENSSBOG00000027456	HFM1	100	91.080	Saimiri_boliviensis_boliviensis
ENSPTRG00000000948	HFM1	60	72.023	ENSSHAG00000014616	-	98	72.023	Sarcophilus_harrisii
ENSPTRG00000000948	HFM1	85	56.983	ENSSFOG00015020129	hfm1	93	56.983	Scleropages_formosus
ENSPTRG00000000948	HFM1	62	65.028	ENSSMAG00000006907	hfm1	87	65.028	Scophthalmus_maximus
ENSPTRG00000000948	HFM1	62	66.264	ENSSDUG00000011424	hfm1	100	66.264	Seriola_dumerili
ENSPTRG00000000948	HFM1	63	66.386	ENSSLDG00000016386	hfm1	100	66.386	Seriola_lalandi_dorsalis
ENSPTRG00000000948	HFM1	62	66.906	ENSSPAG00000001023	hfm1	100	66.906	Stegastes_partitus
ENSPTRG00000000948	HFM1	100	82.155	ENSSSCG00000006912	HFM1	100	82.155	Sus_scrofa
ENSPTRG00000000948	HFM1	66	75.340	ENSTGUG00000006172	HFM1	100	75.340	Taeniopygia_guttata
ENSPTRG00000000948	HFM1	100	82.639	ENSTTRG00000013933	HFM1	100	82.639	Tursiops_truncatus
ENSPTRG00000000948	HFM1	93	84.392	ENSVPAG00000011331	HFM1	93	84.392	Vicugna_pacos
ENSPTRG00000000948	HFM1	71	82.769	ENSVVUG00000020760	HFM1	99	82.769	Vulpes_vulpes
ENSPTRG00000000948	HFM1	58	67.184	ENSXMAG00000004178	hfm1	92	67.184	Xiphophorus_maculatus