EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000001004 (Gene tree)
Gene ID: 457057
Gene Symbol: RTCA
Alias: -
Full Name: RNA 3'-terminal phosphate cyclase
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 25542 bases
Position: chr1:100902432-100927973
Accession: 8099
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000087251	RTC	PF01137.21	1.2e-80	1	1
ENSPTRP00000001726	RTC	PF01137.21	3.9e-62	1	1
ENSPTRP00000001726	RTC_insert	PF05189.13	1.7e-24	1	1
ENSPTRP00000087251	RTC_insert	PF05189.13	2.5e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000001883	-	1649	XM_009426194	ENSPTRP00000001726	309 (aa)	XP_009424469	H2PZH5
ENSPTRT00000097657	-	1140	XM_001160984	ENSPTRP00000087251	379 (aa)	XP_001160984	A0A2I3TDH8

Gene Model

Click here to download ENSPTRG00000001004's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000001004's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000001004	RTCA	100	99.029	ENSG00000137996	RTCA	100	98.945	Homo_sapiens
ENSPTRG00000001004	RTCA	100	70.227	ENSAPOG00000001345	rtca	98	68.717	Acanthochromis_polyacanthus
ENSPTRG00000001004	RTCA	87	94.052	ENSAMEG00000008855	RTCA	100	94.052	Ailuropoda_melanoleuca
ENSPTRG00000001004	RTCA	100	70.874	ENSACIG00000019643	rtca	99	68.984	Amphilophus_citrinellus
ENSPTRG00000001004	RTCA	100	70.227	ENSAOCG00000014979	rtca	99	68.074	Amphiprion_ocellaris
ENSPTRG00000001004	RTCA	100	70.227	ENSAPEG00000006945	rtca	99	68.074	Amphiprion_percula
ENSPTRG00000001004	RTCA	100	70.227	ENSATEG00000006315	rtca	96	68.407	Anabas_testudineus
ENSPTRG00000001004	RTCA	100	81.553	ENSAPLG00000015430	RTCA	100	77.112	Anas_platyrhynchos
ENSPTRG00000001004	RTCA	100	97.411	ENSANAG00000025446	RTCA	100	96.306	Aotus_nancymaae
ENSPTRG00000001004	RTCA	100	69.903	ENSACLG00000020770	rtca	99	67.546	Astatotilapia_calliptera
ENSPTRG00000001004	RTCA	100	72.168	ENSAMXG00000043271	rtca	100	70.185	Astyanax_mexicanus
ENSPTRG00000001004	RTCA	100	95.146	ENSBTAG00000006321	RTCA	100	92.084	Bos_taurus
ENSPTRG00000001004	RTCA	100	97.087	ENSCJAG00000003398	RTCA	100	93.931	Callithrix_jacchus
ENSPTRG00000001004	RTCA	100	95.469	ENSCAFG00000020010	RTCA	68	92.084	Canis_familiaris
ENSPTRG00000001004	RTCA	100	95.469	ENSCAFG00020011528	RTCA	57	92.084	Canis_lupus_dingo
ENSPTRG00000001004	RTCA	100	94.822	ENSCHIG00000018937	RTCA	100	91.821	Capra_hircus
ENSPTRG00000001004	RTCA	100	92.233	ENSTSYG00000011305	RTCA	100	91.293	Carlito_syrichta
ENSPTRG00000001004	RTCA	100	96.764	ENSCCAG00000021844	RTCA	100	96.306	Cebus_capucinus
ENSPTRG00000001004	RTCA	100	98.153	ENSCATG00000019364	RTCA	100	98.153	Cercocebus_atys
ENSPTRG00000001004	RTCA	100	95.146	ENSCLAG00000006125	RTCA	100	95.268	Chinchilla_lanigera
ENSPTRG00000001004	RTCA	100	98.382	ENSCSAG00000001509	RTCA	100	94.987	Chlorocebus_sabaeus
ENSPTRG00000001004	RTCA	100	92.880	ENSCHOG00000005211	RTCA	100	89.710	Choloepus_hoffmanni
ENSPTRG00000001004	RTCA	100	82.524	ENSCPBG00000026658	RTCA	100	80.211	Chrysemys_picta_bellii
ENSPTRG00000001004	RTCA	100	55.161	ENSCING00000007875	-	98	54.011	Ciona_intestinalis
ENSPTRG00000001004	RTCA	100	52.427	ENSCSAVG00000007269	-	98	51.743	Ciona_savignyi
ENSPTRG00000001004	RTCA	100	98.153	ENSCANG00000040106	RTCA	100	98.153	Colobus_angolensis_palliatus
ENSPTRG00000001004	RTCA	87	90.706	ENSCGRG00001013163	Rtca	85	90.706	Cricetulus_griseus_chok1gshd
ENSPTRG00000001004	RTCA	100	68.608	ENSCSEG00000000530	rtca	98	66.138	Cynoglossus_semilaevis
ENSPTRG00000001004	RTCA	100	55.937	ENSCVAG00000021809	rtca	100	55.937	Cyprinodon_variegatus
ENSPTRG00000001004	RTCA	100	73.463	ENSDARG00000002215	rtca	100	70.976	Danio_rerio
ENSPTRG00000001004	RTCA	100	93.528	ENSDNOG00000000456	RTCA	100	90.237	Dasypus_novemcinctus
ENSPTRG00000001004	RTCA	100	91.586	ENSDORG00000005448	Rtca	100	88.918	Dipodomys_ordii
ENSPTRG00000001004	RTCA	98	37.466	FBgn0025630	Rtca	98	37.466	Drosophila_melanogaster
ENSPTRG00000001004	RTCA	96	52.329	ENSEBUG00000008556	rtca	97	52.329	Eptatretus_burgeri
ENSPTRG00000001004	RTCA	100	94.498	ENSEASG00005015926	RTCA	100	91.293	Equus_asinus_asinus
ENSPTRG00000001004	RTCA	100	94.498	ENSECAG00000019831	RTCA	100	91.293	Equus_caballus
ENSPTRG00000001004	RTCA	89	84.420	ENSEEUG00000001165	RTCA	100	82.370	Erinaceus_europaeus
ENSPTRG00000001004	RTCA	100	70.227	ENSELUG00000003741	rtca	99	69.251	Esox_lucius
ENSPTRG00000001004	RTCA	100	94.822	ENSFCAG00000024460	RTCA	100	91.645	Felis_catus
ENSPTRG00000001004	RTCA	89	83.696	ENSFALG00000002443	RTCA	90	80.636	Ficedula_albicollis
ENSPTRG00000001004	RTCA	98	74.098	ENSFDAG00000016084	-	100	71.733	Fukomys_damarensis
ENSPTRG00000001004	RTCA	100	95.469	ENSFDAG00000012070	-	100	91.821	Fukomys_damarensis
ENSPTRG00000001004	RTCA	68	70.616	ENSFHEG00000002868	rtca	90	70.673	Fundulus_heteroclitus
ENSPTRG00000001004	RTCA	100	68.285	ENSGMOG00000013264	rtca	100	65.963	Gadus_morhua
ENSPTRG00000001004	RTCA	100	81.553	ENSGALG00000005277	RTCA	100	79.683	Gallus_gallus
ENSPTRG00000001004	RTCA	100	70.874	ENSGAFG00000011853	rtca	99	68.338	Gambusia_affinis
ENSPTRG00000001004	RTCA	100	67.961	ENSGACG00000013497	rtca	100	66.227	Gasterosteus_aculeatus
ENSPTRG00000001004	RTCA	81	80.719	ENSGAGG00000023306	RTCA	100	80.719	Gopherus_agassizii
ENSPTRG00000001004	RTCA	100	98.058	ENSGGOG00000044018	-	100	94.723	Gorilla_gorilla
ENSPTRG00000001004	RTCA	100	99.029	ENSGGOG00000009546	-	100	99.029	Gorilla_gorilla
ENSPTRG00000001004	RTCA	100	69.579	ENSHBUG00000002114	rtca	99	67.282	Haplochromis_burtoni
ENSPTRG00000001004	RTCA	100	93.528	ENSHGLG00000002617	RTCA	100	90.501	Heterocephalus_glaber_female
ENSPTRG00000001004	RTCA	100	93.528	ENSHGLG00100006056	RTCA	100	90.501	Heterocephalus_glaber_male
ENSPTRG00000001004	RTCA	100	63.107	ENSHCOG00000020628	rtca	89	62.005	Hippocampus_comes
ENSPTRG00000001004	RTCA	100	72.492	ENSIPUG00000024803	rtca	100	70.449	Ictalurus_punctatus
ENSPTRG00000001004	RTCA	100	94.822	ENSSTOG00000013528	-	91	94.822	Ictidomys_tridecemlineatus
ENSPTRG00000001004	RTCA	100	84.466	ENSSTOG00000033099	-	100	80.526	Ictidomys_tridecemlineatus
ENSPTRG00000001004	RTCA	100	63.852	ENSJJAG00000016178	Rtca	100	63.852	Jaculus_jaculus
ENSPTRG00000001004	RTCA	100	70.550	ENSKMAG00000006651	rtca	98	68.984	Kryptolebias_marmoratus
ENSPTRG00000001004	RTCA	100	67.638	ENSLBEG00000028971	rtca	99	66.310	Labrus_bergylta
ENSPTRG00000001004	RTCA	100	67.638	ENSLBEG00000002448	-	98	68.239	Labrus_bergylta
ENSPTRG00000001004	RTCA	100	78.641	ENSLACG00000013666	RTCA	100	74.934	Latimeria_chalumnae
ENSPTRG00000001004	RTCA	100	72.168	ENSLOCG00000000093	rtca	99	70.185	Lepisosteus_oculatus
ENSPTRG00000001004	RTCA	100	92.880	ENSLAFG00000001473	RTCA	100	89.710	Loxodonta_africana
ENSPTRG00000001004	RTCA	100	98.417	ENSMFAG00000034132	RTCA	100	98.417	Macaca_fascicularis
ENSPTRG00000001004	RTCA	100	97.889	ENSMMUG00000019105	RTCA	100	97.889	Macaca_mulatta
ENSPTRG00000001004	RTCA	100	98.382	ENSMNEG00000037163	RTCA	100	98.382	Macaca_nemestrina
ENSPTRG00000001004	RTCA	100	81.003	ENSMLEG00000042151	RTCA	100	81.003	Mandrillus_leucophaeus
ENSPTRG00000001004	RTCA	100	72.492	ENSMAMG00000016536	rtca	100	69.921	Mastacembelus_armatus
ENSPTRG00000001004	RTCA	100	69.903	ENSMZEG00005017945	rtca	99	67.546	Maylandia_zebra
ENSPTRG00000001004	RTCA	100	80.583	ENSMGAG00000006892	RTCA	100	80.625	Meleagris_gallopavo
ENSPTRG00000001004	RTCA	100	90.615	ENSMAUG00000008488	Rtca	100	88.127	Mesocricetus_auratus
ENSPTRG00000001004	RTCA	100	95.793	ENSMICG00000008643	RTCA	100	95.793	Microcebus_murinus
ENSPTRG00000001004	RTCA	100	91.262	ENSMOCG00000016660	Rtca	100	88.391	Microtus_ochrogaster
ENSPTRG00000001004	RTCA	100	70.550	ENSMMOG00000007750	rtca	100	70.550	Mola_mola
ENSPTRG00000001004	RTCA	100	89.320	ENSMODG00000003557	RTCA	100	86.807	Monodelphis_domestica
ENSPTRG00000001004	RTCA	100	71.845	ENSMALG00000020844	rtca	100	69.393	Monopterus_albus
ENSPTRG00000001004	RTCA	100	90.615	MGP_CAROLIEiJ_G0025565	Rtca	100	90.845	Mus_caroli
ENSPTRG00000001004	RTCA	100	89.968	ENSMUSG00000000339	Rtca	100	90.845	Mus_musculus
ENSPTRG00000001004	RTCA	100	90.291	MGP_PahariEiJ_G0027011	Rtca	100	90.141	Mus_pahari
ENSPTRG00000001004	RTCA	100	90.291	MGP_SPRETEiJ_G0026515	Rtca	100	90.141	Mus_spretus
ENSPTRG00000001004	RTCA	100	95.469	ENSMPUG00000012119	RTCA	100	91.821	Mustela_putorius_furo
ENSPTRG00000001004	RTCA	100	87.379	ENSMLUG00000009922	RTCA	100	83.684	Myotis_lucifugus
ENSPTRG00000001004	RTCA	100	90.939	ENSNGAG00000011540	Rtca	99	88.391	Nannospalax_galili
ENSPTRG00000001004	RTCA	100	69.903	ENSNBRG00000003062	rtca	99	67.546	Neolamprologus_brichardi
ENSPTRG00000001004	RTCA	100	99.029	ENSNLEG00000031426	RTCA	100	98.945	Nomascus_leucogenys
ENSPTRG00000001004	RTCA	77	71.875	ENSMEUG00000010030	-	77	71.875	Notamacropus_eugenii
ENSPTRG00000001004	RTCA	87	87.361	ENSOPRG00000012092	RTCA	71	87.361	Ochotona_princeps
ENSPTRG00000001004	RTCA	100	94.175	ENSODEG00000006990	RTCA	96	90.934	Octodon_degus
ENSPTRG00000001004	RTCA	100	69.579	ENSONIG00000007753	rtca	99	67.282	Oreochromis_niloticus
ENSPTRG00000001004	RTCA	100	86.408	ENSOANG00000012055	RTCA	99	84.242	Ornithorhynchus_anatinus
ENSPTRG00000001004	RTCA	100	95.469	ENSOCUG00000014247	RTCA	100	91.821	Oryctolagus_cuniculus
ENSPTRG00000001004	RTCA	100	69.579	ENSORLG00000013605	rtca	100	67.546	Oryzias_latipes
ENSPTRG00000001004	RTCA	100	69.579	ENSORLG00020001904	rtca	100	67.546	Oryzias_latipes_hni
ENSPTRG00000001004	RTCA	100	69.579	ENSORLG00015021064	rtca	100	67.546	Oryzias_latipes_hsok
ENSPTRG00000001004	RTCA	100	70.550	ENSOMEG00000000756	rtca	100	68.074	Oryzias_melastigma
ENSPTRG00000001004	RTCA	99	85.714	ENSOGAG00000005627	RTCA	100	81.794	Otolemur_garnettii
ENSPTRG00000001004	RTCA	100	94.175	ENSOARG00000018122	RTCA	100	94.340	Ovis_aries
ENSPTRG00000001004	RTCA	100	99.472	ENSPPAG00000035119	RTCA	100	99.472	Pan_paniscus
ENSPTRG00000001004	RTCA	100	94.822	ENSPPRG00000000350	RTCA	100	91.645	Panthera_pardus
ENSPTRG00000001004	RTCA	100	94.498	ENSPTIG00000012816	RTCA	100	91.384	Panthera_tigris_altaica
ENSPTRG00000001004	RTCA	100	97.735	ENSPANG00000000346	RTCA	100	94.195	Papio_anubis
ENSPTRG00000001004	RTCA	100	73.463	ENSPKIG00000001653	rtca	100	70.976	Paramormyrops_kingsleyae
ENSPTRG00000001004	RTCA	100	83.172	ENSPSIG00000011408	RTCA	100	80.739	Pelodiscus_sinensis
ENSPTRG00000001004	RTCA	100	90.291	ENSPEMG00000018582	Rtca	100	87.599	Peromyscus_maniculatus_bairdii
ENSPTRG00000001004	RTCA	100	56.316	ENSPMAG00000009110	rtca	100	56.316	Petromyzon_marinus
ENSPTRG00000001004	RTCA	100	89.644	ENSPCIG00000007684	RTCA	100	87.071	Phascolarctos_cinereus
ENSPTRG00000001004	RTCA	100	71.521	ENSPFOG00000004824	rtca	100	69.129	Poecilia_formosa
ENSPTRG00000001004	RTCA	100	71.521	ENSPLAG00000011753	rtca	99	68.865	Poecilia_latipinna
ENSPTRG00000001004	RTCA	100	71.521	ENSPMEG00000020469	rtca	99	68.865	Poecilia_mexicana
ENSPTRG00000001004	RTCA	100	72.492	ENSPREG00000001365	rtca	99	69.657	Poecilia_reticulata
ENSPTRG00000001004	RTCA	100	98.706	ENSPPYG00000001115	RTCA	100	95.251	Pongo_abelii
ENSPTRG00000001004	RTCA	100	89.968	ENSPCAG00000005076	RTCA	100	87.071	Procavia_capensis
ENSPTRG00000001004	RTCA	100	96.440	ENSPCOG00000005603	RTCA	100	92.876	Propithecus_coquereli
ENSPTRG00000001004	RTCA	100	93.204	ENSPVAG00000009478	RTCA	100	92.876	Pteropus_vampyrus
ENSPTRG00000001004	RTCA	100	69.903	ENSPNYG00000004722	rtca	99	67.546	Pundamilia_nyererei
ENSPTRG00000001004	RTCA	100	72.816	ENSPNAG00000022270	rtca	100	70.185	Pygocentrus_nattereri
ENSPTRG00000001004	RTCA	100	90.291	ENSRNOG00000014575	Rtca	100	87.599	Rattus_norvegicus
ENSPTRG00000001004	RTCA	100	97.625	ENSRBIG00000041180	RTCA	100	97.625	Rhinopithecus_bieti
ENSPTRG00000001004	RTCA	100	97.625	ENSRROG00000024929	RTCA	100	97.625	Rhinopithecus_roxellana
ENSPTRG00000001004	RTCA	100	96.764	ENSSBOG00000028626	RTCA	100	95.515	Saimiri_boliviensis_boliviensis
ENSPTRG00000001004	RTCA	100	89.320	ENSSHAG00000001758	RTCA	100	86.807	Sarcophilus_harrisii
ENSPTRG00000001004	RTCA	100	67.961	ENSSMAG00000014680	rtca	97	66.220	Scophthalmus_maximus
ENSPTRG00000001004	RTCA	100	70.550	ENSSDUG00000015585	rtca	97	68.365	Seriola_dumerili
ENSPTRG00000001004	RTCA	100	70.227	ENSSLDG00000018985	rtca	95	68.407	Seriola_lalandi_dorsalis
ENSPTRG00000001004	RTCA	100	85.437	ENSSARG00000013993	RTCA	100	85.804	Sorex_araneus
ENSPTRG00000001004	RTCA	51	78.344	ENSSPUG00000016255	-	100	78.344	Sphenodon_punctatus
ENSPTRG00000001004	RTCA	100	69.579	ENSSPAG00000011938	rtca	99	67.282	Stegastes_partitus
ENSPTRG00000001004	RTCA	100	94.175	ENSSSCG00000006865	RTCA	100	91.293	Sus_scrofa
ENSPTRG00000001004	RTCA	100	82.524	ENSTGUG00000005154	RTCA	100	80.211	Taeniopygia_guttata
ENSPTRG00000001004	RTCA	100	70.227	ENSTRUG00000008799	rtca	100	67.810	Takifugu_rubripes
ENSPTRG00000001004	RTCA	100	69.903	ENSTNIG00000004725	rtca	100	68.338	Tetraodon_nigroviridis
ENSPTRG00000001004	RTCA	51	100.000	ENSTBEG00000000943	RTCA	82	66.387	Tupaia_belangeri
ENSPTRG00000001004	RTCA	100	93.404	ENSTTRG00000015327	RTCA	100	93.404	Tursiops_truncatus
ENSPTRG00000001004	RTCA	93	92.308	ENSUAMG00000017265	RTCA	96	89.607	Ursus_americanus
ENSPTRG00000001004	RTCA	100	94.175	ENSUMAG00000007881	RTCA	100	91.293	Ursus_maritimus
ENSPTRG00000001004	RTCA	100	85.113	ENSVPAG00000001039	RTCA	87	85.152	Vicugna_pacos
ENSPTRG00000001004	RTCA	100	95.146	ENSVVUG00000022041	RTCA	68	91.821	Vulpes_vulpes
ENSPTRG00000001004	RTCA	99	62.895	ENSXETG00000031661	RTCA	99	62.895	Xenopus_tropicalis
ENSPTRG00000001004	RTCA	100	60.194	ENSXCOG00000008002	rtca	100	59.631	Xiphophorus_couchianus
ENSPTRG00000001004	RTCA	100	71.197	ENSXMAG00000005482	rtca	99	68.602	Xiphophorus_maculatus