EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000002291 (Gene tree)
Gene ID: 450304
Gene Symbol: UPF2
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 123039 bases
Position: chr10:12201908-12324946
Accession: 14871
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000003873	Upf2	PF04050.14	9.5e-33	1	1
ENSPTRP00000088479	Upf2	PF04050.14	1.5e-32	1	1
ENSPTRP00000088479	MIF4G	PF02854.19	1.8e-80	1	3
ENSPTRP00000088479	MIF4G	PF02854.19	1.8e-80	2	3
ENSPTRP00000088479	MIF4G	PF02854.19	1.8e-80	3	3
ENSPTRP00000003873	MIF4G	PF02854.19	1.9e-80	1	3
ENSPTRP00000003873	MIF4G	PF02854.19	1.9e-80	2	3
ENSPTRP00000003873	MIF4G	PF02854.19	1.9e-80	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000004195	-	5364	XM_016962632	ENSPTRP00000003873	1272 (aa)	XP_016818121	H2Q1L9
ENSPTRT00000097841	-	3789	-	ENSPTRP00000088479	1262 (aa)	-	A0A2I3THW8

Gene Model

Click here to download ENSPTRG00000002291's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03013	RNA transport	KEGG
ptr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000002291's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000002291	UPF2	100	99.921	ENSG00000151461	UPF2	100	99.921	Homo_sapiens
ENSPTRG00000002291	UPF2	99	78.326	ENSAPOG00000015837	UPF2	100	78.169	Acanthochromis_polyacanthus
ENSPTRG00000002291	UPF2	100	97.720	ENSAMEG00000004586	UPF2	100	97.720	Ailuropoda_melanoleuca
ENSPTRG00000002291	UPF2	99	82.436	ENSACIG00000018078	UPF2	100	82.358	Amphilophus_citrinellus
ENSPTRG00000002291	UPF2	100	82.463	ENSAOCG00000016766	UPF2	100	82.541	Amphiprion_ocellaris
ENSPTRG00000002291	UPF2	100	82.541	ENSAPEG00000019084	UPF2	100	82.619	Amphiprion_percula
ENSPTRG00000002291	UPF2	100	82.284	ENSATEG00000021677	UPF2	99	82.490	Anabas_testudineus
ENSPTRG00000002291	UPF2	100	86.557	ENSAPLG00000010287	UPF2	100	86.085	Anas_platyrhynchos
ENSPTRG00000002291	UPF2	100	92.217	ENSACAG00000009259	UPF2	100	92.217	Anolis_carolinensis
ENSPTRG00000002291	UPF2	99	88.601	ENSANAG00000028451	UPF2	99	87.264	Aotus_nancymaae
ENSPTRG00000002291	UPF2	100	80.904	ENSACLG00000012696	UPF2	100	82.619	Astatotilapia_calliptera
ENSPTRG00000002291	UPF2	99	82.408	ENSAMXG00000013700	UPF2	99	82.799	Astyanax_mexicanus
ENSPTRG00000002291	UPF2	100	97.642	ENSBTAG00000000288	UPF2	100	97.642	Bos_taurus
ENSPTRG00000002291	UPF2	100	99.135	ENSCJAG00000020685	UPF2	100	99.135	Callithrix_jacchus
ENSPTRG00000002291	UPF2	100	97.720	ENSCAFG00000004839	UPF2	100	97.720	Canis_familiaris
ENSPTRG00000002291	UPF2	100	96.197	ENSCAFG00020005882	UPF2	100	96.197	Canis_lupus_dingo
ENSPTRG00000002291	UPF2	100	97.720	ENSCHIG00000020359	UPF2	100	97.720	Capra_hircus
ENSPTRG00000002291	UPF2	100	97.799	ENSTSYG00000000935	UPF2	100	97.799	Carlito_syrichta
ENSPTRG00000002291	UPF2	91	87.188	ENSCAPG00000016658	UPF2	100	86.204	Cavia_aperea
ENSPTRG00000002291	UPF2	99	93.978	ENSCPOG00000008809	UPF2	99	94.770	Cavia_porcellus
ENSPTRG00000002291	UPF2	100	93.632	ENSCCAG00000035991	UPF2	100	93.632	Cebus_capucinus
ENSPTRG00000002291	UPF2	100	99.686	ENSCATG00000032679	UPF2	100	99.686	Cercocebus_atys
ENSPTRG00000002291	UPF2	100	97.091	ENSCLAG00000011434	UPF2	100	97.091	Chinchilla_lanigera
ENSPTRG00000002291	UPF2	100	99.764	ENSCSAG00000013372	UPF2	100	99.764	Chlorocebus_sabaeus
ENSPTRG00000002291	UPF2	87	99.330	ENSCHOG00000000422	UPF2	89	99.330	Choloepus_hoffmanni
ENSPTRG00000002291	UPF2	99	92.598	ENSCPBG00000027823	UPF2	100	92.441	Chrysemys_picta_bellii
ENSPTRG00000002291	UPF2	79	48.963	ENSCSAVG00000007772	-	79	50.446	Ciona_savignyi
ENSPTRG00000002291	UPF2	100	96.437	ENSCANG00000040396	UPF2	100	96.437	Colobus_angolensis_palliatus
ENSPTRG00000002291	UPF2	100	97.327	ENSCGRG00001019347	Upf2	100	97.327	Cricetulus_griseus_chok1gshd
ENSPTRG00000002291	UPF2	100	97.327	ENSCGRG00000017993	Upf2	100	97.327	Cricetulus_griseus_crigri
ENSPTRG00000002291	UPF2	91	80.723	ENSCSEG00000003520	UPF2	91	80.206	Cynoglossus_semilaevis
ENSPTRG00000002291	UPF2	99	82.025	ENSCVAG00000006167	UPF2	100	81.790	Cyprinodon_variegatus
ENSPTRG00000002291	UPF2	100	97.720	ENSDNOG00000018160	UPF2	100	97.720	Dasypus_novemcinctus
ENSPTRG00000002291	UPF2	100	96.934	ENSDORG00000002478	Upf2	100	96.934	Dipodomys_ordii
ENSPTRG00000002291	UPF2	89	36.439	FBgn0029992	Upf2	82	43.860	Drosophila_melanogaster
ENSPTRG00000002291	UPF2	72	100.000	ENSETEG00000011583	-	72	100.000	Echinops_telfairi
ENSPTRG00000002291	UPF2	69	68.507	ENSEBUG00000012448	-	87	72.483	Eptatretus_burgeri
ENSPTRG00000002291	UPF2	100	97.877	ENSEASG00005019274	UPF2	100	99.383	Equus_asinus_asinus
ENSPTRG00000002291	UPF2	100	97.956	ENSECAG00000017022	UPF2	100	97.956	Equus_caballus
ENSPTRG00000002291	UPF2	82	95.208	ENSEEUG00000007819	UPF2	82	95.208	Erinaceus_europaeus
ENSPTRG00000002291	UPF2	99	81.499	ENSELUG00000012014	UPF2	100	81.366	Esox_lucius
ENSPTRG00000002291	UPF2	100	99.448	ENSFCAG00000005785	UPF2	100	97.563	Felis_catus
ENSPTRG00000002291	UPF2	100	91.274	ENSFALG00000001889	UPF2	98	93.082	Ficedula_albicollis
ENSPTRG00000002291	UPF2	100	96.934	ENSFDAG00000014348	UPF2	100	96.934	Fukomys_damarensis
ENSPTRG00000002291	UPF2	99	82.261	ENSFHEG00000009826	UPF2	100	82.154	Fundulus_heteroclitus
ENSPTRG00000002291	UPF2	91	83.938	ENSGMOG00000005557	UPF2	100	80.391	Gadus_morhua
ENSPTRG00000002291	UPF2	100	93.244	ENSGALG00000033772	UPF2	100	93.244	Gallus_gallus
ENSPTRG00000002291	UPF2	100	79.501	ENSGAFG00000020867	UPF2	100	81.528	Gambusia_affinis
ENSPTRG00000002291	UPF2	90	84.383	ENSGACG00000001080	UPF2	100	82.123	Gasterosteus_aculeatus
ENSPTRG00000002291	UPF2	100	92.767	ENSGAGG00000002700	UPF2	100	92.767	Gopherus_agassizii
ENSPTRG00000002291	UPF2	100	100.000	ENSGGOG00000001479	UPF2	100	100.000	Gorilla_gorilla
ENSPTRG00000002291	UPF2	100	80.748	ENSHBUG00000004249	UPF2	100	82.592	Haplochromis_burtoni
ENSPTRG00000002291	UPF2	100	97.013	ENSHGLG00000015176	-	100	97.013	Heterocephalus_glaber_female
ENSPTRG00000002291	UPF2	99	85.759	ENSHGLG00000003822	-	99	84.894	Heterocephalus_glaber_female
ENSPTRG00000002291	UPF2	99	92.913	ENSHGLG00100010036	UPF2	100	93.622	Heterocephalus_glaber_male
ENSPTRG00000002291	UPF2	100	80.528	ENSHCOG00000004025	UPF2	99	80.528	Hippocampus_comes
ENSPTRG00000002291	UPF2	100	81.450	ENSIPUG00000015524	UPF2	100	81.747	Ictalurus_punctatus
ENSPTRG00000002291	UPF2	100	97.406	ENSSTOG00000013075	UPF2	100	97.406	Ictidomys_tridecemlineatus
ENSPTRG00000002291	UPF2	100	96.305	ENSJJAG00000004913	Upf2	100	96.305	Jaculus_jaculus
ENSPTRG00000002291	UPF2	99	82.003	ENSKMAG00000001071	UPF2	100	82.275	Kryptolebias_marmoratus
ENSPTRG00000002291	UPF2	100	82.609	ENSLBEG00000016394	-	99	82.659	Labrus_bergylta
ENSPTRG00000002291	UPF2	80	82.041	ENSLBEG00000000728	-	93	82.139	Labrus_bergylta
ENSPTRG00000002291	UPF2	91	81.169	ENSLACG00000015945	UPF2	100	79.092	Latimeria_chalumnae
ENSPTRG00000002291	UPF2	99	84.488	ENSLOCG00000015698	UPF2	100	85.827	Lepisosteus_oculatus
ENSPTRG00000002291	UPF2	100	99.607	ENSMFAG00000043865	UPF2	100	99.607	Macaca_fascicularis
ENSPTRG00000002291	UPF2	100	99.607	ENSMMUG00000008241	UPF2	100	99.607	Macaca_mulatta
ENSPTRG00000002291	UPF2	81	99.220	ENSMNEG00000008062	UPF2	100	99.220	Macaca_nemestrina
ENSPTRG00000002291	UPF2	100	99.683	ENSMLEG00000036120	UPF2	100	100.000	Mandrillus_leucophaeus
ENSPTRG00000002291	UPF2	100	82.129	ENSMAMG00000018276	UPF2	100	82.257	Mastacembelus_armatus
ENSPTRG00000002291	UPF2	100	80.904	ENSMZEG00005021595	UPF2	100	82.619	Maylandia_zebra
ENSPTRG00000002291	UPF2	99	92.447	ENSMGAG00000004573	UPF2	99	92.683	Meleagris_gallopavo
ENSPTRG00000002291	UPF2	100	94.969	ENSMAUG00000016512	Upf2	100	94.969	Mesocricetus_auratus
ENSPTRG00000002291	UPF2	100	93.265	ENSMICG00000001716	UPF2	100	93.858	Microcebus_murinus
ENSPTRG00000002291	UPF2	100	96.698	ENSMOCG00000008263	Upf2	100	96.698	Microtus_ochrogaster
ENSPTRG00000002291	UPF2	99	79.859	ENSMMOG00000006528	UPF2	100	80.125	Mola_mola
ENSPTRG00000002291	UPF2	100	95.362	ENSMODG00000016794	UPF2	100	95.362	Monodelphis_domestica
ENSPTRG00000002291	UPF2	99	82.031	ENSMALG00000002663	UPF2	100	82.003	Monopterus_albus
ENSPTRG00000002291	UPF2	100	96.934	MGP_CAROLIEiJ_G0023157	Upf2	100	98.476	Mus_caroli
ENSPTRG00000002291	UPF2	100	96.934	ENSMUSG00000043241	Upf2	100	96.934	Mus_musculus
ENSPTRG00000002291	UPF2	100	96.541	MGP_PahariEiJ_G0019217	Upf2	100	97.524	Mus_pahari
ENSPTRG00000002291	UPF2	100	97.170	MGP_SPRETEiJ_G0024075	Upf2	100	97.905	Mus_spretus
ENSPTRG00000002291	UPF2	100	97.720	ENSMPUG00000001064	UPF2	100	97.720	Mustela_putorius_furo
ENSPTRG00000002291	UPF2	99	97.017	ENSMLUG00000000228	UPF2	100	97.017	Myotis_lucifugus
ENSPTRG00000002291	UPF2	100	80.904	ENSNBRG00000013629	UPF2	100	82.619	Neolamprologus_brichardi
ENSPTRG00000002291	UPF2	100	99.450	ENSNLEG00000012058	UPF2	100	99.450	Nomascus_leucogenys
ENSPTRG00000002291	UPF2	61	97.927	ENSMEUG00000002180	-	60	97.927	Notamacropus_eugenii
ENSPTRG00000002291	UPF2	76	100.000	ENSOPRG00000006801	-	78	100.000	Ochotona_princeps
ENSPTRG00000002291	UPF2	100	96.619	ENSODEG00000001290	UPF2	100	96.619	Octodon_degus
ENSPTRG00000002291	UPF2	100	80.982	ENSONIG00000017991	UPF2	100	82.697	Oreochromis_niloticus
ENSPTRG00000002291	UPF2	99	96.946	ENSOCUG00000006230	UPF2	100	96.946	Oryctolagus_cuniculus
ENSPTRG00000002291	UPF2	100	81.634	ENSORLG00000017189	UPF2	100	82.215	Oryzias_latipes
ENSPTRG00000002291	UPF2	100	81.634	ENSORLG00020005969	UPF2	100	81.903	Oryzias_latipes_hni
ENSPTRG00000002291	UPF2	100	81.634	ENSORLG00015005713	UPF2	100	81.903	Oryzias_latipes_hsok
ENSPTRG00000002291	UPF2	99	78.159	ENSOMEG00000023420	UPF2	98	79.046	Oryzias_melastigma
ENSPTRG00000002291	UPF2	100	98.349	ENSOGAG00000005796	UPF2	100	98.349	Otolemur_garnettii
ENSPTRG00000002291	UPF2	100	97.567	ENSOARG00000014587	UPF2	100	97.567	Ovis_aries
ENSPTRG00000002291	UPF2	100	99.287	ENSPPAG00000037953	UPF2	100	99.287	Pan_paniscus
ENSPTRG00000002291	UPF2	100	97.563	ENSPPRG00000000690	UPF2	100	97.563	Panthera_pardus
ENSPTRG00000002291	UPF2	100	97.563	ENSPTIG00000008867	UPF2	100	97.563	Panthera_tigris_altaica
ENSPTRG00000002291	UPF2	100	99.607	ENSPANG00000023399	UPF2	100	99.607	Papio_anubis
ENSPTRG00000002291	UPF2	100	80.811	ENSPKIG00000025502	UPF2	100	82.073	Paramormyrops_kingsleyae
ENSPTRG00000002291	UPF2	60	91.247	ENSPSIG00000015158	UPF2	95	91.247	Pelodiscus_sinensis
ENSPTRG00000002291	UPF2	99	79.749	ENSPMGG00000005259	UPF2	100	80.377	Periophthalmus_magnuspinnatus
ENSPTRG00000002291	UPF2	93	93.605	ENSPEMG00000015731	Upf2	99	93.605	Peromyscus_maniculatus_bairdii
ENSPTRG00000002291	UPF2	100	93.003	ENSPCIG00000006656	UPF2	100	95.047	Phascolarctos_cinereus
ENSPTRG00000002291	UPF2	100	79.891	ENSPFOG00000017118	UPF2	100	81.917	Poecilia_formosa
ENSPTRG00000002291	UPF2	100	79.891	ENSPLAG00000005094	UPF2	100	81.917	Poecilia_latipinna
ENSPTRG00000002291	UPF2	100	79.891	ENSPMEG00000017009	UPF2	100	81.917	Poecilia_mexicana
ENSPTRG00000002291	UPF2	99	79.656	ENSPREG00000021880	UPF2	100	82.081	Poecilia_reticulata
ENSPTRG00000002291	UPF2	66	99.761	ENSPPYG00000002089	-	100	99.761	Pongo_abelii
ENSPTRG00000002291	UPF2	100	83.333	ENSPCAG00000000684	UPF2	100	83.333	Procavia_capensis
ENSPTRG00000002291	UPF2	100	96.197	ENSPCOG00000021656	UPF2	100	96.197	Propithecus_coquereli
ENSPTRG00000002291	UPF2	100	90.181	ENSPVAG00000017286	UPF2	100	90.181	Pteropus_vampyrus
ENSPTRG00000002291	UPF2	99	78.454	ENSPNYG00000017096	UPF2	100	80.172	Pundamilia_nyererei
ENSPTRG00000002291	UPF2	100	82.775	ENSPNAG00000009357	UPF2	100	83.242	Pygocentrus_nattereri
ENSPTRG00000002291	UPF2	99	90.667	ENSRNOG00000023593	Upf2	100	100.000	Rattus_norvegicus
ENSPTRG00000002291	UPF2	100	98.494	ENSRBIG00000037780	UPF2	100	98.504	Rhinopithecus_bieti
ENSPTRG00000002291	UPF2	100	99.528	ENSRROG00000043547	UPF2	100	99.528	Rhinopithecus_roxellana
ENSPTRG00000002291	UPF2	100	98.899	ENSSBOG00000020012	UPF2	100	98.899	Saimiri_boliviensis_boliviensis
ENSPTRG00000002291	UPF2	100	81.698	ENSSFOG00015023788	upf2	100	82.788	Scleropages_formosus
ENSPTRG00000002291	UPF2	90	83.001	ENSSMAG00000007637	UPF2	100	80.078	Scophthalmus_maximus
ENSPTRG00000002291	UPF2	100	82.151	ENSSDUG00000017244	UPF2	99	82.619	Seriola_dumerili
ENSPTRG00000002291	UPF2	99	80.438	ENSSLDG00000016866	UPF2	100	80.986	Seriola_lalandi_dorsalis
ENSPTRG00000002291	UPF2	100	95.362	ENSSARG00000008615	UPF2	100	95.362	Sorex_araneus
ENSPTRG00000002291	UPF2	99	89.929	ENSSPUG00000014544	UPF2	99	89.929	Sphenodon_punctatus
ENSPTRG00000002291	UPF2	68	98.964	ENSSSCG00000011117	-	100	98.964	Sus_scrofa
ENSPTRG00000002291	UPF2	99	91.253	ENSTGUG00000002163	-	100	93.065	Taeniopygia_guttata
ENSPTRG00000002291	UPF2	100	81.634	ENSTRUG00000007519	UPF2	99	81.995	Takifugu_rubripes
ENSPTRG00000002291	UPF2	100	79.953	ENSTNIG00000004453	UPF2	100	79.844	Tetraodon_nigroviridis
ENSPTRG00000002291	UPF2	93	90.271	ENSTBEG00000012679	UPF2	93	90.609	Tupaia_belangeri
ENSPTRG00000002291	UPF2	100	97.642	ENSTTRG00000016388	UPF2	100	97.642	Tursiops_truncatus
ENSPTRG00000002291	UPF2	94	100.000	ENSUAMG00000023560	UPF2	99	100.000	Ursus_americanus
ENSPTRG00000002291	UPF2	100	97.956	ENSUMAG00000012953	UPF2	95	97.956	Ursus_maritimus
ENSPTRG00000002291	UPF2	85	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSPTRG00000002291	UPF2	100	97.642	ENSVVUG00000006166	UPF2	100	97.642	Vulpes_vulpes
ENSPTRG00000002291	UPF2	100	83.372	ENSXETG00000033103	UPF2	91	88.908	Xenopus_tropicalis
ENSPTRG00000002291	UPF2	92	84.543	ENSXCOG00000011604	UPF2	100	81.577	Xiphophorus_couchianus
ENSPTRG00000002291	UPF2	92	84.740	ENSXMAG00000017209	UPF2	100	81.606	Xiphophorus_maculatus