EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000002508 (Gene tree)
Gene ID: 466076
Gene Symbol: A1CF
Alias: -
Full Name: APOBEC1 complementation factor
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 80119 bases
Position: chr10:51600558-51680676
Accession: 3792
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000065542	DND1_DSRM	PF14709.7	1.1e-24	1	1
ENSPTRP00000083206	DND1_DSRM	PF14709.7	1.1e-24	1	1
ENSPTRP00000004324	DND1_DSRM	PF14709.7	1.1e-24	1	1
ENSPTRP00000083206	RRM_1	PF00076.22	3.8e-40	1	3
ENSPTRP00000083206	RRM_1	PF00076.22	3.8e-40	2	3
ENSPTRP00000083206	RRM_1	PF00076.22	3.8e-40	3	3
ENSPTRP00000065542	RRM_1	PF00076.22	3.9e-40	1	3
ENSPTRP00000065542	RRM_1	PF00076.22	3.9e-40	2	3
ENSPTRP00000065542	RRM_1	PF00076.22	3.9e-40	3	3
ENSPTRP00000004324	RRM_1	PF00076.22	4e-40	1	3
ENSPTRP00000004324	RRM_1	PF00076.22	4e-40	2	3
ENSPTRP00000004324	RRM_1	PF00076.22	4e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000004691	-	2022	XM_009458469	ENSPTRP00000004324	594 (aa)	XP_009456744	H2Q1W9
ENSPTRT00000108146	-	1919	XM_009458471	ENSPTRP00000083206	586 (aa)	XP_009456746	A0A2I3T1V3
ENSPTRT00000105155	-	1740	-	ENSPTRP00000065542	579 (aa)	-	A0A2I3RMG8

Gene Model

Click here to download ENSPTRG00000002508's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000002508's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000002508	A1CF	74	60.135	ENSPTRG00000016006	RBM47	87	68.588
ENSPTRG00000002508	A1CF	52	52.427	ENSPTRG00000018393	SYNCRIP	70	44.764
ENSPTRG00000002508	A1CF	68	72.667	ENSPTRG00000016538	RBM46	85	72.667
ENSPTRG00000002508	A1CF	53	52.215	ENSPTRG00000000324	HNRNPR	53	52.215

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000002508	A1CF	100	99.663	ENSG00000148584	A1CF	100	100.000	Homo_sapiens
ENSPTRG00000002508	A1CF	100	74.242	ENSAPOG00000008259	a1cf	100	74.242	Acanthochromis_polyacanthus
ENSPTRG00000002508	A1CF	100	94.781	ENSAMEG00000000523	A1CF	100	95.623	Ailuropoda_melanoleuca
ENSPTRG00000002508	A1CF	100	76.033	ENSACIG00000008632	a1cf	100	77.355	Amphilophus_citrinellus
ENSPTRG00000002508	A1CF	100	74.917	ENSAOCG00000023744	a1cf	96	84.348	Amphiprion_ocellaris
ENSPTRG00000002508	A1CF	100	74.918	ENSAPEG00000009537	a1cf	100	75.738	Amphiprion_percula
ENSPTRG00000002508	A1CF	100	76.733	ENSATEG00000013720	a1cf	100	78.218	Anabas_testudineus
ENSPTRG00000002508	A1CF	100	89.244	ENSAPLG00000002964	A1CF	100	89.244	Anas_platyrhynchos
ENSPTRG00000002508	A1CF	100	84.327	ENSACAG00000015269	A1CF	100	83.986	Anolis_carolinensis
ENSPTRG00000002508	A1CF	100	98.296	ENSANAG00000019974	A1CF	100	98.296	Aotus_nancymaae
ENSPTRG00000002508	A1CF	100	73.964	ENSACLG00000017428	a1cf	100	76.119	Astatotilapia_calliptera
ENSPTRG00000002508	A1CF	100	74.711	ENSAMXG00000018180	a1cf	100	74.876	Astyanax_mexicanus
ENSPTRG00000002508	A1CF	100	95.400	ENSBTAG00000021195	A1CF	100	96.283	Bos_taurus
ENSPTRG00000002508	A1CF	100	98.655	ENSCJAG00000005045	A1CF	100	98.655	Callithrix_jacchus
ENSPTRG00000002508	A1CF	100	94.613	ENSCAFG00000015581	A1CF	100	95.455	Canis_familiaris
ENSPTRG00000002508	A1CF	100	94.613	ENSCAFG00020026421	A1CF	100	95.455	Canis_lupus_dingo
ENSPTRG00000002508	A1CF	100	94.958	ENSCHIG00000020411	A1CF	100	95.126	Capra_hircus
ENSPTRG00000002508	A1CF	97	95.544	ENSTSYG00000001755	A1CF	100	96.926	Carlito_syrichta
ENSPTRG00000002508	A1CF	88	95.868	ENSCAPG00000017386	A1CF	89	95.868	Cavia_aperea
ENSPTRG00000002508	A1CF	100	95.791	ENSCPOG00000009807	A1CF	100	95.791	Cavia_porcellus
ENSPTRG00000002508	A1CF	100	98.151	ENSCCAG00000018168	A1CF	100	98.151	Cebus_capucinus
ENSPTRG00000002508	A1CF	100	97.785	ENSCATG00000043715	A1CF	100	97.785	Cercocebus_atys
ENSPTRG00000002508	A1CF	100	95.805	ENSCLAG00000010424	A1CF	100	95.805	Chinchilla_lanigera
ENSPTRG00000002508	A1CF	100	97.815	ENSCSAG00000007032	A1CF	100	97.815	Chlorocebus_sabaeus
ENSPTRG00000002508	A1CF	98	90.893	ENSCHOG00000009089	A1CF	98	91.065	Choloepus_hoffmanni
ENSPTRG00000002508	A1CF	100	88.571	ENSCPBG00000026464	A1CF	100	88.403	Chrysemys_picta_bellii
ENSPTRG00000002508	A1CF	100	97.815	ENSCANG00000038032	A1CF	100	97.815	Colobus_angolensis_palliatus
ENSPTRG00000002508	A1CF	100	94.118	ENSCGRG00001017413	A1cf	100	94.286	Cricetulus_griseus_chok1gshd
ENSPTRG00000002508	A1CF	100	93.277	ENSCGRG00000017332	A1cf	100	93.613	Cricetulus_griseus_crigri
ENSPTRG00000002508	A1CF	100	74.793	ENSCSEG00000002361	a1cf	100	76.119	Cynoglossus_semilaevis
ENSPTRG00000002508	A1CF	100	75.743	ENSCVAG00000010520	a1cf	100	77.228	Cyprinodon_variegatus
ENSPTRG00000002508	A1CF	100	79.054	ENSDARG00000002968	a1cf	100	80.574	Danio_rerio
ENSPTRG00000002508	A1CF	100	94.958	ENSDNOG00000002829	A1CF	100	95.126	Dasypus_novemcinctus
ENSPTRG00000002508	A1CF	80	95.785	ENSETEG00000012527	A1CF	79	95.785	Echinops_telfairi
ENSPTRG00000002508	A1CF	100	96.482	ENSEASG00005012924	A1CF	100	96.482	Equus_asinus_asinus
ENSPTRG00000002508	A1CF	100	95.980	ENSECAG00000010424	A1CF	100	95.980	Equus_caballus
ENSPTRG00000002508	A1CF	80	79.828	ENSEEUG00000000013	A1CF	100	81.223	Erinaceus_europaeus
ENSPTRG00000002508	A1CF	100	79.000	ENSELUG00000003159	a1cf	100	80.000	Esox_lucius
ENSPTRG00000002508	A1CF	100	93.857	ENSFCAG00000011179	A1CF	100	94.369	Felis_catus
ENSPTRG00000002508	A1CF	100	87.394	ENSFALG00000013183	A1CF	100	87.223	Ficedula_albicollis
ENSPTRG00000002508	A1CF	100	95.741	ENSFDAG00000019371	A1CF	100	95.741	Fukomys_damarensis
ENSPTRG00000002508	A1CF	100	70.627	ENSFHEG00000019652	a1cf	96	82.031	Fundulus_heteroclitus
ENSPTRG00000002508	A1CF	100	71.901	ENSGMOG00000018943	a1cf	100	71.901	Gadus_morhua
ENSPTRG00000002508	A1CF	99	86.426	ENSGALG00000003765	A1CF	99	86.254	Gallus_gallus
ENSPTRG00000002508	A1CF	100	70.667	ENSGAFG00000014868	a1cf	100	71.667	Gambusia_affinis
ENSPTRG00000002508	A1CF	100	73.849	ENSGACG00000010241	a1cf	100	75.000	Gasterosteus_aculeatus
ENSPTRG00000002508	A1CF	99	86.828	ENSGAGG00000016508	A1CF	99	86.655	Gopherus_agassizii
ENSPTRG00000002508	A1CF	100	99.832	ENSGGOG00000009670	A1CF	100	99.832	Gorilla_gorilla
ENSPTRG00000002508	A1CF	100	75.207	ENSHBUG00000021959	a1cf	100	77.190	Haplochromis_burtoni
ENSPTRG00000002508	A1CF	100	96.303	ENSHGLG00000008955	A1CF	100	96.303	Heterocephalus_glaber_female
ENSPTRG00000002508	A1CF	100	94.790	ENSHGLG00100000518	A1CF	100	95.630	Heterocephalus_glaber_male
ENSPTRG00000002508	A1CF	100	69.821	ENSHCOG00000017669	a1cf	100	72.638	Hippocampus_comes
ENSPTRG00000002508	A1CF	89	83.022	ENSIPUG00000010367	a1cf	96	83.022	Ictalurus_punctatus
ENSPTRG00000002508	A1CF	100	76.585	ENSKMAG00000006568	a1cf	100	77.398	Kryptolebias_marmoratus
ENSPTRG00000002508	A1CF	99	75.163	ENSLBEG00000020994	a1cf	98	76.847	Labrus_bergylta
ENSPTRG00000002508	A1CF	100	82.712	ENSLACG00000008061	A1CF	100	82.542	Latimeria_chalumnae
ENSPTRG00000002508	A1CF	100	82.137	ENSLOCG00000006302	a1cf	100	81.970	Lepisosteus_oculatus
ENSPTRG00000002508	A1CF	100	94.454	ENSLAFG00000015462	A1CF	100	94.454	Loxodonta_africana
ENSPTRG00000002508	A1CF	100	98.126	ENSMFAG00000035948	A1CF	100	98.126	Macaca_fascicularis
ENSPTRG00000002508	A1CF	100	98.126	ENSMMUG00000007077	A1CF	100	98.126	Macaca_mulatta
ENSPTRG00000002508	A1CF	100	97.785	ENSMNEG00000031454	A1CF	100	97.785	Macaca_nemestrina
ENSPTRG00000002508	A1CF	100	97.815	ENSMLEG00000037223	A1CF	100	97.815	Mandrillus_leucophaeus
ENSPTRG00000002508	A1CF	100	74.793	ENSMAMG00000010402	a1cf	100	76.987	Mastacembelus_armatus
ENSPTRG00000002508	A1CF	100	76.000	ENSMZEG00005013245	a1cf	100	76.795	Maylandia_zebra
ENSPTRG00000002508	A1CF	100	88.423	ENSMGAG00000001507	A1CF	100	88.255	Meleagris_gallopavo
ENSPTRG00000002508	A1CF	100	93.445	ENSMAUG00000007422	A1cf	100	93.782	Mesocricetus_auratus
ENSPTRG00000002508	A1CF	100	96.102	ENSMICG00000003377	A1CF	100	96.102	Microcebus_murinus
ENSPTRG00000002508	A1CF	100	93.782	ENSMOCG00000021536	A1cf	100	93.782	Microtus_ochrogaster
ENSPTRG00000002508	A1CF	100	68.439	ENSMMOG00000009422	a1cf	100	70.266	Mola_mola
ENSPTRG00000002508	A1CF	92	91.636	ENSMODG00000016478	A1CF	99	91.636	Monodelphis_domestica
ENSPTRG00000002508	A1CF	100	72.927	ENSMALG00000012992	a1cf	100	72.927	Monopterus_albus
ENSPTRG00000002508	A1CF	100	93.277	MGP_CAROLIEiJ_G0022873	A1cf	100	93.277	Mus_caroli
ENSPTRG00000002508	A1CF	100	93.277	ENSMUSG00000052595	A1cf	99	95.538	Mus_musculus
ENSPTRG00000002508	A1CF	100	92.437	MGP_PahariEiJ_G0014366	A1cf	100	92.437	Mus_pahari
ENSPTRG00000002508	A1CF	100	92.773	MGP_SPRETEiJ_G0023792	A1cf	100	92.773	Mus_spretus
ENSPTRG00000002508	A1CF	100	89.899	ENSMPUG00000016971	A1CF	100	90.067	Mustela_putorius_furo
ENSPTRG00000002508	A1CF	100	94.454	ENSMLUG00000016071	A1CF	100	94.454	Myotis_lucifugus
ENSPTRG00000002508	A1CF	100	94.958	ENSNGAG00000015136	A1cf	100	94.958	Nannospalax_galili
ENSPTRG00000002508	A1CF	100	75.537	ENSNBRG00000001712	a1cf	100	77.521	Neolamprologus_brichardi
ENSPTRG00000002508	A1CF	100	98.992	ENSNLEG00000012028	A1CF	100	98.992	Nomascus_leucogenys
ENSPTRG00000002508	A1CF	97	89.858	ENSMEUG00000015909	A1CF	100	91.155	Notamacropus_eugenii
ENSPTRG00000002508	A1CF	88	85.524	ENSOPRG00000010667	A1CF	97	85.660	Ochotona_princeps
ENSPTRG00000002508	A1CF	100	75.868	ENSONIG00000019105	a1cf	100	77.025	Oreochromis_niloticus
ENSPTRG00000002508	A1CF	78	90.414	ENSOANG00000007360	A1CF	99	90.414	Ornithorhynchus_anatinus
ENSPTRG00000002508	A1CF	100	94.048	ENSOCUG00000011587	A1CF	100	94.898	Oryctolagus_cuniculus
ENSPTRG00000002508	A1CF	100	73.977	ENSORLG00000013342	a1cf	100	73.906	Oryzias_latipes
ENSPTRG00000002508	A1CF	100	75.327	ENSORLG00020000586	a1cf	100	75.896	Oryzias_latipes_hni
ENSPTRG00000002508	A1CF	100	75.163	ENSORLG00015018569	a1cf	100	75.733	Oryzias_latipes_hsok
ENSPTRG00000002508	A1CF	100	75.954	ENSOMEG00000013531	a1cf	100	75.290	Oryzias_melastigma
ENSPTRG00000002508	A1CF	100	94.949	ENSOGAG00000012884	A1CF	100	95.286	Otolemur_garnettii
ENSPTRG00000002508	A1CF	100	94.958	ENSOARG00000013695	A1CF	100	95.126	Ovis_aries
ENSPTRG00000002508	A1CF	100	96.013	ENSPPAG00000028115	A1CF	100	99.798	Pan_paniscus
ENSPTRG00000002508	A1CF	100	94.276	ENSPPRG00000012180	A1CF	100	94.781	Panthera_pardus
ENSPTRG00000002508	A1CF	100	94.276	ENSPTIG00000021223	A1CF	100	94.781	Panthera_tigris_altaica
ENSPTRG00000002508	A1CF	100	98.126	ENSPANG00000021988	A1CF	100	98.126	Papio_anubis
ENSPTRG00000002508	A1CF	100	80.667	ENSPKIG00000025176	a1cf	100	80.500	Paramormyrops_kingsleyae
ENSPTRG00000002508	A1CF	100	88.245	ENSPSIG00000010318	A1CF	100	87.905	Pelodiscus_sinensis
ENSPTRG00000002508	A1CF	88	71.954	ENSPMGG00000013359	a1cf	99	68.503	Periophthalmus_magnuspinnatus
ENSPTRG00000002508	A1CF	100	94.454	ENSPEMG00000015021	A1cf	100	94.454	Peromyscus_maniculatus_bairdii
ENSPTRG00000002508	A1CF	100	90.971	ENSPCIG00000002175	A1CF	100	90.971	Phascolarctos_cinereus
ENSPTRG00000002508	A1CF	100	75.733	ENSPFOG00000007437	-	100	77.199	Poecilia_formosa
ENSPTRG00000002508	A1CF	100	75.896	ENSPFOG00000006683	a1cf	100	77.362	Poecilia_formosa
ENSPTRG00000002508	A1CF	100	75.578	ENSPLAG00000001210	-	100	77.063	Poecilia_latipinna
ENSPTRG00000002508	A1CF	100	75.578	ENSPLAG00000000026	a1cf	100	77.063	Poecilia_latipinna
ENSPTRG00000002508	A1CF	100	68.046	ENSPMEG00000000921	a1cf	100	69.536	Poecilia_mexicana
ENSPTRG00000002508	A1CF	100	68.301	ENSPMEG00000015529	-	100	69.771	Poecilia_mexicana
ENSPTRG00000002508	A1CF	100	75.570	ENSPREG00000016298	a1cf	100	77.036	Poecilia_reticulata
ENSPTRG00000002508	A1CF	100	98.807	ENSPPYG00000002819	A1CF	100	98.807	Pongo_abelii
ENSPTRG00000002508	A1CF	82	73.517	ENSPCAG00000006463	A1CF	79	74.784	Procavia_capensis
ENSPTRG00000002508	A1CF	100	96.477	ENSPCOG00000024172	A1CF	100	96.477	Propithecus_coquereli
ENSPTRG00000002508	A1CF	100	75.530	ENSPNYG00000017944	a1cf	100	77.488	Pundamilia_nyererei
ENSPTRG00000002508	A1CF	100	80.872	ENSPNAG00000007704	a1cf	100	80.872	Pygocentrus_nattereri
ENSPTRG00000002508	A1CF	100	93.526	ENSRNOG00000033195	A1cf	100	93.526	Rattus_norvegicus
ENSPTRG00000002508	A1CF	100	91.457	ENSRBIG00000042892	A1CF	100	96.620	Rhinopithecus_bieti
ENSPTRG00000002508	A1CF	100	98.151	ENSRROG00000041398	A1CF	100	98.151	Rhinopithecus_roxellana
ENSPTRG00000002508	A1CF	100	98.487	ENSSBOG00000021930	A1CF	100	98.487	Saimiri_boliviensis_boliviensis
ENSPTRG00000002508	A1CF	100	90.084	ENSSHAG00000005096	A1CF	100	90.084	Sarcophilus_harrisii
ENSPTRG00000002508	A1CF	100	80.336	ENSSFOG00015011774	a1cf	100	80.504	Scleropages_formosus
ENSPTRG00000002508	A1CF	100	75.081	ENSSMAG00000013271	a1cf	100	75.407	Scophthalmus_maximus
ENSPTRG00000002508	A1CF	100	76.119	ENSSDUG00000013930	a1cf	100	77.612	Seriola_dumerili
ENSPTRG00000002508	A1CF	100	70.401	ENSSLDG00000004290	a1cf	100	71.405	Seriola_lalandi_dorsalis
ENSPTRG00000002508	A1CF	98	84.099	ENSSARG00000005940	A1CF	96	85.484	Sorex_araneus
ENSPTRG00000002508	A1CF	100	86.059	ENSSPUG00000006797	A1CF	95	87.852	Sphenodon_punctatus
ENSPTRG00000002508	A1CF	100	95.630	ENSSSCG00000010431	A1CF	100	95.798	Sus_scrofa
ENSPTRG00000002508	A1CF	100	87.458	ENSTGUG00000005090	A1CF	100	87.291	Taeniopygia_guttata
ENSPTRG00000002508	A1CF	100	74.878	ENSTRUG00000001982	a1cf	100	74.878	Takifugu_rubripes
ENSPTRG00000002508	A1CF	100	75.285	ENSTNIG00000003580	a1cf	100	75.285	Tetraodon_nigroviridis
ENSPTRG00000002508	A1CF	97	88.401	ENSTTRG00000013190	A1CF	100	85.358	Tursiops_truncatus
ENSPTRG00000002508	A1CF	100	95.392	ENSUAMG00000020065	A1CF	100	95.563	Ursus_americanus
ENSPTRG00000002508	A1CF	100	94.949	ENSUMAG00000011162	A1CF	100	95.118	Ursus_maritimus
ENSPTRG00000002508	A1CF	89	89.251	ENSVPAG00000006130	A1CF	86	90.643	Vicugna_pacos
ENSPTRG00000002508	A1CF	100	95.222	ENSVVUG00000002504	A1CF	100	95.222	Vulpes_vulpes
ENSPTRG00000002508	A1CF	100	78.464	ENSXETG00000006611	a1cf	100	78.297	Xenopus_tropicalis
ENSPTRG00000002508	A1CF	100	76.910	ENSXCOG00000003302	a1cf	100	77.907	Xiphophorus_couchianus
ENSPTRG00000002508	A1CF	100	77.049	ENSXMAG00000016703	a1cf	100	78.033	Xiphophorus_maculatus