EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000003846 (Gene tree)
Gene ID: 466656
Gene Symbol: SF1
Alias: -
Full Name: splicing factor 1
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 14932 bases
Position: chr11:64797332-64812263
Accession: 1007
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000069059	KH_1	PF00013.29	2.3e-07	1	1
ENSPTRP00000079727	KH_1	PF00013.29	2.4e-07	1	1
ENSPTRP00000064865	KH_1	PF00013.29	3.2e-07	1	1
ENSPTRP00000089597	KH_1	PF00013.29	4.7e-07	1	1
ENSPTRP00000006630	KH_1	PF00013.29	4.8e-07	1	1
ENSPTRP00000081726	KH_1	PF00013.29	4.9e-07	1	1
ENSPTRP00000089629	KH_1	PF00013.29	5.2e-07	1	1
ENSPTRP00000079727	zf-CCHC	PF00098.23	0.00021	1	1
ENSPTRP00000069059	zf-CCHC	PF00098.23	0.00021	1	1
ENSPTRP00000064865	zf-CCHC	PF00098.23	0.00022	1	1
ENSPTRP00000089597	zf-CCHC	PF00098.23	0.00031	1	1
ENSPTRP00000006630	zf-CCHC	PF00098.23	0.00032	1	1
ENSPTRP00000081726	zf-CCHC	PF00098.23	0.00032	1	1
ENSPTRP00000089629	zf-CCHC	PF00098.23	0.00033	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000101422	-	3590	XM_001166494	ENSPTRP00000089629	675 (aa)	XP_001166494	A0A2I3TK70
ENSPTRT00000087704	-	1947	-	ENSPTRP00000081726	648 (aa)	-	A0A2I3SXQ4
ENSPTRT00000007189	-	3151	XM_001166699	ENSPTRP00000006630	638 (aa)	XP_001166699	H2Q406
ENSPTRT00000108026	-	1491	-	ENSPTRP00000064865	496 (aa)	-	A0A2I3RJQ0
ENSPTRT00000077989	-	1290	-	ENSPTRP00000079727	429 (aa)	-	A0A2I3SS22
ENSPTRT00000089000	-	1254	-	ENSPTRP00000069059	417 (aa)	-	A0A2I3RWI7
ENSPTRT00000077609	-	1911	-	ENSPTRP00000089597	636 (aa)	-	A0A2I3TK46

Gene Model

Click here to download ENSPTRG00000003846's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000003846's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000003846	SF1	91	80.928	ENSAPOG00000012341	sf1	62	76.027	Acanthochromis_polyacanthus
ENSPTRG00000003846	SF1	97	99.761	ENSAMEG00000017828	SF1	100	92.049	Ailuropoda_melanoleuca
ENSPTRG00000003846	SF1	89	82.713	ENSACIG00000016514	sf1	64	77.986	Amphilophus_citrinellus
ENSPTRG00000003846	SF1	91	80.412	ENSAOCG00000010934	sf1	62	76.027	Amphiprion_ocellaris
ENSPTRG00000003846	SF1	91	80.412	ENSAPEG00000009498	sf1	62	76.027	Amphiprion_percula
ENSPTRG00000003846	SF1	89	81.579	ENSATEG00000001894	sf1	60	78.810	Anabas_testudineus
ENSPTRG00000003846	SF1	95	89.216	ENSANAG00000022607	-	99	86.622	Aotus_nancymaae
ENSPTRG00000003846	SF1	100	99.843	ENSANAG00000026664	-	100	99.843	Aotus_nancymaae
ENSPTRG00000003846	SF1	88	84.282	ENSACLG00000007633	sf1	63	79.475	Astatotilapia_calliptera
ENSPTRG00000003846	SF1	88	85.829	ENSAMXG00000003630	sf1	54	80.668	Astyanax_mexicanus
ENSPTRG00000003846	SF1	99	100.000	ENSBTAG00000001035	SF1	94	99.666	Bos_taurus
ENSPTRG00000003846	SF1	100	100.000	ENSCJAG00000002780	SF1	100	100.000	Callithrix_jacchus
ENSPTRG00000003846	SF1	100	100.000	ENSCAFG00000014239	SF1	100	100.000	Canis_familiaris
ENSPTRG00000003846	SF1	100	100.000	ENSCAFG00020014381	SF1	100	100.000	Canis_lupus_dingo
ENSPTRG00000003846	SF1	99	100.000	ENSCHIG00000025867	SF1	98	100.000	Capra_hircus
ENSPTRG00000003846	SF1	82	98.925	ENSTSYG00000033618	SF1	98	98.925	Carlito_syrichta
ENSPTRG00000003846	SF1	97	99.518	ENSCAPG00000010762	SF1	100	78.889	Cavia_aperea
ENSPTRG00000003846	SF1	98	99.522	ENSCPOG00000012290	SF1	100	99.628	Cavia_porcellus
ENSPTRG00000003846	SF1	99	85.851	ENSCCAG00000023781	-	94	85.993	Cebus_capucinus
ENSPTRG00000003846	SF1	100	100.000	ENSCCAG00000037881	SF1	100	100.000	Cebus_capucinus
ENSPTRG00000003846	SF1	100	100.000	ENSCATG00000011564	SF1	100	100.000	Cercocebus_atys
ENSPTRG00000003846	SF1	99	100.000	ENSCSAG00000007258	SF1	98	100.000	Chlorocebus_sabaeus
ENSPTRG00000003846	SF1	91	93.333	ENSCHOG00000006008	SF1	79	93.780	Choloepus_hoffmanni
ENSPTRG00000003846	SF1	98	89.737	ENSCPBG00000023763	SF1	66	85.300	Chrysemys_picta_bellii
ENSPTRG00000003846	SF1	85	59.946	ENSCING00000005564	-	74	60.963	Ciona_intestinalis
ENSPTRG00000003846	SF1	96	58.993	ENSCSAVG00000009055	-	72	63.907	Ciona_savignyi
ENSPTRG00000003846	SF1	100	100.000	ENSCANG00000042201	SF1	100	100.000	Colobus_angolensis_palliatus
ENSPTRG00000003846	SF1	99	99.296	ENSCGRG00001003677	Sf1	100	94.640	Cricetulus_griseus_chok1gshd
ENSPTRG00000003846	SF1	97	99.277	ENSCGRG00000001708	Sf1	99	99.255	Cricetulus_griseus_crigri
ENSPTRG00000003846	SF1	92	78.325	ENSCSEG00000014375	sf1	58	76.526	Cynoglossus_semilaevis
ENSPTRG00000003846	SF1	89	84.324	ENSCVAG00000001670	sf1	65	79.137	Cyprinodon_variegatus
ENSPTRG00000003846	SF1	92	82.474	ENSDARG00000008188	sf1	73	78.947	Danio_rerio
ENSPTRG00000003846	SF1	99	99.296	ENSDNOG00000001282	SF1	98	99.442	Dasypus_novemcinctus
ENSPTRG00000003846	SF1	100	99.843	ENSDORG00000016334	Sf1	100	99.843	Dipodomys_ordii
ENSPTRG00000003846	SF1	95	89.681	ENSETEG00000012830	SF1	82	91.453	Echinops_telfairi
ENSPTRG00000003846	SF1	99	99.531	ENSEASG00005018272	SF1	98	99.628	Equus_asinus_asinus
ENSPTRG00000003846	SF1	99	99.765	ENSECAG00000024544	SF1	98	99.814	Equus_caballus
ENSPTRG00000003846	SF1	87	99.194	ENSEEUG00000001058	SF1	100	99.237	Erinaceus_europaeus
ENSPTRG00000003846	SF1	88	81.432	ENSELUG00000013225	sf1	55	78.271	Esox_lucius
ENSPTRG00000003846	SF1	100	100.000	ENSFCAG00000012231	SF1	100	100.000	Felis_catus
ENSPTRG00000003846	SF1	97	100.000	ENSFDAG00000009833	SF1	99	92.006	Fukomys_damarensis
ENSPTRG00000003846	SF1	91	80.155	ENSFHEG00000022656	sf1	61	77.412	Fundulus_heteroclitus
ENSPTRG00000003846	SF1	79	87.941	ENSGMOG00000007469	sf1	62	87.941	Gadus_morhua
ENSPTRG00000003846	SF1	91	83.896	ENSGAFG00000019284	sf1	79	80.374	Gambusia_affinis
ENSPTRG00000003846	SF1	92	80.000	ENSGACG00000000826	sf1	75	76.009	Gasterosteus_aculeatus
ENSPTRG00000003846	SF1	98	89.499	ENSGAGG00000021691	SF1	72	85.300	Gopherus_agassizii
ENSPTRG00000003846	SF1	89	82.895	ENSHBUG00000011598	sf1	61	78.322	Haplochromis_burtoni
ENSPTRG00000003846	SF1	100	99.843	ENSHGLG00000009541	SF1	100	99.843	Heterocephalus_glaber_female
ENSPTRG00000003846	SF1	90	88.802	ENSHGLG00100008076	-	87	89.327	Heterocephalus_glaber_male
ENSPTRG00000003846	SF1	97	100.000	ENSHGLG00100013879	-	93	94.521	Heterocephalus_glaber_male
ENSPTRG00000003846	SF1	98	86.667	ENSHGLG00100008255	-	94	86.345	Heterocephalus_glaber_male
ENSPTRG00000003846	SF1	91	79.639	ENSHCOG00000011388	sf1	60	76.960	Hippocampus_comes
ENSPTRG00000003846	SF1	98	99.681	ENSSTOG00000009790	-	100	99.681	Ictidomys_tridecemlineatus
ENSPTRG00000003846	SF1	97	87.981	ENSSTOG00000024353	-	83	96.667	Ictidomys_tridecemlineatus
ENSPTRG00000003846	SF1	100	99.687	ENSJJAG00000011788	Sf1	100	99.687	Jaculus_jaculus
ENSPTRG00000003846	SF1	91	81.841	ENSKMAG00000005854	sf1	64	77.471	Kryptolebias_marmoratus
ENSPTRG00000003846	SF1	89	82.199	ENSLBEG00000019836	sf1	66	78.037	Labrus_bergylta
ENSPTRG00000003846	SF1	97	78.333	ENSLACG00000018493	SF1	75	78.723	Latimeria_chalumnae
ENSPTRG00000003846	SF1	88	85.294	ENSLOCG00000002130	sf1	57	84.946	Lepisosteus_oculatus
ENSPTRG00000003846	SF1	97	99.522	ENSLAFG00000007201	SF1	100	95.659	Loxodonta_africana
ENSPTRG00000003846	SF1	100	100.000	ENSMFAG00000033122	SF1	100	100.000	Macaca_fascicularis
ENSPTRG00000003846	SF1	100	100.000	ENSMMUG00000022606	SF1	100	100.000	Macaca_mulatta
ENSPTRG00000003846	SF1	100	99.761	ENSMNEG00000037901	SF1	100	99.761	Macaca_nemestrina
ENSPTRG00000003846	SF1	100	98.086	ENSMLEG00000040706	SF1	100	98.086	Mandrillus_leucophaeus
ENSPTRG00000003846	SF1	91	80.928	ENSMAMG00000001780	sf1	60	77.934	Mastacembelus_armatus
ENSPTRG00000003846	SF1	89	82.632	ENSMZEG00005009196	sf1	61	78.089	Maylandia_zebra
ENSPTRG00000003846	SF1	100	99.216	ENSMAUG00000014064	Sf1	100	99.216	Mesocricetus_auratus
ENSPTRG00000003846	SF1	100	99.687	ENSMICG00000001202	SF1	100	99.687	Microcebus_murinus
ENSPTRG00000003846	SF1	100	99.216	ENSMOCG00000022038	Sf1	100	99.216	Microtus_ochrogaster
ENSPTRG00000003846	SF1	88	81.720	ENSMMOG00000020474	sf1	60	78.240	Mola_mola
ENSPTRG00000003846	SF1	97	98.561	ENSMODG00000029407	SF1	97	94.407	Monodelphis_domestica
ENSPTRG00000003846	SF1	89	82.888	ENSMALG00000020521	sf1	70	76.566	Monopterus_albus
ENSPTRG00000003846	SF1	100	99.216	MGP_CAROLIEiJ_G0022607	Sf1	100	99.625	Mus_caroli
ENSPTRG00000003846	SF1	100	99.216	ENSMUSG00000024949	Sf1	100	99.625	Mus_musculus
ENSPTRG00000003846	SF1	100	98.903	MGP_PahariEiJ_G0014101	Sf1	100	99.625	Mus_pahari
ENSPTRG00000003846	SF1	100	99.216	MGP_SPRETEiJ_G0023518	Sf1	100	99.625	Mus_spretus
ENSPTRG00000003846	SF1	97	99.761	ENSMPUG00000012684	SF1	92	99.492	Mustela_putorius_furo
ENSPTRG00000003846	SF1	99	95.305	ENSMLUG00000029800	-	90	89.564	Myotis_lucifugus
ENSPTRG00000003846	SF1	97	99.761	ENSMLUG00000015217	-	92	99.323	Myotis_lucifugus
ENSPTRG00000003846	SF1	100	99.687	ENSNGAG00000005550	Sf1	100	99.687	Nannospalax_galili
ENSPTRG00000003846	SF1	88	84.282	ENSNBRG00000017606	sf1	60	80.788	Neolamprologus_brichardi
ENSPTRG00000003846	SF1	100	100.000	ENSNLEG00000005236	-	100	100.000	Nomascus_leucogenys
ENSPTRG00000003846	SF1	95	98.778	ENSMEUG00000013424	SF1	100	98.493	Notamacropus_eugenii
ENSPTRG00000003846	SF1	94	95.541	ENSOPRG00000005008	SF1	100	99.394	Ochotona_princeps
ENSPTRG00000003846	SF1	99	97.418	ENSODEG00000006102	-	100	92.178	Octodon_degus
ENSPTRG00000003846	SF1	89	82.895	ENSONIG00000015728	sf1	61	78.322	Oreochromis_niloticus
ENSPTRG00000003846	SF1	79	87.848	ENSOANG00000002909	SF1	97	87.817	Ornithorhynchus_anatinus
ENSPTRG00000003846	SF1	99	99.841	ENSOCUG00000026486	SF1	100	99.841	Oryctolagus_cuniculus
ENSPTRG00000003846	SF1	89	81.102	ENSORLG00000011853	sf1	60	76.941	Oryzias_latipes
ENSPTRG00000003846	SF1	91	79.744	ENSORLG00020011834	sf1	60	76.887	Oryzias_latipes_hni
ENSPTRG00000003846	SF1	89	80.577	ENSORLG00015012855	sf1	60	76.706	Oryzias_latipes_hsok
ENSPTRG00000003846	SF1	91	80.256	ENSOMEG00000005210	sf1	62	76.498	Oryzias_melastigma
ENSPTRG00000003846	SF1	100	99.843	ENSOGAG00000016196	SF1	100	99.843	Otolemur_garnettii
ENSPTRG00000003846	SF1	99	100.000	ENSOARG00000009166	SF1	97	95.126	Ovis_aries
ENSPTRG00000003846	SF1	100	100.000	ENSPPAG00000002799	-	100	100.000	Pan_paniscus
ENSPTRG00000003846	SF1	98	100.000	ENSPPRG00000013566	SF1	98	100.000	Panthera_pardus
ENSPTRG00000003846	SF1	98	99.289	ENSPTIG00000016141	SF1	80	98.876	Panthera_tigris_altaica
ENSPTRG00000003846	SF1	100	99.761	ENSPANG00000020754	SF1	100	99.761	Papio_anubis
ENSPTRG00000003846	SF1	78	78.824	ENSPKIG00000012116	sf1	90	74.790	Paramormyrops_kingsleyae
ENSPTRG00000003846	SF1	73	87.619	ENSPSIG00000003610	SF1	95	72.349	Pelodiscus_sinensis
ENSPTRG00000003846	SF1	100	99.373	ENSPEMG00000010463	Sf1	100	99.373	Peromyscus_maniculatus_bairdii
ENSPTRG00000003846	SF1	81	72.107	ENSPMAG00000008272	sf1	58	63.183	Petromyzon_marinus
ENSPTRG00000003846	SF1	100	98.276	ENSPCIG00000018173	SF1	100	98.276	Phascolarctos_cinereus
ENSPTRG00000003846	SF1	91	85.752	ENSPFOG00000013683	sf1	69	81.265	Poecilia_formosa
ENSPTRG00000003846	SF1	88	83.862	ENSPLAG00000018076	sf1	62	79.343	Poecilia_latipinna
ENSPTRG00000003846	SF1	88	83.862	ENSPMEG00000005726	sf1	63	79.577	Poecilia_mexicana
ENSPTRG00000003846	SF1	90	82.292	ENSPREG00000004155	sf1	60	78.873	Poecilia_reticulata
ENSPTRG00000003846	SF1	100	99.843	ENSPPYG00000003098	-	100	99.843	Pongo_abelii
ENSPTRG00000003846	SF1	97	99.279	ENSPCAG00000013631	SF1	80	99.257	Procavia_capensis
ENSPTRG00000003846	SF1	100	99.843	ENSPCOG00000027546	SF1	100	99.843	Propithecus_coquereli
ENSPTRG00000003846	SF1	97	99.279	ENSPVAG00000016938	SF1	100	95.704	Pteropus_vampyrus
ENSPTRG00000003846	SF1	89	82.632	ENSPNYG00000004673	sf1	59	79.286	Pundamilia_nyererei
ENSPTRG00000003846	SF1	89	85.185	ENSPNAG00000013072	sf1	59	81.174	Pygocentrus_nattereri
ENSPTRG00000003846	SF1	99	99.296	ENSRNOG00000021085	Sf1	99	94.790	Rattus_norvegicus
ENSPTRG00000003846	SF1	99	100.000	ENSRBIG00000042818	SF1	100	95.925	Rhinopithecus_bieti
ENSPTRG00000003846	SF1	100	98.321	ENSRROG00000045655	SF1	100	100.000	Rhinopithecus_roxellana
ENSPTRG00000003846	SF1	70	43.182	YLR116W	MSL5	61	43.182	Saccharomyces_cerevisiae
ENSPTRG00000003846	SF1	98	82.578	ENSSBOG00000022267	-	99	81.731	Saimiri_boliviensis_boliviensis
ENSPTRG00000003846	SF1	94	91.951	ENSSHAG00000006841	SF1	75	93.171	Sarcophilus_harrisii
ENSPTRG00000003846	SF1	92	80.451	ENSSFOG00015021978	sf1	59	78.147	Scleropages_formosus
ENSPTRG00000003846	SF1	96	76.815	ENSSMAG00000007549	sf1	64	76.267	Scophthalmus_maximus
ENSPTRG00000003846	SF1	91	80.206	ENSSDUG00000003903	sf1	64	76.606	Seriola_dumerili
ENSPTRG00000003846	SF1	91	80.206	ENSSLDG00000013075	sf1	62	76.606	Seriola_lalandi_dorsalis
ENSPTRG00000003846	SF1	97	95.181	ENSSARG00000008180	SF1	100	95.745	Sorex_araneus
ENSPTRG00000003846	SF1	94	85.816	ENSSPUG00000012907	SF1	86	82.819	Sphenodon_punctatus
ENSPTRG00000003846	SF1	91	80.670	ENSSPAG00000019060	sf1	62	76.092	Stegastes_partitus
ENSPTRG00000003846	SF1	100	99.687	ENSSSCG00000013021	SF1	100	99.687	Sus_scrofa
ENSPTRG00000003846	SF1	93	71.921	ENSTNIG00000004820	sf1	81	70.115	Tetraodon_nigroviridis
ENSPTRG00000003846	SF1	95	92.138	ENSTBEG00000013133	SF1	75	100.000	Tupaia_belangeri
ENSPTRG00000003846	SF1	95	94.363	ENSTTRG00000008857	SF1	100	95.717	Tursiops_truncatus
ENSPTRG00000003846	SF1	76	96.488	ENSUAMG00000011977	SF1	92	96.488	Ursus_americanus
ENSPTRG00000003846	SF1	99	98.824	ENSUMAG00000007268	SF1	96	98.438	Ursus_maritimus
ENSPTRG00000003846	SF1	74	100.000	ENSVPAG00000011912	SF1	66	100.000	Vicugna_pacos
ENSPTRG00000003846	SF1	99	100.000	ENSVVUG00000028585	SF1	98	100.000	Vulpes_vulpes
ENSPTRG00000003846	SF1	99	80.046	ENSXETG00000008434	sf1	70	80.806	Xenopus_tropicalis
ENSPTRG00000003846	SF1	88	84.932	ENSXCOG00000003704	sf1	76	81.068	Xiphophorus_couchianus
ENSPTRG00000003846	SF1	89	83.113	ENSXMAG00000007822	sf1	63	79.577	Xiphophorus_maculatus