EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000004614 (Gene tree)
Gene ID: -
Gene Symbol: APOBEC1
Alias: -
Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 23008 bases
Position: chr12:7966079-7989086
Accession: 8340
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000007882	APOBEC_N	PF08210.11	2.5e-28	1	1
ENSPTRP00000007882	APOBEC_C	PF05240.14	8.9e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000008531	-	711	-	ENSPTRP00000007882	236 (aa)	-	H2Q5C6

Gene Model

Click here to download ENSPTRG00000004614's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000004614's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000004614	APOBEC1	53	34.127	ENSPTRG00000004640	AICDA	60	34.127
ENSPTRG00000004614	APOBEC1	51	33.594	ENSPTRG00000014384	APOBEC3B	51	38.144
ENSPTRG00000004614	APOBEC1	71	43.590	ENSPTRG00000014387	APOBEC3G	67	43.590

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000004614	APOBEC1	100	98.305	ENSG00000111701	APOBEC1	100	98.305	Homo_sapiens
ENSPTRG00000004614	APOBEC1	98	81.385	ENSAMEG00000007098	APOBEC1	98	81.385	Ailuropoda_melanoleuca
ENSPTRG00000004614	APOBEC1	72	40.351	ENSACAG00000028578	-	93	40.351	Anolis_carolinensis
ENSPTRG00000004614	APOBEC1	100	88.983	ENSANAG00000027743	APOBEC1	95	88.983	Aotus_nancymaae
ENSPTRG00000004614	APOBEC1	100	73.305	ENSBTAG00000014683	APOBEC1	100	73.305	Bos_taurus
ENSPTRG00000004614	APOBEC1	94	87.783	ENSCJAG00000005398	APOBEC1	100	87.783	Callithrix_jacchus
ENSPTRG00000004614	APOBEC1	100	78.390	ENSCAFG00000013901	APOBEC1	100	78.390	Canis_familiaris
ENSPTRG00000004614	APOBEC1	96	77.876	ENSCAFG00020003511	APOBEC1	95	77.876	Canis_lupus_dingo
ENSPTRG00000004614	APOBEC1	98	74.026	ENSCHIG00000011898	APOBEC1	96	74.026	Capra_hircus
ENSPTRG00000004614	APOBEC1	60	85.106	ENSTSYG00000029141	APOBEC1	100	85.106	Carlito_syrichta
ENSPTRG00000004614	APOBEC1	91	69.767	ENSCAPG00000015882	-	100	69.767	Cavia_aperea
ENSPTRG00000004614	APOBEC1	99	68.936	ENSCPOG00000033068	APOBEC1	99	68.936	Cavia_porcellus
ENSPTRG00000004614	APOBEC1	100	89.831	ENSCCAG00000022258	APOBEC1	100	89.831	Cebus_capucinus
ENSPTRG00000004614	APOBEC1	100	94.492	ENSCATG00000021613	APOBEC1	95	94.492	Cercocebus_atys
ENSPTRG00000004614	APOBEC1	97	71.304	ENSCLAG00000014645	APOBEC1	100	71.304	Chinchilla_lanigera
ENSPTRG00000004614	APOBEC1	81	93.194	ENSCSAG00000009817	APOBEC1	100	93.194	Chlorocebus_sabaeus
ENSPTRG00000004614	APOBEC1	77	44.920	ENSCPBG00000017398	-	82	44.920	Chrysemys_picta_bellii
ENSPTRG00000004614	APOBEC1	79	47.340	ENSCPBG00000014328	-	82	47.340	Chrysemys_picta_bellii
ENSPTRG00000004614	APOBEC1	83	51.020	ENSCPBG00000014329	-	54	51.020	Chrysemys_picta_bellii
ENSPTRG00000004614	APOBEC1	88	38.967	ENSCPBG00000014327	-	81	39.906	Chrysemys_picta_bellii
ENSPTRG00000004614	APOBEC1	78	47.059	ENSCPBG00000014335	-	76	47.059	Chrysemys_picta_bellii
ENSPTRG00000004614	APOBEC1	99	41.597	ENSCPBG00000014331	-	90	42.667	Chrysemys_picta_bellii
ENSPTRG00000004614	APOBEC1	97	93.478	ENSCANG00000038359	APOBEC1	100	93.478	Colobus_angolensis_palliatus
ENSPTRG00000004614	APOBEC1	97	71.179	ENSCGRG00001011130	Apobec1	100	71.179	Cricetulus_griseus_chok1gshd
ENSPTRG00000004614	APOBEC1	97	71.179	ENSCGRG00000008644	Apobec1	100	71.179	Cricetulus_griseus_crigri
ENSPTRG00000004614	APOBEC1	100	80.932	ENSDNOG00000010926	APOBEC1	100	80.932	Dasypus_novemcinctus
ENSPTRG00000004614	APOBEC1	90	66.822	ENSDORG00000023717	Apobec1	100	66.822	Dipodomys_ordii
ENSPTRG00000004614	APOBEC1	99	77.872	ENSETEG00000004867	APOBEC1	99	77.872	Echinops_telfairi
ENSPTRG00000004614	APOBEC1	98	82.684	ENSEASG00005015951	APOBEC1	97	82.684	Equus_asinus_asinus
ENSPTRG00000004614	APOBEC1	81	83.246	ENSECAG00000017163	APOBEC1	100	83.246	Equus_caballus
ENSPTRG00000004614	APOBEC1	86	54.412	ENSEEUG00000007530	-	97	54.412	Erinaceus_europaeus
ENSPTRG00000004614	APOBEC1	93	65.611	ENSEEUG00000009112	-	98	65.611	Erinaceus_europaeus
ENSPTRG00000004614	APOBEC1	100	81.780	ENSFCAG00000009350	APOBEC1	100	81.780	Felis_catus
ENSPTRG00000004614	APOBEC1	60	47.183	ENSFALG00000007257	-	70	47.183	Ficedula_albicollis
ENSPTRG00000004614	APOBEC1	88	60.386	ENSFDAG00000018470	APOBEC1	99	60.386	Fukomys_damarensis
ENSPTRG00000004614	APOBEC1	83	45.000	ENSGAGG00000006624	-	70	45.000	Gopherus_agassizii
ENSPTRG00000004614	APOBEC1	77	45.902	ENSGAGG00000021744	-	71	45.902	Gopherus_agassizii
ENSPTRG00000004614	APOBEC1	72	42.373	ENSGAGG00000021745	-	64	42.373	Gopherus_agassizii
ENSPTRG00000004614	APOBEC1	92	46.575	ENSGAGG00000011837	-	90	49.162	Gopherus_agassizii
ENSPTRG00000004614	APOBEC1	68	51.852	ENSGAGG00000004947	-	83	53.383	Gopherus_agassizii
ENSPTRG00000004614	APOBEC1	99	65.957	ENSHGLG00000001495	APOBEC1	99	65.957	Heterocephalus_glaber_female
ENSPTRG00000004614	APOBEC1	99	65.106	ENSHGLG00100002187	APOBEC1	99	65.106	Heterocephalus_glaber_male
ENSPTRG00000004614	APOBEC1	91	67.757	ENSSTOG00000021971	APOBEC1	100	83.673	Ictidomys_tridecemlineatus
ENSPTRG00000004614	APOBEC1	97	75.546	ENSJJAG00000022108	Apobec1	100	75.546	Jaculus_jaculus
ENSPTRG00000004614	APOBEC1	94	78.027	ENSLAFG00000030837	APOBEC1	100	78.027	Loxodonta_africana
ENSPTRG00000004614	APOBEC1	100	94.492	ENSMFAG00000000277	APOBEC1	100	94.492	Macaca_fascicularis
ENSPTRG00000004614	APOBEC1	100	94.068	ENSMNEG00000029670	APOBEC1	100	94.068	Macaca_nemestrina
ENSPTRG00000004614	APOBEC1	100	94.492	ENSMLEG00000036301	APOBEC1	100	94.492	Mandrillus_leucophaeus
ENSPTRG00000004614	APOBEC1	92	70.833	ENSMAUG00000022167	Apobec1	97	70.833	Mesocricetus_auratus
ENSPTRG00000004614	APOBEC1	100	83.051	ENSMICG00000043645	APOBEC1	100	83.051	Microcebus_murinus
ENSPTRG00000004614	APOBEC1	100	67.373	ENSMODG00000018004	APOBEC1	100	67.373	Monodelphis_domestica
ENSPTRG00000004614	APOBEC1	97	70.614	ENSMUSG00000040613	Apobec1	99	70.614	Mus_musculus
ENSPTRG00000004614	APOBEC1	97	68.860	MGP_PahariEiJ_G0022580	-	99	68.860	Mus_pahari
ENSPTRG00000004614	APOBEC1	97	70.614	MGP_SPRETEiJ_G0029857	Apobec1	99	70.614	Mus_spretus
ENSPTRG00000004614	APOBEC1	100	77.966	ENSMPUG00000017532	APOBEC1	100	77.966	Mustela_putorius_furo
ENSPTRG00000004614	APOBEC1	97	71.616	ENSNGAG00000022607	Apobec1	100	71.616	Nannospalax_galili
ENSPTRG00000004614	APOBEC1	100	96.610	ENSNLEG00000005342	APOBEC1	100	96.610	Nomascus_leucogenys
ENSPTRG00000004614	APOBEC1	100	64.831	ENSMEUG00000013406	APOBEC1	100	64.831	Notamacropus_eugenii
ENSPTRG00000004614	APOBEC1	77	62.983	ENSOPRG00000009508	-	100	62.983	Ochotona_princeps
ENSPTRG00000004614	APOBEC1	100	77.119	ENSOCUG00000025736	APOBEC1	88	77.119	Oryctolagus_cuniculus
ENSPTRG00000004614	APOBEC1	98	80.952	ENSOGAG00000026415	APOBEC1	98	80.952	Otolemur_garnettii
ENSPTRG00000004614	APOBEC1	100	73.305	ENSOARG00000002072	APOBEC1	99	73.305	Ovis_aries
ENSPTRG00000004614	APOBEC1	98	91.342	ENSPPAG00000027657	APOBEC1	98	91.342	Pan_paniscus
ENSPTRG00000004614	APOBEC1	100	81.356	ENSPPRG00000012182	APOBEC1	100	81.356	Panthera_pardus
ENSPTRG00000004614	APOBEC1	100	81.356	ENSPTIG00000020280	APOBEC1	100	81.356	Panthera_tigris_altaica
ENSPTRG00000004614	APOBEC1	100	94.492	ENSPANG00000021027	APOBEC1	100	94.492	Papio_anubis
ENSPTRG00000004614	APOBEC1	57	50.450	ENSPSIG00000012791	-	75	50.450	Pelodiscus_sinensis
ENSPTRG00000004614	APOBEC1	99	42.979	ENSPSIG00000012568	-	99	42.979	Pelodiscus_sinensis
ENSPTRG00000004614	APOBEC1	97	69.869	ENSPEMG00000023841	Apobec1	100	69.869	Peromyscus_maniculatus_bairdii
ENSPTRG00000004614	APOBEC1	100	70.339	ENSPCIG00000023973	APOBEC1	100	70.339	Phascolarctos_cinereus
ENSPTRG00000004614	APOBEC1	100	96.186	ENSPPYG00000004228	APOBEC1	95	96.186	Pongo_abelii
ENSPTRG00000004614	APOBEC1	79	80.749	ENSPCAG00000008733	APOBEC1	100	80.749	Procavia_capensis
ENSPTRG00000004614	APOBEC1	100	80.932	ENSPCOG00000013957	APOBEC1	100	80.932	Propithecus_coquereli
ENSPTRG00000004614	APOBEC1	100	65.254	ENSPVAG00000010709	APOBEC1	100	65.254	Pteropus_vampyrus
ENSPTRG00000004614	APOBEC1	97	69.298	ENSRNOG00000015411	Apobec1	99	69.298	Rattus_norvegicus
ENSPTRG00000004614	APOBEC1	100	93.644	ENSRBIG00000031161	APOBEC1	100	93.644	Rhinopithecus_bieti
ENSPTRG00000004614	APOBEC1	100	93.220	ENSRROG00000033576	APOBEC1	100	93.220	Rhinopithecus_roxellana
ENSPTRG00000004614	APOBEC1	73	91.329	ENSSBOG00000030587	APOBEC1	98	91.329	Saimiri_boliviensis_boliviensis
ENSPTRG00000004614	APOBEC1	96	70.485	ENSSHAG00000008925	APOBEC1	99	70.485	Sarcophilus_harrisii
ENSPTRG00000004614	APOBEC1	73	68.023	ENSSARG00000000032	-	100	68.023	Sorex_araneus
ENSPTRG00000004614	APOBEC1	56	73.282	ENSSARG00000011972	-	99	73.282	Sorex_araneus
ENSPTRG00000004614	APOBEC1	86	41.827	ENSSPUG00000009044	-	79	41.827	Sphenodon_punctatus
ENSPTRG00000004614	APOBEC1	100	79.661	ENSSSCG00000000668	APOBEC1	100	79.661	Sus_scrofa
ENSPTRG00000004614	APOBEC1	61	50.694	ENSTGUG00000013118	-	99	50.694	Taeniopygia_guttata
ENSPTRG00000004614	APOBEC1	94	76.471	ENSTBEG00000010043	APOBEC1	94	76.471	Tupaia_belangeri
ENSPTRG00000004614	APOBEC1	79	75.936	ENSTTRG00000014015	APOBEC1	100	75.936	Tursiops_truncatus
ENSPTRG00000004614	APOBEC1	98	80.952	ENSUAMG00000011636	APOBEC1	95	80.952	Ursus_americanus
ENSPTRG00000004614	APOBEC1	98	80.952	ENSUMAG00000016552	APOBEC1	95	80.952	Ursus_maritimus
ENSPTRG00000004614	APOBEC1	100	76.271	ENSVPAG00000001343	APOBEC1	100	76.271	Vicugna_pacos
ENSPTRG00000004614	APOBEC1	100	79.237	ENSVVUG00000010522	APOBEC1	100	79.237	Vulpes_vulpes