EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000004681 (Gene tree)
Gene ID: 465289
Gene Symbol: YBX3
Alias: -
Full Name: Y-box binding protein 3
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 24371 bases
Position: chr12:11181938-11206308
Accession: 5653
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000091121	CSD	PF00313.22	7.4e-26	1	1
ENSPTRP00000008009	CSD	PF00313.22	8.7e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000105355	-	1854	XM_009424783	ENSPTRP00000091121	305 (aa)	XP_009423058	K7BBH4
ENSPTRT00000008667	-	1820	-	ENSPTRP00000008009	374 (aa)	-	K7CRT7

Gene Model

Click here to download ENSPTRG00000004681's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000004681's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000004681	YBX3	83	50.617	ENSPTRG00000052534	-	83	51.342
ENSPTRG00000004681	YBX3	78	54.545	ENSPTRG00000043077	-	85	52.982
ENSPTRG00000004681	YBX3	83	50.617	ENSPTRG00000046217	-	83	51.342

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000004681	YBX3	100	99.465	ENSG00000060138	YBX3	100	99.465	Homo_sapiens
ENSPTRG00000004681	YBX3	96	85.475	ENSAMEG00000009393	YBX3	95	90.000	Ailuropoda_melanoleuca
ENSPTRG00000004681	YBX3	76	64.685	ENSAPLG00000003147	YBX3	70	100.000	Anas_platyrhynchos
ENSPTRG00000004681	YBX3	100	96.524	ENSANAG00000024492	-	100	98.418	Aotus_nancymaae
ENSPTRG00000004681	YBX3	98	86.923	ENSANAG00000033366	-	93	86.923	Aotus_nancymaae
ENSPTRG00000004681	YBX3	100	82.171	ENSBTAG00000009663	YBX3	100	77.261	Bos_taurus
ENSPTRG00000004681	YBX3	95	71.379	ENSCJAG00000033824	-	98	91.892	Callithrix_jacchus
ENSPTRG00000004681	YBX3	100	95.455	ENSCJAG00000021660	-	100	95.455	Callithrix_jacchus
ENSPTRG00000004681	YBX3	77	92.361	ENSCAFG00000013401	YBX3	100	92.202	Canis_familiaris
ENSPTRG00000004681	YBX3	100	87.467	ENSCAFG00020006412	YBX3	100	86.933	Canis_lupus_dingo
ENSPTRG00000004681	YBX3	100	82.171	ENSCHIG00000010863	YBX3	100	80.533	Capra_hircus
ENSPTRG00000004681	YBX3	77	94.774	ENSTSYG00000004204	-	88	94.774	Carlito_syrichta
ENSPTRG00000004681	YBX3	100	74.426	ENSTSYG00000035821	-	97	80.357	Carlito_syrichta
ENSPTRG00000004681	YBX3	77	86.760	ENSCAPG00000015039	YBX3	93	86.760	Cavia_aperea
ENSPTRG00000004681	YBX3	78	87.713	ENSCPOG00000011329	YBX3	86	87.713	Cavia_porcellus
ENSPTRG00000004681	YBX3	100	96.257	ENSCCAG00000016469	YBX3	100	96.257	Cebus_capucinus
ENSPTRG00000004681	YBX3	100	98.663	ENSCATG00000034411	YBX3	100	98.663	Cercocebus_atys
ENSPTRG00000004681	YBX3	77	87.108	ENSCLAG00000016030	YBX3	94	87.108	Chinchilla_lanigera
ENSPTRG00000004681	YBX3	100	99.198	ENSCSAG00000008744	YBX3	100	99.198	Chlorocebus_sabaeus
ENSPTRG00000004681	YBX3	94	82.286	ENSCHOG00000011988	YBX3	77	82.286	Choloepus_hoffmanni
ENSPTRG00000004681	YBX3	78	79.725	ENSCPBG00000014147	YBX3	81	78.840	Chrysemys_picta_bellii
ENSPTRG00000004681	YBX3	84	98.413	ENSCANG00000036801	YBX3	100	98.413	Colobus_angolensis_palliatus
ENSPTRG00000004681	YBX3	85	89.623	ENSCGRG00001016148	Ybx3	100	83.957	Cricetulus_griseus_chok1gshd
ENSPTRG00000004681	YBX3	77	90.753	ENSCGRG00000004563	Ybx3	98	89.384	Cricetulus_griseus_crigri
ENSPTRG00000004681	YBX3	90	81.176	ENSDORG00000009103	Ybx3	81	90.592	Dipodomys_ordii
ENSPTRG00000004681	YBX3	76	85.315	ENSETEG00000002557	YBX3	99	84.155	Echinops_telfairi
ENSPTRG00000004681	YBX3	100	85.561	ENSEASG00005014726	YBX3	100	85.294	Equus_asinus_asinus
ENSPTRG00000004681	YBX3	100	88.503	ENSECAG00000013777	YBX3	100	89.037	Equus_caballus
ENSPTRG00000004681	YBX3	76	92.254	ENSEEUG00000010415	YBX3	100	92.254	Erinaceus_europaeus
ENSPTRG00000004681	YBX3	100	92.787	ENSFCAG00000027748	YBX3	100	94.426	Felis_catus
ENSPTRG00000004681	YBX3	71	94.444	ENSFALG00000003661	YBX3	71	98.837	Ficedula_albicollis
ENSPTRG00000004681	YBX3	77	85.366	ENSFDAG00000021192	YBX3	92	84.321	Fukomys_damarensis
ENSPTRG00000004681	YBX3	100	68.404	ENSGALG00000031890	YBX3	70	97.849	Gallus_gallus
ENSPTRG00000004681	YBX3	78	79.381	ENSGAGG00000017780	YBX3	77	82.960	Gopherus_agassizii
ENSPTRG00000004681	YBX3	100	99.733	ENSGGOG00000001352	YBX3	100	99.733	Gorilla_gorilla
ENSPTRG00000004681	YBX3	81	75.490	ENSHGLG00000014798	-	86	76.431	Heterocephalus_glaber_female
ENSPTRG00000004681	YBX3	73	79.273	ENSHGLG00000015495	-	80	76.364	Heterocephalus_glaber_female
ENSPTRG00000004681	YBX3	71	88.532	ENSHGLG00100003589	YBX3	87	88.532	Heterocephalus_glaber_male
ENSPTRG00000004681	YBX3	93	84.971	ENSSTOG00000032577	-	100	82.888	Ictidomys_tridecemlineatus
ENSPTRG00000004681	YBX3	77	86.411	ENSSTOG00000002108	-	88	86.411	Ictidomys_tridecemlineatus
ENSPTRG00000004681	YBX3	79	69.024	ENSJJAG00000014239	Ybx3	96	85.227	Jaculus_jaculus
ENSPTRG00000004681	YBX3	100	90.909	ENSLAFG00000017247	YBX3	100	91.444	Loxodonta_africana
ENSPTRG00000004681	YBX3	100	98.396	ENSMFAG00000039369	YBX3	100	98.396	Macaca_fascicularis
ENSPTRG00000004681	YBX3	87	98.769	ENSMMUG00000022469	YBX3	100	98.769	Macaca_mulatta
ENSPTRG00000004681	YBX3	100	98.128	ENSMNEG00000045109	YBX3	100	98.128	Macaca_nemestrina
ENSPTRG00000004681	YBX3	92	85.131	ENSMLEG00000033618	YBX3	79	98.606	Mandrillus_leucophaeus
ENSPTRG00000004681	YBX3	70	98.095	ENSMGAG00000014224	YBX3	93	100.000	Meleagris_gallopavo
ENSPTRG00000004681	YBX3	87	88.685	ENSMAUG00000012185	Ybx3	98	86.293	Mesocricetus_auratus
ENSPTRG00000004681	YBX3	100	73.443	ENSMICG00000031459	-	100	69.508	Microcebus_murinus
ENSPTRG00000004681	YBX3	100	90.107	ENSMICG00000038002	-	100	91.711	Microcebus_murinus
ENSPTRG00000004681	YBX3	83	89.389	ENSMOCG00000016291	Ybx3	96	91.186	Microtus_ochrogaster
ENSPTRG00000004681	YBX3	77	83.333	ENSMODG00000018248	YBX3	91	84.028	Monodelphis_domestica
ENSPTRG00000004681	YBX3	85	88.679	MGP_CAROLIEiJ_G0028947	Ybx3	100	83.422	Mus_caroli
ENSPTRG00000004681	YBX3	85	88.679	ENSMUSG00000030189	Ybx3	100	83.422	Mus_musculus
ENSPTRG00000004681	YBX3	85	89.308	MGP_PahariEiJ_G0022709	Ybx3	100	83.957	Mus_pahari
ENSPTRG00000004681	YBX3	85	88.994	MGP_SPRETEiJ_G0029994	Ybx3	100	83.690	Mus_spretus
ENSPTRG00000004681	YBX3	100	79.843	ENSMPUG00000011810	YBX3	100	79.319	Mustela_putorius_furo
ENSPTRG00000004681	YBX3	71	93.309	ENSMLUG00000007476	YBX3	100	91.450	Myotis_lucifugus
ENSPTRG00000004681	YBX3	79	85.859	ENSNGAG00000000710	Ybx3	91	83.333	Nannospalax_galili
ENSPTRG00000004681	YBX3	95	94.085	ENSNLEG00000034844	YBX3	100	94.085	Nomascus_leucogenys
ENSPTRG00000004681	YBX3	81	80.921	ENSODEG00000017957	YBX3	94	81.620	Octodon_degus
ENSPTRG00000004681	YBX3	79	87.458	ENSOCUG00000001889	YBX3	85	87.119	Oryctolagus_cuniculus
ENSPTRG00000004681	YBX3	100	89.501	ENSOGAG00000013245	YBX3	100	89.239	Otolemur_garnettii
ENSPTRG00000004681	YBX3	69	98.980	ENSOARG00000020919	YBX3	99	82.492	Ovis_aries
ENSPTRG00000004681	YBX3	100	92.246	ENSPPAG00000039068	YBX3	100	92.246	Pan_paniscus
ENSPTRG00000004681	YBX3	100	92.513	ENSPPRG00000005859	YBX3	100	94.098	Panthera_pardus
ENSPTRG00000004681	YBX3	76	92.982	ENSPTIG00000005322	YBX3	81	92.334	Panthera_tigris_altaica
ENSPTRG00000004681	YBX3	100	98.396	ENSPANG00000010280	YBX3	100	98.396	Papio_anubis
ENSPTRG00000004681	YBX3	57	99.038	ENSPSIG00000009247	YBX3	95	100.000	Pelodiscus_sinensis
ENSPTRG00000004681	YBX3	81	88.710	ENSPEMG00000010391	-	85	91.150	Peromyscus_maniculatus_bairdii
ENSPTRG00000004681	YBX3	87	89.198	ENSPEMG00000012132	-	99	87.227	Peromyscus_maniculatus_bairdii
ENSPTRG00000004681	YBX3	69	81.538	ENSPCIG00000029949	YBX3	100	79.615	Phascolarctos_cinereus
ENSPTRG00000004681	YBX3	100	98.930	ENSPPYG00000004279	YBX3	100	98.930	Pongo_abelii
ENSPTRG00000004681	YBX3	80	100.000	ENSPCAG00000001397	YBX3	95	100.000	Procavia_capensis
ENSPTRG00000004681	YBX3	50	70.732	ENSPCOG00000011663	YBX3	100	85.115	Propithecus_coquereli
ENSPTRG00000004681	YBX3	100	79.467	ENSPVAG00000006740	YBX3	77	92.414	Pteropus_vampyrus
ENSPTRG00000004681	YBX3	85	89.937	ENSRNOG00000005480	Ybx3	100	84.225	Rattus_norvegicus
ENSPTRG00000004681	YBX3	100	97.594	ENSRBIG00000039208	YBX3	100	97.594	Rhinopithecus_bieti
ENSPTRG00000004681	YBX3	100	97.861	ENSRROG00000029638	YBX3	100	97.861	Rhinopithecus_roxellana
ENSPTRG00000004681	YBX3	92	87.464	ENSSBOG00000030573	YBX3	87	95.593	Saimiri_boliviensis_boliviensis
ENSPTRG00000004681	YBX3	65	98.837	ENSSHAG00000003262	YBX3	98	80.756	Sarcophilus_harrisii
ENSPTRG00000004681	YBX3	100	88.714	ENSSSCG00000000633	YBX3	100	90.289	Sus_scrofa
ENSPTRG00000004681	YBX3	70	98.077	ENSTGUG00000012047	YBX3	74	98.077	Taeniopygia_guttata
ENSPTRG00000004681	YBX3	100	86.096	ENSTBEG00000012570	YBX3	81	94.539	Tupaia_belangeri
ENSPTRG00000004681	YBX3	70	84.586	ENSTTRG00000008045	YBX3	100	84.586	Tursiops_truncatus
ENSPTRG00000004681	YBX3	74	88.129	ENSUAMG00000016662	YBX3	100	88.489	Ursus_americanus
ENSPTRG00000004681	YBX3	76	91.579	ENSUMAG00000016118	YBX3	94	91.638	Ursus_maritimus
ENSPTRG00000004681	YBX3	57	100.000	ENSVPAG00000000876	YBX3	100	72.535	Vicugna_pacos
ENSPTRG00000004681	YBX3	74	88.489	ENSVVUG00000004956	YBX3	100	89.209	Vulpes_vulpes
ENSPTRG00000004681	YBX3	53	92.222	ENSXETG00000016239	ybx3	90	68.142	Xenopus_tropicalis