EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000005067 (Gene tree)
Gene ID: 451975
Gene Symbol: PYM1
Alias: -
Full Name: PYM homolog 1%2C exon junction complex associated factor
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 36091 bases
Position: chr12:33925909-33961999
Accession: 5559
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000055814	Mago-bind	PF09282.10	1.3e-13	1	1
ENSPTRP00000076485	Mago-bind	PF09282.10	1.9e-13	1	1
ENSPTRP00000079685	Mago-bind	PF09282.10	2.4e-13	1	1
ENSPTRP00000088856	Mago-bind	PF09282.10	3.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000064263	-	1169	XM_509126	ENSPTRP00000055814	203 (aa)	XP_509126	H2RBK0
ENSPTRT00000082169	-	138	-	ENSPTRP00000063728	45 (aa)	-	A0A2I3RH78
ENSPTRT00000106184	-	609	-	ENSPTRP00000076485	202 (aa)	-	A0A2I3SHX3
ENSPTRT00000107492	-	135	-	ENSPTRP00000075532	44 (aa)	-	A0A2I3SF66
ENSPTRT00000105750	-	234	-	ENSPTRP00000081845	77 (aa)	-	A0A2I3SXX8
ENSPTRT00000083702	-	1256	XM_009425175	ENSPTRP00000088856	204 (aa)	XP_009423450	K7B106
ENSPTRT00000100997	-	615	-	ENSPTRP00000079685	204 (aa)	-	A0A2I3ST03

Gene Model

Click here to download ENSPTRG00000005067's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03013	RNA transport	KEGG
ptr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000005067's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000005067	PYM1	100	100.000	ENSG00000170473	PYM1	100	100.000	Homo_sapiens
ENSPTRG00000005067	PYM1	99	57.944	ENSAPOG00000023045	pym1	94	58.049	Acanthochromis_polyacanthus
ENSPTRG00000005067	PYM1	93	92.553	ENSAMEG00000003091	PYM1	93	92.553	Ailuropoda_melanoleuca
ENSPTRG00000005067	PYM1	99	61.111	ENSACIG00000012769	pym1	94	59.420	Amphilophus_citrinellus
ENSPTRG00000005067	PYM1	99	58.294	ENSAOCG00000021358	pym1	94	58.824	Amphiprion_ocellaris
ENSPTRG00000005067	PYM1	99	58.294	ENSAPEG00000022679	pym1	94	58.824	Amphiprion_percula
ENSPTRG00000005067	PYM1	99	57.944	ENSATEG00000024022	pym1	94	60.488	Anabas_testudineus
ENSPTRG00000005067	PYM1	94	67.980	ENSACAG00000005714	PYM1	94	67.980	Anolis_carolinensis
ENSPTRG00000005067	PYM1	100	99.015	ENSANAG00000036967	PYM1	100	99.015	Aotus_nancymaae
ENSPTRG00000005067	PYM1	100	57.339	ENSAMXG00000007650	pym1	94	60.194	Astyanax_mexicanus
ENSPTRG00000005067	PYM1	94	95.812	ENSBTAG00000031146	PYM1	94	95.812	Bos_taurus
ENSPTRG00000005067	PYM1	100	98.522	ENSCJAG00000041077	PYM1	100	98.522	Callithrix_jacchus
ENSPTRG00000005067	PYM1	100	97.537	ENSCAFG00000000076	PYM1	100	97.537	Canis_familiaris
ENSPTRG00000005067	PYM1	100	97.537	ENSCAFG00020026099	PYM1	100	97.537	Canis_lupus_dingo
ENSPTRG00000005067	PYM1	94	93.194	ENSCHIG00000026207	PYM1	94	93.194	Capra_hircus
ENSPTRG00000005067	PYM1	94	95.288	ENSTSYG00000000787	PYM1	94	95.288	Carlito_syrichta
ENSPTRG00000005067	PYM1	89	92.737	ENSCAPG00000010374	PYM1	94	93.296	Cavia_aperea
ENSPTRG00000005067	PYM1	94	93.717	ENSCPOG00000031546	PYM1	94	93.717	Cavia_porcellus
ENSPTRG00000005067	PYM1	100	99.507	ENSCCAG00000026187	PYM1	100	99.507	Cebus_capucinus
ENSPTRG00000005067	PYM1	100	99.015	ENSCATG00000018801	PYM1	100	99.015	Cercocebus_atys
ENSPTRG00000005067	PYM1	94	88.482	ENSCLAG00000007964	PYM1	94	88.482	Chinchilla_lanigera
ENSPTRG00000005067	PYM1	95	98.958	ENSCSAG00000005291	PYM1	99	98.454	Chlorocebus_sabaeus
ENSPTRG00000005067	PYM1	98	42.593	ENSCING00000006448	-	93	41.463	Ciona_intestinalis
ENSPTRG00000005067	PYM1	98	36.111	ENSCSAVG00000009805	-	89	40.976	Ciona_savignyi
ENSPTRG00000005067	PYM1	100	99.015	ENSCANG00000020338	-	100	99.015	Colobus_angolensis_palliatus
ENSPTRG00000005067	PYM1	98	90.404	ENSCANG00000019757	-	86	95.263	Colobus_angolensis_palliatus
ENSPTRG00000005067	PYM1	94	75.916	ENSCGRG00001004231	-	93	75.916	Cricetulus_griseus_chok1gshd
ENSPTRG00000005067	PYM1	94	90.576	ENSCGRG00001018051	-	94	90.576	Cricetulus_griseus_chok1gshd
ENSPTRG00000005067	PYM1	94	90.576	ENSCGRG00000012495	-	94	90.576	Cricetulus_griseus_crigri
ENSPTRG00000005067	PYM1	94	75.916	ENSCGRG00000018933	-	93	75.916	Cricetulus_griseus_crigri
ENSPTRG00000005067	PYM1	94	55.882	ENSCSEG00000021531	pym1	94	58.128	Cynoglossus_semilaevis
ENSPTRG00000005067	PYM1	99	57.820	ENSCVAG00000017360	pym1	82	60.000	Cyprinodon_variegatus
ENSPTRG00000005067	PYM1	99	57.500	ENSDARG00000046024	pym1	94	55.072	Danio_rerio
ENSPTRG00000005067	PYM1	94	92.670	ENSDNOG00000048414	PYM1	86	92.670	Dasypus_novemcinctus
ENSPTRG00000005067	PYM1	94	94.764	ENSDORG00000029448	Pym1	94	94.764	Dipodomys_ordii
ENSPTRG00000005067	PYM1	95	34.634	FBgn0034918	Pym	89	32.673	Drosophila_melanogaster
ENSPTRG00000005067	PYM1	89	88.889	ENSETEG00000004461	-	94	88.889	Echinops_telfairi
ENSPTRG00000005067	PYM1	94	96.842	ENSEASG00005002271	PYM1	86	96.842	Equus_asinus_asinus
ENSPTRG00000005067	PYM1	100	97.044	ENSECAG00000011870	PYM1	100	97.044	Equus_caballus
ENSPTRG00000005067	PYM1	96	58.291	ENSELUG00000024250	pym1	94	59.091	Esox_lucius
ENSPTRG00000005067	PYM1	100	97.044	ENSFCAG00000013967	PYM1	100	97.044	Felis_catus
ENSPTRG00000005067	PYM1	94	94.241	ENSFDAG00000006314	PYM1	94	94.241	Fukomys_damarensis
ENSPTRG00000005067	PYM1	94	58.911	ENSFHEG00000005884	pym1	94	58.911	Fundulus_heteroclitus
ENSPTRG00000005067	PYM1	94	57.436	ENSGMOG00000007239	pym1	93	58.462	Gadus_morhua
ENSPTRG00000005067	PYM1	94	70.256	ENSGALG00000046169	PYM1	94	70.256	Gallus_gallus
ENSPTRG00000005067	PYM1	99	61.033	ENSGAFG00000003280	pym1	93	61.194	Gambusia_affinis
ENSPTRG00000005067	PYM1	100	55.340	ENSGACG00000010703	pym1	94	55.897	Gasterosteus_aculeatus
ENSPTRG00000005067	PYM1	94	62.927	ENSGAGG00000001973	PYM1	88	64.216	Gopherus_agassizii
ENSPTRG00000005067	PYM1	100	99.510	ENSGGOG00000043246	PYM1	100	99.510	Gorilla_gorilla
ENSPTRG00000005067	PYM1	94	60.294	ENSHBUG00000012719	pym1	94	60.294	Haplochromis_burtoni
ENSPTRG00000005067	PYM1	94	95.288	ENSHGLG00000017155	PYM1	94	95.288	Heterocephalus_glaber_female
ENSPTRG00000005067	PYM1	94	95.288	ENSHGLG00100015341	PYM1	94	95.288	Heterocephalus_glaber_male
ENSPTRG00000005067	PYM1	99	57.619	ENSHCOG00000007987	pym1	80	58.081	Hippocampus_comes
ENSPTRG00000005067	PYM1	100	59.242	ENSIPUG00000005975	wibga	94	58.537	Ictalurus_punctatus
ENSPTRG00000005067	PYM1	100	96.552	ENSSTOG00000014206	PYM1	100	96.552	Ictidomys_tridecemlineatus
ENSPTRG00000005067	PYM1	94	90.576	ENSJJAG00000013338	Pym1	94	90.576	Jaculus_jaculus
ENSPTRG00000005067	PYM1	99	56.757	ENSKMAG00000006351	pym1	95	55.869	Kryptolebias_marmoratus
ENSPTRG00000005067	PYM1	99	59.615	ENSLBEG00000015707	pym1	94	59.296	Labrus_bergylta
ENSPTRG00000005067	PYM1	89	60.733	ENSLACG00000014398	PYM1	90	60.104	Latimeria_chalumnae
ENSPTRG00000005067	PYM1	94	93.717	ENSLAFG00000002369	PYM1	94	93.717	Loxodonta_africana
ENSPTRG00000005067	PYM1	100	99.015	ENSMFAG00000003048	PYM1	100	99.015	Macaca_fascicularis
ENSPTRG00000005067	PYM1	100	99.015	ENSMMUG00000011002	PYM1	100	99.015	Macaca_mulatta
ENSPTRG00000005067	PYM1	100	99.015	ENSMNEG00000034677	PYM1	100	99.015	Macaca_nemestrina
ENSPTRG00000005067	PYM1	100	99.015	ENSMLEG00000007971	PYM1	100	99.015	Mandrillus_leucophaeus
ENSPTRG00000005067	PYM1	99	55.455	ENSMAMG00000001588	pym1	94	57.346	Mastacembelus_armatus
ENSPTRG00000005067	PYM1	94	59.804	ENSMZEG00005026458	pym1	94	59.804	Maylandia_zebra
ENSPTRG00000005067	PYM1	94	90.576	ENSMAUG00000007318	Pym1	94	90.576	Mesocricetus_auratus
ENSPTRG00000005067	PYM1	100	96.552	ENSMICG00000032962	PYM1	100	96.552	Microcebus_murinus
ENSPTRG00000005067	PYM1	94	88.482	ENSMOCG00000010208	Pym1	94	88.482	Microtus_ochrogaster
ENSPTRG00000005067	PYM1	99	57.282	ENSMMOG00000009301	pym1	92	60.309	Mola_mola
ENSPTRG00000005067	PYM1	99	58.491	ENSMALG00000013496	pym1	94	58.209	Monopterus_albus
ENSPTRG00000005067	PYM1	94	90.576	MGP_CAROLIEiJ_G0015953	Pym1	94	90.576	Mus_caroli
ENSPTRG00000005067	PYM1	94	91.623	ENSMUSG00000064030	Pym1	94	91.623	Mus_musculus
ENSPTRG00000005067	PYM1	94	89.529	MGP_PahariEiJ_G0031131	Pym1	94	89.529	Mus_pahari
ENSPTRG00000005067	PYM1	94	91.623	MGP_SPRETEiJ_G0016778	Pym1	94	91.623	Mus_spretus
ENSPTRG00000005067	PYM1	100	97.537	ENSMPUG00000000931	PYM1	100	97.537	Mustela_putorius_furo
ENSPTRG00000005067	PYM1	92	91.892	ENSMLUG00000003586	PYM1	90	93.923	Myotis_lucifugus
ENSPTRG00000005067	PYM1	89	92.778	ENSNGAG00000019207	Pym1	88	92.265	Nannospalax_galili
ENSPTRG00000005067	PYM1	99	61.033	ENSNBRG00000006951	pym1	94	60.294	Neolamprologus_brichardi
ENSPTRG00000005067	PYM1	100	100.000	ENSNLEG00000017588	PYM1	100	100.000	Nomascus_leucogenys
ENSPTRG00000005067	PYM1	88	80.337	ENSMEUG00000001017	PYM1	93	80.226	Notamacropus_eugenii
ENSPTRG00000005067	PYM1	94	89.062	ENSOPRG00000007797	PYM1	94	89.062	Ochotona_princeps
ENSPTRG00000005067	PYM1	94	94.241	ENSODEG00000004289	PYM1	94	94.241	Octodon_degus
ENSPTRG00000005067	PYM1	94	59.420	ENSONIG00000016740	pym1	94	59.420	Oreochromis_niloticus
ENSPTRG00000005067	PYM1	93	89.474	ENSOCUG00000025969	PYM1	85	89.474	Oryctolagus_cuniculus
ENSPTRG00000005067	PYM1	99	61.722	ENSORLG00000030592	pym1	94	61.307	Oryzias_latipes
ENSPTRG00000005067	PYM1	99	61.137	ENSORLG00020011264	pym1	94	61.194	Oryzias_latipes_hni
ENSPTRG00000005067	PYM1	99	62.500	ENSORLG00015005287	pym1	94	62.121	Oryzias_latipes_hsok
ENSPTRG00000005067	PYM1	99	62.136	ENSOMEG00000022250	pym1	94	61.421	Oryzias_melastigma
ENSPTRG00000005067	PYM1	95	96.373	ENSOGAG00000007038	PYM1	95	96.373	Otolemur_garnettii
ENSPTRG00000005067	PYM1	94	93.717	ENSOARG00000010856	PYM1	94	93.717	Ovis_aries
ENSPTRG00000005067	PYM1	100	100.000	ENSPPAG00000043630	PYM1	100	100.000	Pan_paniscus
ENSPTRG00000005067	PYM1	94	95.288	ENSPPRG00000013243	PYM1	94	95.288	Panthera_pardus
ENSPTRG00000005067	PYM1	94	94.764	ENSPTIG00000017380	PYM1	94	94.764	Panthera_tigris_altaica
ENSPTRG00000005067	PYM1	100	98.522	ENSPANG00000009562	PYM1	100	98.522	Papio_anubis
ENSPTRG00000005067	PYM1	100	60.849	ENSPKIG00000006301	pym1	94	60.000	Paramormyrops_kingsleyae
ENSPTRG00000005067	PYM1	94	64.251	ENSPSIG00000003043	PYM1	94	64.390	Pelodiscus_sinensis
ENSPTRG00000005067	PYM1	100	62.201	ENSPMGG00000023161	pym1	94	62.437	Periophthalmus_magnuspinnatus
ENSPTRG00000005067	PYM1	94	89.005	ENSPEMG00000009372	Pym1	94	89.005	Peromyscus_maniculatus_bairdii
ENSPTRG00000005067	PYM1	92	80.108	ENSPCIG00000024658	PYM1	91	79.787	Phascolarctos_cinereus
ENSPTRG00000005067	PYM1	99	62.085	ENSPFOG00000008193	pym1	93	62.312	Poecilia_formosa
ENSPTRG00000005067	PYM1	99	61.137	ENSPLAG00000009228	pym1	93	61.307	Poecilia_latipinna
ENSPTRG00000005067	PYM1	99	61.137	ENSPMEG00000001505	pym1	93	61.307	Poecilia_mexicana
ENSPTRG00000005067	PYM1	100	98.039	ENSPPYG00000004635	PYM1	100	98.039	Pongo_abelii
ENSPTRG00000005067	PYM1	100	97.537	ENSPCOG00000019706	PYM1	100	97.537	Propithecus_coquereli
ENSPTRG00000005067	PYM1	97	96.923	ENSPVAG00000011437	PYM1	98	98.438	Pteropus_vampyrus
ENSPTRG00000005067	PYM1	94	60.591	ENSPNYG00000012871	pym1	94	60.099	Pundamilia_nyererei
ENSPTRG00000005067	PYM1	99	58.716	ENSPNAG00000018833	pym1	94	59.330	Pygocentrus_nattereri
ENSPTRG00000005067	PYM1	94	84.896	ENSRNOG00000058130	Pym1	94	84.896	Rattus_norvegicus
ENSPTRG00000005067	PYM1	92	67.914	ENSRNOG00000049415	AABR07055413.1	91	62.766	Rattus_norvegicus
ENSPTRG00000005067	PYM1	100	94.581	ENSRBIG00000033362	PYM1	100	94.581	Rhinopithecus_bieti
ENSPTRG00000005067	PYM1	100	99.015	ENSRROG00000043620	PYM1	100	99.015	Rhinopithecus_roxellana
ENSPTRG00000005067	PYM1	100	99.507	ENSSBOG00000029393	PYM1	100	99.507	Saimiri_boliviensis_boliviensis
ENSPTRG00000005067	PYM1	93	81.481	ENSSHAG00000008280	PYM1	93	81.481	Sarcophilus_harrisii
ENSPTRG00000005067	PYM1	93	64.062	ENSSFOG00015021475	pym1	94	63.590	Scleropages_formosus
ENSPTRG00000005067	PYM1	99	58.294	ENSSMAG00000020912	pym1	94	59.406	Scophthalmus_maximus
ENSPTRG00000005067	PYM1	99	56.279	ENSSDUG00000001807	pym1	94	58.937	Seriola_dumerili
ENSPTRG00000005067	PYM1	99	60.488	ENSSLDG00000013730	pym1	94	62.437	Seriola_lalandi_dorsalis
ENSPTRG00000005067	PYM1	89	91.667	ENSSARG00000009569	PYM1	94	91.667	Sorex_araneus
ENSPTRG00000005067	PYM1	93	63.500	ENSSPUG00000015059	PYM1	94	63.500	Sphenodon_punctatus
ENSPTRG00000005067	PYM1	99	57.477	ENSSPAG00000020100	pym1	94	57.547	Stegastes_partitus
ENSPTRG00000005067	PYM1	94	94.764	ENSSSCG00000040825	PYM1	94	94.764	Sus_scrofa
ENSPTRG00000005067	PYM1	99	59.135	ENSTRUG00000021367	pym1	93	60.204	Takifugu_rubripes
ENSPTRG00000005067	PYM1	99	57.971	ENSTNIG00000012534	pym1	92	56.186	Tetraodon_nigroviridis
ENSPTRG00000005067	PYM1	89	88.889	ENSTBEG00000004208	PYM1	94	88.889	Tupaia_belangeri
ENSPTRG00000005067	PYM1	95	96.354	ENSTTRG00000014971	PYM1	98	96.354	Tursiops_truncatus
ENSPTRG00000005067	PYM1	100	96.059	ENSUAMG00000014521	PYM1	100	96.059	Ursus_americanus
ENSPTRG00000005067	PYM1	94	91.667	ENSUMAG00000016241	PYM1	84	92.973	Ursus_maritimus
ENSPTRG00000005067	PYM1	100	96.552	ENSVVUG00000022749	PYM1	100	96.552	Vulpes_vulpes
ENSPTRG00000005067	PYM1	94	62.626	ENSXETG00000021850	pym1	94	63.500	Xenopus_tropicalis
ENSPTRG00000005067	PYM1	99	61.137	ENSXMAG00000011649	pym1	93	61.307	Xiphophorus_maculatus