EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000005317 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: small nuclear ribonucleoprotein polypeptide F
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 45879 bases
Position: chr12:98629972-98675850
Accession: 452143
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000083769	LSM	PF01423.22	5.1e-21	1	1
ENSPTRP00000090609	LSM	PF01423.22	1e-20	1	1
ENSPTRP00000063058	LSM	PF01423.22	3.8e-10	1	1
ENSPTRP00000009036	LSM	PF01423.22	1.2e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000009771	-	384	-	ENSPTRP00000009036	127 (aa)	-	H2Q6N0
ENSPTRT00000077209	-	273	-	ENSPTRP00000083769	90 (aa)	-	A0A2I3T3G8
ENSPTRT00000104632	-	201	-	ENSPTRP00000063058	66 (aa)	-	A0A2I3REI9
ENSPTRT00000103196	-	764	XM_009426036	ENSPTRP00000090609	115 (aa)	XP_009424311	A0A2I3TMZ2

Gene Model

Click here to download ENSPTRG00000005317's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000005317's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000005317	-	73	51.515	ENSPTRG00000016488	LSM6	83	51.515
ENSPTRG00000005317	-	69	39.560	ENSPTRG00000018106	SRSF3	96	39.560
ENSPTRG00000005317	-	53	41.791	ENSPTRG00000007823	RPS15A	52	41.791
ENSPTRG00000005317	-	87	74.359	ENSPTRG00000047717	-	91	74.667
ENSPTRG00000005317	-	62	48.101	ENSPTRG00000011852	GEMIN6	58	48.101
ENSPTRG00000005317	-	92	79.518	ENSPTRG00000043814	-	83	78.667

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000005317	-	98	96.923	ENSCHIG00000017139	-	96	96.923	Capra_hircus
ENSPTRG00000005317	-	100	93.701	ENSCATG00000003132	-	100	100.000	Cercocebus_atys
ENSPTRG00000005317	-	74	91.837	ENSCPBG00000001948	-	94	91.837	Chrysemys_picta_bellii
ENSPTRG00000005317	-	100	93.701	ENSCANG00000006758	-	100	100.000	Colobus_angolensis_palliatus
ENSPTRG00000005317	-	86	57.143	ENSFCAG00000037511	-	87	61.644	Felis_catus
ENSPTRG00000005317	-	94	72.581	ENSFCAG00000032773	-	92	72.581	Felis_catus
ENSPTRG00000005317	-	94	75.806	ENSGAGG00000014834	-	98	75.806	Gopherus_agassizii
ENSPTRG00000005317	-	88	81.034	ENSHBUG00000008160	-	90	81.034	Haplochromis_burtoni
ENSPTRG00000005317	-	62	97.561	ENSHCOG00000010425	-	63	97.561	Hippocampus_comes
ENSPTRG00000005317	-	100	94.488	ENSMFAG00000035517	-	100	100.000	Macaca_fascicularis
ENSPTRG00000005317	-	93	100.000	ENSMMUG00000009302	-	100	100.000	Macaca_mulatta
ENSPTRG00000005317	-	100	94.488	ENSMNEG00000030762	-	100	100.000	Macaca_nemestrina
ENSPTRG00000005317	-	100	93.701	ENSMLEG00000033558	-	100	100.000	Mandrillus_leucophaeus
ENSPTRG00000005317	-	100	96.850	ENSNLEG00000005835	-	100	100.000	Nomascus_leucogenys
ENSPTRG00000005317	-	80	96.226	ENSOGAG00000014320	-	100	96.226	Otolemur_garnettii
ENSPTRG00000005317	-	100	100.000	ENSPPAG00000003072	-	100	100.000	Pan_paniscus
ENSPTRG00000005317	-	69	74.194	ENSPPRG00000020147	-	100	76.190	Panthera_pardus
ENSPTRG00000005317	-	97	98.851	ENSPANG00000014632	-	99	98.851	Papio_anubis
ENSPTRG00000005317	-	94	98.824	ENSPCIG00000017205	-	100	100.000	Phascolarctos_cinereus
ENSPTRG00000005317	-	65	97.674	ENSPFOG00000020883	-	100	93.478	Poecilia_formosa
ENSPTRG00000005317	-	100	93.701	ENSRBIG00000028811	-	100	100.000	Rhinopithecus_bieti
ENSPTRG00000005317	-	100	94.488	ENSRROG00000031057	-	100	100.000	Rhinopithecus_roxellana
ENSPTRG00000005317	-	67	75.000	ENSVVUG00000003155	-	73	78.182	Vulpes_vulpes