EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000005400 (Gene tree)
Gene ID: 452208
Gene Symbol: PRDM4
Alias: -
Full Name: PR/SET domain 4
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 28449 bases
Position: chr12:110712617-110741065
Accession: 5544
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000009163	zf-C2H2	PF00096.26	7.8e-19	1	2
ENSPTRP00000009163	zf-C2H2	PF00096.26	7.8e-19	2	2
ENSPTRP00000009163	zf-met	PF12874.7	5.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000009910	-	4351	XM_001162965	ENSPTRP00000009163	801 (aa)	XP_001162965	K7CXK8

Gene Model

Click here to download ENSPTRG00000005400's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr04722	Neurotrophin signaling pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000005400's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000005400	PRDM4	100	99.750	ENSG00000110851	PRDM4	100	100.000	Homo_sapiens
ENSPTRG00000005400	PRDM4	99	97.372	ENSAMEG00000016174	PRDM4	99	97.372	Ailuropoda_melanoleuca
ENSPTRG00000005400	PRDM4	99	87.469	ENSAPLG00000009846	PRDM4	99	86.842	Anas_platyrhynchos
ENSPTRG00000005400	PRDM4	100	99.376	ENSANAG00000024800	PRDM4	100	99.376	Aotus_nancymaae
ENSPTRG00000005400	PRDM4	100	97.253	ENSBTAG00000012999	PRDM4	100	97.253	Bos_taurus
ENSPTRG00000005400	PRDM4	100	98.627	ENSCJAG00000015261	PRDM4	100	98.627	Callithrix_jacchus
ENSPTRG00000005400	PRDM4	100	97.378	ENSCAFG00000001788	PRDM4	100	97.378	Canis_familiaris
ENSPTRG00000005400	PRDM4	100	97.378	ENSCAFG00020004916	PRDM4	100	97.378	Canis_lupus_dingo
ENSPTRG00000005400	PRDM4	100	96.879	ENSCHIG00000019409	PRDM4	100	96.879	Capra_hircus
ENSPTRG00000005400	PRDM4	100	97.878	ENSTSYG00000009248	PRDM4	100	97.878	Carlito_syrichta
ENSPTRG00000005400	PRDM4	99	90.738	ENSCAPG00000013937	PRDM4	99	90.613	Cavia_aperea
ENSPTRG00000005400	PRDM4	99	90.186	ENSCPOG00000022385	PRDM4	100	90.062	Cavia_porcellus
ENSPTRG00000005400	PRDM4	100	99.501	ENSCCAG00000036033	PRDM4	100	99.501	Cebus_capucinus
ENSPTRG00000005400	PRDM4	100	99.376	ENSCATG00000044797	PRDM4	100	99.376	Cercocebus_atys
ENSPTRG00000005400	PRDM4	99	92.786	ENSCLAG00000007545	PRDM4	100	93.159	Chinchilla_lanigera
ENSPTRG00000005400	PRDM4	100	99.625	ENSCSAG00000002896	PRDM4	100	99.625	Chlorocebus_sabaeus
ENSPTRG00000005400	PRDM4	76	98.182	ENSCHOG00000001744	PRDM4	86	98.182	Choloepus_hoffmanni
ENSPTRG00000005400	PRDM4	99	88.331	ENSCPBG00000023187	PRDM4	100	87.955	Chrysemys_picta_bellii
ENSPTRG00000005400	PRDM4	100	99.501	ENSCANG00000021804	PRDM4	100	99.501	Colobus_angolensis_palliatus
ENSPTRG00000005400	PRDM4	99	93.159	ENSCGRG00001015102	-	100	92.786	Cricetulus_griseus_chok1gshd
ENSPTRG00000005400	PRDM4	96	93.161	ENSCGRG00000004044	-	100	92.774	Cricetulus_griseus_crigri
ENSPTRG00000005400	PRDM4	100	96.504	ENSDNOG00000032478	PRDM4	100	96.562	Dasypus_novemcinctus
ENSPTRG00000005400	PRDM4	99	82.183	ENSDORG00000015081	-	100	81.932	Dipodomys_ordii
ENSPTRG00000005400	PRDM4	93	45.798	ENSEBUG00000003775	prdm4	99	46.122	Eptatretus_burgeri
ENSPTRG00000005400	PRDM4	100	97.378	ENSECAG00000015423	PRDM4	100	97.378	Equus_caballus
ENSPTRG00000005400	PRDM4	94	93.342	ENSEEUG00000006569	PRDM4	99	92.943	Erinaceus_europaeus
ENSPTRG00000005400	PRDM4	99	60.510	ENSELUG00000015265	prdm4	93	62.857	Esox_lucius
ENSPTRG00000005400	PRDM4	100	97.878	ENSFCAG00000022478	PRDM4	100	97.878	Felis_catus
ENSPTRG00000005400	PRDM4	99	87.704	ENSFALG00000013342	PRDM4	100	87.202	Ficedula_albicollis
ENSPTRG00000005400	PRDM4	100	86.924	ENSGALG00000012619	PRDM4	100	86.301	Gallus_gallus
ENSPTRG00000005400	PRDM4	99	87.970	ENSGAGG00000002763	PRDM4	95	87.594	Gopherus_agassizii
ENSPTRG00000005400	PRDM4	99	99.625	ENSGGOG00000001244	PRDM4	99	99.625	Gorilla_gorilla
ENSPTRG00000005400	PRDM4	99	93.852	ENSHGLG00000004590	PRDM4	98	93.601	Heterocephalus_glaber_female
ENSPTRG00000005400	PRDM4	99	92.795	ENSHGLG00100007464	PRDM4	100	92.547	Heterocephalus_glaber_male
ENSPTRG00000005400	PRDM4	95	61.399	ENSIPUG00000024162	prdm4	93	61.749	Ictalurus_punctatus
ENSPTRG00000005400	PRDM4	100	96.754	ENSSTOG00000016168	PRDM4	100	96.754	Ictidomys_tridecemlineatus
ENSPTRG00000005400	PRDM4	82	93.548	ENSJJAG00000022448	-	95	93.548	Jaculus_jaculus
ENSPTRG00000005400	PRDM4	99	72.772	ENSLACG00000007452	PRDM4	99	73.020	Latimeria_chalumnae
ENSPTRG00000005400	PRDM4	78	41.953	ENSLOCG00000017092	prdm4	100	52.814	Lepisosteus_oculatus
ENSPTRG00000005400	PRDM4	98	96.827	ENSLAFG00000001483	PRDM4	100	96.827	Loxodonta_africana
ENSPTRG00000005400	PRDM4	100	99.750	ENSMFAG00000041862	PRDM4	100	99.750	Macaca_fascicularis
ENSPTRG00000005400	PRDM4	100	99.750	ENSMMUG00000015550	PRDM4	100	99.750	Macaca_mulatta
ENSPTRG00000005400	PRDM4	100	99.501	ENSMNEG00000032319	PRDM4	100	99.501	Macaca_nemestrina
ENSPTRG00000005400	PRDM4	100	99.625	ENSMLEG00000039607	PRDM4	100	99.625	Mandrillus_leucophaeus
ENSPTRG00000005400	PRDM4	99	79.500	ENSMGAG00000012815	PRDM4	100	78.875	Meleagris_gallopavo
ENSPTRG00000005400	PRDM4	100	96.629	ENSMICG00000007807	PRDM4	100	96.629	Microcebus_murinus
ENSPTRG00000005400	PRDM4	99	93.985	ENSMOCG00000000753	Prdm4	99	93.734	Microtus_ochrogaster
ENSPTRG00000005400	PRDM4	99	94.730	ENSMUSG00000035529	Prdm4	100	94.479	Mus_musculus
ENSPTRG00000005400	PRDM4	99	94.103	MGP_PahariEiJ_G0031398	Prdm4	100	94.155	Mus_pahari
ENSPTRG00000005400	PRDM4	99	95.358	MGP_SPRETEiJ_G0016505	Prdm4	100	95.426	Mus_spretus
ENSPTRG00000005400	PRDM4	99	91.272	ENSMPUG00000012238	PRDM4	99	91.272	Mustela_putorius_furo
ENSPTRG00000005400	PRDM4	99	97.118	ENSMLUG00000000767	PRDM4	99	97.118	Myotis_lucifugus
ENSPTRG00000005400	PRDM4	99	95.734	ENSNGAG00000018627	Prdm4	100	95.734	Nannospalax_galili
ENSPTRG00000005400	PRDM4	100	99.625	ENSNLEG00000006748	PRDM4	100	99.625	Nomascus_leucogenys
ENSPTRG00000005400	PRDM4	89	88.967	ENSMEUG00000004495	PRDM4	89	88.967	Notamacropus_eugenii
ENSPTRG00000005400	PRDM4	88	95.238	ENSOPRG00000010192	PRDM4	89	95.238	Ochotona_princeps
ENSPTRG00000005400	PRDM4	99	90.500	ENSODEG00000014750	PRDM4	99	90.375	Octodon_degus
ENSPTRG00000005400	PRDM4	100	90.886	ENSOANG00000005526	PRDM4	100	90.886	Ornithorhynchus_anatinus
ENSPTRG00000005400	PRDM4	93	96.853	ENSOCUG00000012859	PRDM4	96	96.853	Oryctolagus_cuniculus
ENSPTRG00000005400	PRDM4	99	97.867	ENSOGAG00000011945	PRDM4	100	97.867	Otolemur_garnettii
ENSPTRG00000005400	PRDM4	100	96.629	ENSOARG00000017955	PRDM4	100	96.629	Ovis_aries
ENSPTRG00000005400	PRDM4	100	99.750	ENSPPAG00000038438	PRDM4	100	99.750	Pan_paniscus
ENSPTRG00000005400	PRDM4	100	97.878	ENSPPRG00000004144	PRDM4	100	97.878	Panthera_pardus
ENSPTRG00000005400	PRDM4	100	97.878	ENSPTIG00000005847	PRDM4	100	97.878	Panthera_tigris_altaica
ENSPTRG00000005400	PRDM4	100	99.750	ENSPANG00000022084	PRDM4	100	99.750	Papio_anubis
ENSPTRG00000005400	PRDM4	99	59.810	ENSPKIG00000000875	prdm4	99	60.523	Paramormyrops_kingsleyae
ENSPTRG00000005400	PRDM4	91	81.559	ENSPSIG00000012066	PRDM4	100	81.559	Pelodiscus_sinensis
ENSPTRG00000005400	PRDM4	99	95.609	ENSPEMG00000014598	Prdm4	100	95.609	Peromyscus_maniculatus_bairdii
ENSPTRG00000005400	PRDM4	100	89.055	ENSPCIG00000009471	PRDM4	100	89.055	Phascolarctos_cinereus
ENSPTRG00000005400	PRDM4	100	99.625	ENSPPYG00000004913	PRDM4	100	99.625	Pongo_abelii
ENSPTRG00000005400	PRDM4	83	95.833	ENSPCAG00000009987	PRDM4	83	95.833	Procavia_capensis
ENSPTRG00000005400	PRDM4	100	96.879	ENSPCOG00000021060	PRDM4	100	96.879	Propithecus_coquereli
ENSPTRG00000005400	PRDM4	100	96.883	ENSPVAG00000001596	PRDM4	100	96.883	Pteropus_vampyrus
ENSPTRG00000005400	PRDM4	99	93.985	ENSRNOG00000004962	Prdm4	100	93.734	Rattus_norvegicus
ENSPTRG00000005400	PRDM4	100	99.501	ENSRBIG00000035488	PRDM4	100	99.501	Rhinopithecus_bieti
ENSPTRG00000005400	PRDM4	100	99.625	ENSRROG00000012779	PRDM4	100	99.625	Rhinopithecus_roxellana
ENSPTRG00000005400	PRDM4	100	99.126	ENSSBOG00000000403	PRDM4	100	99.126	Saimiri_boliviensis_boliviensis
ENSPTRG00000005400	PRDM4	99	63.793	ENSSFOG00015023358	prdm4	99	63.793	Scleropages_formosus
ENSPTRG00000005400	PRDM4	100	97.129	ENSSSCG00000000160	PRDM4	100	97.129	Sus_scrofa
ENSPTRG00000005400	PRDM4	99	87.594	ENSTGUG00000010962	-	99	87.093	Taeniopygia_guttata
ENSPTRG00000005400	PRDM4	73	89.932	ENSTBEG00000001732	PRDM4	84	89.932	Tupaia_belangeri
ENSPTRG00000005400	PRDM4	100	96.754	ENSTTRG00000011056	PRDM4	100	96.754	Tursiops_truncatus
ENSPTRG00000005400	PRDM4	100	97.753	ENSUAMG00000022796	PRDM4	100	97.753	Ursus_americanus
ENSPTRG00000005400	PRDM4	100	97.753	ENSUMAG00000017231	PRDM4	100	97.753	Ursus_maritimus
ENSPTRG00000005400	PRDM4	99	97.616	ENSVPAG00000002215	PRDM4	100	97.616	Vicugna_pacos
ENSPTRG00000005400	PRDM4	100	97.378	ENSVVUG00000023397	PRDM4	100	97.378	Vulpes_vulpes