EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPTRG00000005531 (Gene tree)
Gene ID
452305
Gene Symbol
MSI1
Alias
-
Full Name
musashi RNA binding protein 1
Gene Type
protein_coding
Species
Pan_troglodytes
Status
putative
Strand
Minus strand
Length
27868 bases
Position
chr12:123571455-123599322
Accession
13253
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPTRP00000009387RRM_1PF00076.228.6e-3412
ENSPTRP00000009387RRM_1PF00076.228.6e-3422
ENSPTRP00000074372RRM_1PF00076.229.5e-3412
ENSPTRP00000074372RRM_1PF00076.229.5e-3422
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPTRT00000010152-1059XM_016924380ENSPTRP00000009387352 (aa)XP_016779869H2Q708
ENSPTRT00000083024-2975XM_016924378ENSPTRP00000074372362 (aa)XP_016779867A0A2I3SD00
Gene Model
Click here to download ENSPTRG00000005531's gene model file
Pathways
Pathway IDPathway NameSource
ptr03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000005531's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPTRG00000005531MSI15438.806ENSPTRG00000052830-7839.806
ENSPTRG00000005531MSI15333.721ENSPTRG00000048576-6833.133
ENSPTRG00000005531MSI15144.531ENSPTRG00000031176-7436.264
ENSPTRG00000005531MSI15142.308ENSPTRG00000049417HNRNPA17641.584
ENSPTRG00000005531MSI16936.471ENSPTRG00000013661RBM387942.373
ENSPTRG00000005531MSI15140.110ENSPTRG00000032634-7537.344
ENSPTRG00000005531MSI15637.179ENSPTRG00000015707TRA2B6937.179
ENSPTRG00000005531MSI15340.686ENSPTRG00000012676HNRNPA37038.258
ENSPTRG00000005531MSI19471.471ENSPTRG00000009437MSI210073.214
ENSPTRG00000005531MSI15141.667ENSPTRG00000048246-7041.667
ENSPTRG00000005531MSI15146.111ENSPTRG00000017601HNRNPAB7539.216
ENSPTRG00000005531MSI17235.688ENSPTRG00000010199DAZAP16934.899
ENSPTRG00000005531MSI15141.111ENSPTRG00000048252-5141.111
ENSPTRG00000005531MSI15343.590ENSPTRG00000016215HNRNPD7240.161
ENSPTRG00000005531MSI15936.842ENSPTRG00000045845-6236.842
ENSPTRG00000005531MSI15539.320ENSPTRG00000018253-7239.614
ENSPTRG00000005531MSI15043.750ENSPTRG00000019002HNRNPA2B17543.750
ENSPTRG00000005531MSI15340.314ENSPTRG00000052291-6441.799
ENSPTRG00000005531MSI15333.721ENSPTRG00000000136TARDBP6833.133
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPTRG00000005531MSI1100100.000ENSG00000135097MSI1100100.000Homo_sapiens
ENSPTRG00000005531MSI110084.254ENSAPOG00000023458-10084.254Acanthochromis_polyacanthus
ENSPTRG00000005531MSI110083.791ENSAPOG00000003191MSI110083.791Acanthochromis_polyacanthus
ENSPTRG00000005531MSI19883.288ENSAMEG00000013302MSI110083.288Ailuropoda_melanoleuca
ENSPTRG00000005531MSI19484.953ENSACIG00000017754-7884.953Amphilophus_citrinellus
ENSPTRG00000005531MSI19879.217ENSAOCG00000009031-9580.120Amphiprion_ocellaris
ENSPTRG00000005531MSI110083.791ENSAOCG00000003804MSI110083.791Amphiprion_ocellaris
ENSPTRG00000005531MSI110084.254ENSAPEG00000006857-8484.254Amphiprion_percula
ENSPTRG00000005531MSI110083.791ENSAPEG00000003245MSI110083.791Amphiprion_percula
ENSPTRG00000005531MSI110078.689ENSATEG00000023779-10078.689Anabas_testudineus
ENSPTRG00000005531MSI110080.435ENSATEG00000017059MSI110080.435Anabas_testudineus
ENSPTRG00000005531MSI110096.419ENSACAG00000002762MSI110096.419Anolis_carolinensis
ENSPTRG00000005531MSI1100100.000ENSANAG00000027151MSI1100100.000Aotus_nancymaae
ENSPTRG00000005531MSI18296.309ENSANAG00000027901-9296.309Aotus_nancymaae
ENSPTRG00000005531MSI110083.242ENSACLG00000011230MSI110083.242Astatotilapia_calliptera
ENSPTRG00000005531MSI110083.978ENSACLG00000000117-10085.337Astatotilapia_calliptera
ENSPTRG00000005531MSI19483.735ENSAMXG00000038960msi17683.735Astyanax_mexicanus
ENSPTRG00000005531MSI1100100.000ENSBTAG00000009800MSI1100100.000Bos_taurus
ENSPTRG00000005531MSI1100100.000ENSCJAG00000008578MSI1100100.000Callithrix_jacchus
ENSPTRG00000005531MSI110099.724ENSCAFG00000010283MSI110099.724Canis_familiaris
ENSPTRG00000005531MSI194100.000ENSCAFG00020020585MSI1100100.000Canis_lupus_dingo
ENSPTRG00000005531MSI110094.580ENSCHIG00000024304MSI110094.580Capra_hircus
ENSPTRG00000005531MSI194100.000ENSTSYG00000033949MSI195100.000Carlito_syrichta
ENSPTRG00000005531MSI19493.040ENSCAPG00000003919MSI18989.776Cavia_aperea
ENSPTRG00000005531MSI198100.000ENSCPOG00000012361MSI1100100.000Cavia_porcellus
ENSPTRG00000005531MSI1100100.000ENSCCAG00000035567MSI1100100.000Cebus_capucinus
ENSPTRG00000005531MSI1100100.000ENSCATG00000030019MSI1100100.000Cercocebus_atys
ENSPTRG00000005531MSI198100.000ENSCLAG00000011329MSI1100100.000Chinchilla_lanigera
ENSPTRG00000005531MSI17596.390ENSCSAG00000002265MSI19696.390Chlorocebus_sabaeus
ENSPTRG00000005531MSI110095.856ENSCPBG00000011349MSI110095.856Chrysemys_picta_bellii
ENSPTRG00000005531MSI198100.000ENSCANG00000040651MSI1100100.000Colobus_angolensis_palliatus
ENSPTRG00000005531MSI1100100.000ENSCGRG00001018883Msi1100100.000Cricetulus_griseus_chok1gshd
ENSPTRG00000005531MSI194100.000ENSCGRG00000002191Msi172100.000Cricetulus_griseus_crigri
ENSPTRG00000005531MSI110083.149ENSCSEG00000008352-10083.149Cynoglossus_semilaevis
ENSPTRG00000005531MSI19880.363ENSCSEG00000011032MSI110080.363Cynoglossus_semilaevis
ENSPTRG00000005531MSI110083.516ENSCSEG00000005834-10083.516Cynoglossus_semilaevis
ENSPTRG00000005531MSI15061.194ENSCVAG00000017430zgc:1107969461.194Cyprinodon_variegatus
ENSPTRG00000005531MSI110084.254ENSCVAG00000009100MSI110084.254Cyprinodon_variegatus
ENSPTRG00000005531MSI16468.398ENSCVAG00000017463-8968.398Cyprinodon_variegatus
ENSPTRG00000005531MSI18082.096ENSDARG00000102015CABZ01037298.18982.096Danio_rerio
ENSPTRG00000005531MSI19883.648ENSDARG00000010710msi110085.022Danio_rerio
ENSPTRG00000005531MSI19889.970ENSDNOG00000005713MSI19189.970Dasypus_novemcinctus
ENSPTRG00000005531MSI19899.102ENSDORG00000005610Msi19995.480Dipodomys_ordii
ENSPTRG00000005531MSI19895.732ENSETEG00000004756MSI110095.732Echinops_telfairi
ENSPTRG00000005531MSI1100100.000ENSEASG00005004736MSI1100100.000Equus_asinus_asinus
ENSPTRG00000005531MSI1100100.000ENSECAG00000017526MSI1100100.000Equus_caballus
ENSPTRG00000005531MSI19481.791ENSELUG00000023280-10081.493Esox_lucius
ENSPTRG00000005531MSI19878.177ENSELUG00000023219MSI19280.387Esox_lucius
ENSPTRG00000005531MSI1100100.000ENSFCAG00000011007MSI1100100.000Felis_catus
ENSPTRG00000005531MSI19895.820ENSFALG00000007574MSI110095.820Ficedula_albicollis
ENSPTRG00000005531MSI19899.695ENSFDAG00000019586MSI110099.695Fukomys_damarensis
ENSPTRG00000005531MSI110084.530ENSFHEG00000022446MSI110084.530Fundulus_heteroclitus
ENSPTRG00000005531MSI110083.791ENSFHEG00000003560-10083.791Fundulus_heteroclitus
ENSPTRG00000005531MSI110076.584ENSGMOG00000017838-10076.584Gadus_morhua
ENSPTRG00000005531MSI110082.597ENSGMOG00000001006MSI19982.320Gadus_morhua
ENSPTRG00000005531MSI19495.238ENSGALG00000007227MSI19886.957Gallus_gallus
ENSPTRG00000005531MSI110066.761ENSGAFG00000005860-10066.761Gambusia_affinis
ENSPTRG00000005531MSI19885.380ENSGAFG00000021522MSI19485.380Gambusia_affinis
ENSPTRG00000005531MSI110080.663ENSGACG00000008674-10080.663Gasterosteus_aculeatus
ENSPTRG00000005531MSI110083.425ENSGACG00000012679MSI110083.425Gasterosteus_aculeatus
ENSPTRG00000005531MSI110095.580ENSGAGG00000016037MSI110095.580Gopherus_agassizii
ENSPTRG00000005531MSI194100.000ENSGGOG00000010328MSI1100100.000Gorilla_gorilla
ENSPTRG00000005531MSI110083.978ENSHBUG00000011841-10083.978Haplochromis_burtoni
ENSPTRG00000005531MSI110083.242ENSHBUG00000021921MSI110083.242Haplochromis_burtoni
ENSPTRG00000005531MSI110099.724ENSHGLG00000012782MSI110099.724Heterocephalus_glaber_female
ENSPTRG00000005531MSI19899.695ENSHGLG00100016848MSI110099.695Heterocephalus_glaber_male
ENSPTRG00000005531MSI19883.082ENSHCOG00000012019MSI110083.082Hippocampus_comes
ENSPTRG00000005531MSI110078.689ENSHCOG00000012067-10078.689Hippocampus_comes
ENSPTRG00000005531MSI110082.320ENSIPUG00000001976msi110082.320Ictalurus_punctatus
ENSPTRG00000005531MSI194100.000ENSSTOG00000009799MSI1100100.000Ictidomys_tridecemlineatus
ENSPTRG00000005531MSI110084.530ENSJJAG00000010643-10084.375Jaculus_jaculus
ENSPTRG00000005531MSI1100100.000ENSJJAG00000010463Msi1100100.000Jaculus_jaculus
ENSPTRG00000005531MSI19885.801ENSKMAG00000019877-10085.801Kryptolebias_marmoratus
ENSPTRG00000005531MSI110083.702ENSKMAG00000011251MSI110083.702Kryptolebias_marmoratus
ENSPTRG00000005531MSI110083.242ENSLBEG00000001375-10083.242Labrus_bergylta
ENSPTRG00000005531MSI110084.254ENSLBEG00000008789MSI110084.254Labrus_bergylta
ENSPTRG00000005531MSI19887.427ENSLACG00000018287MSI110087.427Latimeria_chalumnae
ENSPTRG00000005531MSI15170.000ENSLOCG00000008618zgc:1107967170.000Lepisosteus_oculatus
ENSPTRG00000005531MSI19189.426ENSLAFG00000009412MSI110089.426Loxodonta_africana
ENSPTRG00000005531MSI198100.000ENSMFAG00000001798MSI1100100.000Macaca_fascicularis
ENSPTRG00000005531MSI19798.291ENSMMUG00000031527MSI19798.291Macaca_mulatta
ENSPTRG00000005531MSI1100100.000ENSMNEG00000040034MSI1100100.000Macaca_nemestrina
ENSPTRG00000005531MSI198100.000ENSMLEG00000003921MSI1100100.000Mandrillus_leucophaeus
ENSPTRG00000005531MSI110083.425ENSMAMG00000002279MSI110083.425Mastacembelus_armatus
ENSPTRG00000005531MSI19884.940ENSMAMG00000018426-10083.791Mastacembelus_armatus
ENSPTRG00000005531MSI110083.978ENSMZEG00005000340-10083.978Maylandia_zebra
ENSPTRG00000005531MSI110083.242ENSMZEG00005026892MSI110083.242Maylandia_zebra
ENSPTRG00000005531MSI16698.817ENSMGAG00000016518-10098.817Meleagris_gallopavo
ENSPTRG00000005531MSI171100.000ENSMAUG00000016820Msi1100100.000Mesocricetus_auratus
ENSPTRG00000005531MSI1100100.000ENSMICG00000033181MSI1100100.000Microcebus_murinus
ENSPTRG00000005531MSI110099.724ENSMOCG00000002286Msi110099.724Microtus_ochrogaster
ENSPTRG00000005531MSI19876.316ENSMMOG00000010492MSI19478.614Mola_mola
ENSPTRG00000005531MSI19883.801ENSMMOG00000012265-9783.801Mola_mola
ENSPTRG00000005531MSI19168.373ENSMODG00000003189-10068.373Monodelphis_domestica
ENSPTRG00000005531MSI110083.978ENSMALG00000017889MSI110083.978Monopterus_albus
ENSPTRG00000005531MSI19885.044ENSMALG00000001426-10085.044Monopterus_albus
ENSPTRG00000005531MSI110099.448MGP_CAROLIEiJ_G0027626Msi110099.448Mus_caroli
ENSPTRG00000005531MSI110099.448ENSMUSG00000054256Msi110099.448Mus_musculus
ENSPTRG00000005531MSI110099.171MGP_PahariEiJ_G0024206Msi110099.171Mus_pahari
ENSPTRG00000005531MSI110099.448MGP_SPRETEiJ_G0028624Msi110099.448Mus_spretus
ENSPTRG00000005531MSI194100.000ENSMPUG00000003168MSI1100100.000Mustela_putorius_furo
ENSPTRG00000005531MSI19490.179ENSMLUG00000010313MSI110090.179Myotis_lucifugus
ENSPTRG00000005531MSI19893.855ENSNGAG00000014508Msi19793.855Nannospalax_galili
ENSPTRG00000005531MSI18877.432ENSNBRG00000018012MSI19977.432Neolamprologus_brichardi
ENSPTRG00000005531MSI110083.978ENSNBRG00000000841-10083.978Neolamprologus_brichardi
ENSPTRG00000005531MSI19189.634ENSNLEG00000015636MSI110089.634Nomascus_leucogenys
ENSPTRG00000005531MSI19477.744ENSMEUG00000015759MSI110077.744Notamacropus_eugenii
ENSPTRG00000005531MSI19492.063ENSOPRG00000016879MSI110092.063Ochotona_princeps
ENSPTRG00000005531MSI198100.000ENSODEG00000006328MSI1100100.000Octodon_degus
ENSPTRG00000005531MSI110083.978ENSONIG00000011182MSI110083.978Oreochromis_niloticus
ENSPTRG00000005531MSI110083.516ENSONIG00000019452-10083.516Oreochromis_niloticus
ENSPTRG00000005531MSI19499.678ENSOCUG00000027716MSI110099.678Oryctolagus_cuniculus
ENSPTRG00000005531MSI110083.791ENSORLG00000029593MSI110083.791Oryzias_latipes
ENSPTRG00000005531MSI110084.530ENSORLG00000019978-10084.530Oryzias_latipes
ENSPTRG00000005531MSI110084.530ENSORLG00020001208-7184.530Oryzias_latipes_hni
ENSPTRG00000005531MSI110083.791ENSORLG00020008266MSI19985.241Oryzias_latipes_hni
ENSPTRG00000005531MSI110083.791ENSORLG00015003916MSI19985.241Oryzias_latipes_hsok
ENSPTRG00000005531MSI110084.530ENSORLG00015013672-7683.239Oryzias_latipes_hsok
ENSPTRG00000005531MSI19886.842ENSOMEG00000002272-10084.615Oryzias_melastigma
ENSPTRG00000005531MSI110084.807ENSOMEG00000017536MSI110084.807Oryzias_melastigma
ENSPTRG00000005531MSI19995.604ENSOGAG00000003847MSI19995.604Otolemur_garnettii
ENSPTRG00000005531MSI19496.061ENSOARG00000012097MSI110096.061Ovis_aries
ENSPTRG00000005531MSI198100.000ENSPPAG00000043073MSI1100100.000Pan_paniscus
ENSPTRG00000005531MSI1100100.000ENSPPRG00000000370MSI1100100.000Panthera_pardus
ENSPTRG00000005531MSI194100.000ENSPTIG00000008913MSI1100100.000Panthera_tigris_altaica
ENSPTRG00000005531MSI110099.724ENSPANG00000006335MSI110099.724Papio_anubis
ENSPTRG00000005531MSI19685.879ENSPKIG00000023575-10083.978Paramormyrops_kingsleyae
ENSPTRG00000005531MSI110085.083ENSPKIG00000016497MSI110085.083Paramormyrops_kingsleyae
ENSPTRG00000005531MSI18092.576ENSPSIG00000009621-10092.576Pelodiscus_sinensis
ENSPTRG00000005531MSI19892.105ENSPSIG00000011608-9392.105Pelodiscus_sinensis
ENSPTRG00000005531MSI19868.862ENSPMGG00000007743-8972.700Periophthalmus_magnuspinnatus
ENSPTRG00000005531MSI19484.013ENSPMGG00000000514MSI19784.013Periophthalmus_magnuspinnatus
ENSPTRG00000005531MSI19994.958ENSPEMG00000010491Msi19994.958Peromyscus_maniculatus_bairdii
ENSPTRG00000005531MSI110084.254ENSPFOG00000013113MSI110084.254Poecilia_formosa
ENSPTRG00000005531MSI110083.791ENSPFOG00000008319-8683.791Poecilia_formosa
ENSPTRG00000005531MSI110083.791ENSPLAG00000012431-9783.791Poecilia_latipinna
ENSPTRG00000005531MSI110084.254ENSPLAG00000014025-10084.254Poecilia_latipinna
ENSPTRG00000005531MSI110084.254ENSPMEG00000012796MSI110084.254Poecilia_mexicana
ENSPTRG00000005531MSI110083.242ENSPMEG00000007025-9380.781Poecilia_mexicana
ENSPTRG00000005531MSI19880.233ENSPREG00000021416-9581.845Poecilia_reticulata
ENSPTRG00000005531MSI16181.776ENSPREG00000014574-10081.776Poecilia_reticulata
ENSPTRG00000005531MSI110099.171ENSPPYG00000005027MSI110099.171Pongo_abelii
ENSPTRG00000005531MSI19876.923ENSPCAG00000002300MSI110076.923Procavia_capensis
ENSPTRG00000005531MSI1100100.000ENSPCOG00000017341MSI1100100.000Propithecus_coquereli
ENSPTRG00000005531MSI19882.927ENSPVAG00000002225MSI110082.927Pteropus_vampyrus
ENSPTRG00000005531MSI110083.978ENSPNYG00000002529-10083.978Pundamilia_nyererei
ENSPTRG00000005531MSI110083.242ENSPNYG00000004379MSI110083.242Pundamilia_nyererei
ENSPTRG00000005531MSI110082.597ENSPNAG00000019337msi110082.597Pygocentrus_nattereri
ENSPTRG00000005531MSI19499.678ENSRNOG00000001156Msi110099.678Rattus_norvegicus
ENSPTRG00000005531MSI194100.000ENSRBIG00000036889MSI1100100.000Rhinopithecus_bieti
ENSPTRG00000005531MSI19499.697ENSRROG00000041076MSI19399.697Rhinopithecus_roxellana
ENSPTRG00000005531MSI198100.000ENSSBOG00000030259MSI198100.000Saimiri_boliviensis_boliviensis
ENSPTRG00000005531MSI19487.255ENSSHAG00000006834MSI110087.255Sarcophilus_harrisii
ENSPTRG00000005531MSI19886.103ENSSFOG00015005350MSI110086.103Scleropages_formosus
ENSPTRG00000005531MSI19886.842ENSSFOG00015014964-9586.842Scleropages_formosus
ENSPTRG00000005531MSI19884.013ENSSMAG00000018824MSI19784.013Scophthalmus_maximus
ENSPTRG00000005531MSI19485.818ENSSMAG00000009156-7185.818Scophthalmus_maximus
ENSPTRG00000005531MSI110083.516ENSSDUG00000022697-10083.516Seriola_dumerili
ENSPTRG00000005531MSI110084.254ENSSDUG00000001027MSI110084.254Seriola_dumerili
ENSPTRG00000005531MSI110084.254ENSSLDG00000016832MSI110084.254Seriola_lalandi_dorsalis
ENSPTRG00000005531MSI19883.178ENSSLDG00000018706-9784.472Seriola_lalandi_dorsalis
ENSPTRG00000005531MSI110095.028ENSSPUG00000015741MSI110095.028Sphenodon_punctatus
ENSPTRG00000005531MSI16268.750ENSSPAG00000014085-10071.963Stegastes_partitus
ENSPTRG00000005531MSI15474.375ENSSPAG00000015573zgc:1107968274.375Stegastes_partitus
ENSPTRG00000005531MSI19886.217ENSSPAG00000013098-10086.217Stegastes_partitus
ENSPTRG00000005531MSI110099.724ENSSSCG00000029365MSI110099.724Sus_scrofa
ENSPTRG00000005531MSI19896.784ENSTGUG00000009534MSI110096.784Taeniopygia_guttata
ENSPTRG00000005531MSI19478.997ENSTRUG00000015636-7978.683Takifugu_rubripes
ENSPTRG00000005531MSI18180.952ENSTRUG00000016249MSI110073.783Takifugu_rubripes
ENSPTRG00000005531MSI19862.432ENSTNIG00000019814-9962.432Tetraodon_nigroviridis
ENSPTRG00000005531MSI110079.178ENSTNIG00000011469MSI110079.178Tetraodon_nigroviridis
ENSPTRG00000005531MSI19489.377ENSTBEG00000007182MSI110089.377Tupaia_belangeri
ENSPTRG00000005531MSI19881.287ENSTTRG00000005663MSI110081.287Tursiops_truncatus
ENSPTRG00000005531MSI167100.000ENSUAMG00000015514MSI19492.694Ursus_americanus
ENSPTRG00000005531MSI19494.788ENSUMAG00000006176MSI19094.788Ursus_maritimus
ENSPTRG00000005531MSI19899.099ENSVVUG00000020993MSI110099.099Vulpes_vulpes
ENSPTRG00000005531MSI110091.209ENSXETG00000012216msi110091.257Xenopus_tropicalis
ENSPTRG00000005531MSI19473.795ENSXCOG00000017605MSI18973.795Xiphophorus_couchianus
ENSPTRG00000005531MSI110084.254ENSXMAG00000027103MSI110075.766Xiphophorus_maculatus
ENSPTRG00000005531MSI110083.516ENSXMAG00000018237-10083.516Xiphophorus_maculatus

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