EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000005597 (Gene tree)
Gene ID: 467148
Gene Symbol: SBNO1
Alias: -
Full Name: strawberry notch homolog 1
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 58632 bases
Position: chr12:126744815-126803446
Accession: 13440
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000009517	ResIII	PF04851.15	1.4e-07	1	1
ENSPTRP00000076302	ResIII	PF04851.15	1.4e-07	1	1
ENSPTRP00000074993	ResIII	PF04851.15	1.5e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000088965	-	8073	XM_016924530	ENSPTRP00000074993	1393 (aa)	XP_016780019	A0A2J8MCW7
ENSPTRT00000082281	-	7959	XM_016924536	ENSPTRP00000076302	1357 (aa)	XP_016780025	A0A2I3SIJ6
ENSPTRT00000010285	-	3813	-	ENSPTRP00000009517	1270 (aa)	-	H2Q757

Gene Model

Click here to download ENSPTRG00000005597's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000005597's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000005597	SBNO1	82	58.019	ENSPTRG00000010185	SBNO2	72	68.481

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000005597	SBNO1	100	99.928	ENSG00000139697	SBNO1	100	99.928	Homo_sapiens
ENSPTRG00000005597	SBNO1	83	83.214	ENSAPOG00000003196	sbno1	98	81.083	Acanthochromis_polyacanthus
ENSPTRG00000005597	SBNO1	100	97.923	ENSAMEG00000015151	SBNO1	100	97.923	Ailuropoda_melanoleuca
ENSPTRG00000005597	SBNO1	99	81.930	ENSACIG00000008088	sbno1	95	81.930	Amphilophus_citrinellus
ENSPTRG00000005597	SBNO1	99	82.500	ENSAOCG00000014859	sbno1	99	75.070	Amphiprion_ocellaris
ENSPTRG00000005597	SBNO1	99	82.500	ENSAPEG00000006069	sbno1	99	75.070	Amphiprion_percula
ENSPTRG00000005597	SBNO1	99	84.810	ENSATEG00000006667	sbno1	95	84.810	Anabas_testudineus
ENSPTRG00000005597	SBNO1	99	95.298	ENSAPLG00000015674	SBNO1	100	91.966	Anas_platyrhynchos
ENSPTRG00000005597	SBNO1	99	93.907	ENSACAG00000015441	SBNO1	84	94.245	Anolis_carolinensis
ENSPTRG00000005597	SBNO1	100	98.708	ENSANAG00000029958	-	100	98.708	Aotus_nancymaae
ENSPTRG00000005597	SBNO1	99	76.120	ENSACLG00000024913	sbno1	99	76.281	Astatotilapia_calliptera
ENSPTRG00000005597	SBNO1	99	87.027	ENSAMXG00000019473	sbno1	95	87.027	Astyanax_mexicanus
ENSPTRG00000005597	SBNO1	99	98.204	ENSBTAG00000020505	SBNO1	99	98.204	Bos_taurus
ENSPTRG00000005597	SBNO1	100	98.851	ENSCJAG00000016599	SBNO1	100	98.851	Callithrix_jacchus
ENSPTRG00000005597	SBNO1	99	99.099	ENSCAFG00000007503	SBNO1	100	98.065	Canis_familiaris
ENSPTRG00000005597	SBNO1	100	97.717	ENSCAFG00020015363	SBNO1	100	97.717	Canis_lupus_dingo
ENSPTRG00000005597	SBNO1	99	98.345	ENSCHIG00000008382	SBNO1	99	98.732	Capra_hircus
ENSPTRG00000005597	SBNO1	99	99.819	ENSTSYG00000012749	SBNO1	100	98.526	Carlito_syrichta
ENSPTRG00000005597	SBNO1	97	99.281	ENSCAPG00000000384	SBNO1	100	97.596	Cavia_aperea
ENSPTRG00000005597	SBNO1	99	99.277	ENSCPOG00000008109	SBNO1	100	98.399	Cavia_porcellus
ENSPTRG00000005597	SBNO1	99	95.640	ENSCCAG00000035316	SBNO1	99	95.504	Cebus_capucinus
ENSPTRG00000005597	SBNO1	99	100.000	ENSCATG00000008239	SBNO1	99	99.820	Cercocebus_atys
ENSPTRG00000005597	SBNO1	99	99.277	ENSCLAG00000008995	SBNO1	100	98.399	Chinchilla_lanigera
ENSPTRG00000005597	SBNO1	85	99.568	ENSCSAG00000002064	SBNO1	100	99.568	Chlorocebus_sabaeus
ENSPTRG00000005597	SBNO1	96	94.519	ENSCHOG00000008814	SBNO1	96	94.519	Choloepus_hoffmanni
ENSPTRG00000005597	SBNO1	99	94.982	ENSCPBG00000025968	SBNO1	99	92.047	Chrysemys_picta_bellii
ENSPTRG00000005597	SBNO1	100	94.122	ENSCANG00000042688	-	100	94.122	Colobus_angolensis_palliatus
ENSPTRG00000005597	SBNO1	100	97.795	ENSCGRG00001017470	Sbno1	100	97.795	Cricetulus_griseus_chok1gshd
ENSPTRG00000005597	SBNO1	100	97.795	ENSCGRG00000004756	Sbno1	100	97.795	Cricetulus_griseus_crigri
ENSPTRG00000005597	SBNO1	99	83.183	ENSCSEG00000011919	sbno1	95	83.183	Cynoglossus_semilaevis
ENSPTRG00000005597	SBNO1	99	83.303	ENSCVAG00000007038	sbno1	95	83.303	Cyprinodon_variegatus
ENSPTRG00000005597	SBNO1	99	86.618	ENSDARG00000099080	sbno1	95	86.618	Danio_rerio
ENSPTRG00000005597	SBNO1	100	96.970	ENSDNOG00000017147	SBNO1	98	97.842	Dasypus_novemcinctus
ENSPTRG00000005597	SBNO1	100	84.384	ENSDORG00000015261	Sbno1	100	84.384	Dipodomys_ordii
ENSPTRG00000005597	SBNO1	92	100.000	ENSETEG00000005620	SBNO1	93	90.596	Echinops_telfairi
ENSPTRG00000005597	SBNO1	72	84.729	ENSEBUG00000013823	sbno1	85	84.729	Eptatretus_burgeri
ENSPTRG00000005597	SBNO1	54	96.199	ENSEASG00005012595	-	92	98.516	Equus_asinus_asinus
ENSPTRG00000005597	SBNO1	100	98.492	ENSECAG00000006127	SBNO1	100	98.492	Equus_caballus
ENSPTRG00000005597	SBNO1	84	98.352	ENSEEUG00000003793	SBNO1	83	98.352	Erinaceus_europaeus
ENSPTRG00000005597	SBNO1	99	86.847	ENSELUG00000002886	sbno1	95	86.847	Esox_lucius
ENSPTRG00000005597	SBNO1	99	98.491	ENSFCAG00000015331	SBNO1	99	98.491	Felis_catus
ENSPTRG00000005597	SBNO1	99	95.479	ENSFALG00000009273	SBNO1	100	92.037	Ficedula_albicollis
ENSPTRG00000005597	SBNO1	99	95.474	ENSFDAG00000014232	SBNO1	99	95.474	Fukomys_damarensis
ENSPTRG00000005597	SBNO1	99	83.483	ENSFHEG00000007360	sbno1	95	83.483	Fundulus_heteroclitus
ENSPTRG00000005597	SBNO1	96	84.587	ENSGMOG00000018229	sbno1	94	84.587	Gadus_morhua
ENSPTRG00000005597	SBNO1	87	96.954	ENSGALG00000003392	SBNO1	99	92.127	Gallus_gallus
ENSPTRG00000005597	SBNO1	99	83.662	ENSGAFG00000003960	sbno1	95	83.662	Gambusia_affinis
ENSPTRG00000005597	SBNO1	96	84.489	ENSGACG00000015633	sbno1	94	84.489	Gasterosteus_aculeatus
ENSPTRG00000005597	SBNO1	99	95.161	ENSGAGG00000001065	SBNO1	100	91.379	Gopherus_agassizii
ENSPTRG00000005597	SBNO1	100	99.853	ENSGGOG00000015000	SBNO1	100	99.853	Gorilla_gorilla
ENSPTRG00000005597	SBNO1	99	70.300	ENSHBUG00000011910	sbno1	99	70.481	Haplochromis_burtoni
ENSPTRG00000005597	SBNO1	99	99.277	ENSHGLG00000014165	-	99	99.277	Heterocephalus_glaber_female
ENSPTRG00000005597	SBNO1	93	84.980	ENSHCOG00000003246	sbno1	95	84.980	Hippocampus_comes
ENSPTRG00000005597	SBNO1	99	85.971	ENSIPUG00000015830	Sbno1	93	89.247	Ictalurus_punctatus
ENSPTRG00000005597	SBNO1	100	98.504	ENSSTOG00000023221	SBNO1	100	98.504	Ictidomys_tridecemlineatus
ENSPTRG00000005597	SBNO1	100	97.487	ENSJJAG00000001741	Sbno1	100	97.487	Jaculus_jaculus
ENSPTRG00000005597	SBNO1	99	84.364	ENSKMAG00000009696	sbno1	95	84.364	Kryptolebias_marmoratus
ENSPTRG00000005597	SBNO1	99	85.714	ENSLBEG00000007623	sbno1	95	85.714	Labrus_bergylta
ENSPTRG00000005597	SBNO1	99	80.857	ENSLACG00000017227	SBNO1	99	90.885	Latimeria_chalumnae
ENSPTRG00000005597	SBNO1	99	88.669	ENSLOCG00000005725	sbno1	95	88.669	Lepisosteus_oculatus
ENSPTRG00000005597	SBNO1	100	97.865	ENSLAFG00000002135	SBNO1	100	97.057	Loxodonta_africana
ENSPTRG00000005597	SBNO1	100	99.497	ENSMFAG00000031429	SBNO1	100	99.497	Macaca_fascicularis
ENSPTRG00000005597	SBNO1	100	99.497	ENSMMUG00000011496	SBNO1	100	99.497	Macaca_mulatta
ENSPTRG00000005597	SBNO1	99	100.000	ENSMLEG00000033260	SBNO1	99	100.000	Mandrillus_leucophaeus
ENSPTRG00000005597	SBNO1	99	84.991	ENSMAMG00000005473	sbno1	95	84.991	Mastacembelus_armatus
ENSPTRG00000005597	SBNO1	99	95.660	ENSMGAG00000003274	SBNO1	100	92.109	Meleagris_gallopavo
ENSPTRG00000005597	SBNO1	52	97.428	ENSMAUG00000004834	-	100	96.983	Mesocricetus_auratus
ENSPTRG00000005597	SBNO1	100	97.200	ENSMICG00000006573	-	100	97.200	Microcebus_murinus
ENSPTRG00000005597	SBNO1	100	97.795	ENSMOCG00000009390	Sbno1	100	97.795	Microtus_ochrogaster
ENSPTRG00000005597	SBNO1	99	83.571	ENSMMOG00000008691	sbno1	94	83.571	Mola_mola
ENSPTRG00000005597	SBNO1	99	97.464	ENSMODG00000012470	SBNO1	98	94.684	Monodelphis_domestica
ENSPTRG00000005597	SBNO1	99	83.303	ENSMALG00000001056	sbno1	99	75.245	Monopterus_albus
ENSPTRG00000005597	SBNO1	99	99.457	MGP_CAROLIEiJ_G0027749	Sbno1	100	97.285	Mus_caroli
ENSPTRG00000005597	SBNO1	99	97.629	ENSMUSG00000038095	Sbno1	100	97.285	Mus_musculus
ENSPTRG00000005597	SBNO1	99	97.486	MGP_PahariEiJ_G0024329	Sbno1	100	96.983	Mus_pahari
ENSPTRG00000005597	SBNO1	99	99.457	MGP_SPRETEiJ_G0028747	Sbno1	100	97.285	Mus_spretus
ENSPTRG00000005597	SBNO1	100	98.349	ENSMPUG00000001658	SBNO1	100	98.349	Mustela_putorius_furo
ENSPTRG00000005597	SBNO1	100	97.846	ENSMLUG00000017159	SBNO1	100	97.846	Myotis_lucifugus
ENSPTRG00000005597	SBNO1	100	98.062	ENSNGAG00000012620	Sbno1	100	98.062	Nannospalax_galili
ENSPTRG00000005597	SBNO1	99	76.138	ENSNBRG00000019189	sbno1	99	76.298	Neolamprologus_brichardi
ENSPTRG00000005597	SBNO1	100	95.726	ENSNLEG00000001502	SBNO1	100	96.594	Nomascus_leucogenys
ENSPTRG00000005597	SBNO1	60	96.774	ENSMEUG00000008768	-	93	89.873	Notamacropus_eugenii
ENSPTRG00000005597	SBNO1	99	97.473	ENSOPRG00000011054	SBNO1	100	94.122	Ochotona_princeps
ENSPTRG00000005597	SBNO1	99	99.277	ENSODEG00000009997	SBNO1	100	98.399	Octodon_degus
ENSPTRG00000005597	SBNO1	99	83.394	ENSONIG00000015348	sbno1	95	83.394	Oreochromis_niloticus
ENSPTRG00000005597	SBNO1	98	96.280	ENSOCUG00000002441	SBNO1	95	96.280	Oryctolagus_cuniculus
ENSPTRG00000005597	SBNO1	99	82.821	ENSORLG00000001593	sbno1	95	82.821	Oryzias_latipes
ENSPTRG00000005597	SBNO1	99	82.821	ENSORLG00020015216	sbno1	95	82.821	Oryzias_latipes_hni
ENSPTRG00000005597	SBNO1	99	83.002	ENSORLG00015002726	sbno1	95	83.002	Oryzias_latipes_hsok
ENSPTRG00000005597	SBNO1	99	83.122	ENSOMEG00000019313	sbno1	99	75.320	Oryzias_melastigma
ENSPTRG00000005597	SBNO1	52	94.402	ENSOGAG00000010781	-	100	94.277	Otolemur_garnettii
ENSPTRG00000005597	SBNO1	99	97.776	ENSOARG00000004404	SBNO1	99	97.776	Ovis_aries
ENSPTRG00000005597	SBNO1	100	99.928	ENSPPAG00000024635	SBNO1	100	99.928	Pan_paniscus
ENSPTRG00000005597	SBNO1	99	98.491	ENSPPRG00000022092	SBNO1	99	98.491	Panthera_pardus
ENSPTRG00000005597	SBNO1	100	98.205	ENSPTIG00000017803	SBNO1	100	98.205	Panthera_tigris_altaica
ENSPTRG00000005597	SBNO1	100	99.606	ENSPANG00000011640	SBNO1	100	99.606	Papio_anubis
ENSPTRG00000005597	SBNO1	99	86.306	ENSPKIG00000001441	sbno1	95	86.306	Paramormyrops_kingsleyae
ENSPTRG00000005597	SBNO1	91	91.441	ENSPSIG00000009256	-	100	87.490	Pelodiscus_sinensis
ENSPTRG00000005597	SBNO1	99	94.784	ENSPSIG00000009572	-	100	91.605	Pelodiscus_sinensis
ENSPTRG00000005597	SBNO1	100	97.559	ENSPEMG00000016087	Sbno1	100	97.559	Peromyscus_maniculatus_bairdii
ENSPTRG00000005597	SBNO1	99	97.101	ENSPCIG00000010985	SBNO1	99	94.404	Phascolarctos_cinereus
ENSPTRG00000005597	SBNO1	99	83.662	ENSPFOG00000005069	sbno1	95	83.662	Poecilia_formosa
ENSPTRG00000005597	SBNO1	99	83.662	ENSPLAG00000015015	sbno1	95	83.662	Poecilia_latipinna
ENSPTRG00000005597	SBNO1	99	83.662	ENSPMEG00000021212	sbno1	95	83.662	Poecilia_mexicana
ENSPTRG00000005597	SBNO1	99	83.303	ENSPREG00000017746	sbno1	95	83.303	Poecilia_reticulata
ENSPTRG00000005597	SBNO1	100	99.282	ENSPPYG00000005084	SBNO1	100	99.282	Pongo_abelii
ENSPTRG00000005597	SBNO1	89	92.329	ENSPCAG00000008634	SBNO1	88	92.297	Procavia_capensis
ENSPTRG00000005597	SBNO1	100	98.399	ENSPCOG00000024277	SBNO1	100	98.305	Propithecus_coquereli
ENSPTRG00000005597	SBNO1	92	99.008	ENSPVAG00000015304	SBNO1	87	99.008	Pteropus_vampyrus
ENSPTRG00000005597	SBNO1	99	83.394	ENSPNYG00000004291	sbno1	95	83.394	Pundamilia_nyererei
ENSPTRG00000005597	SBNO1	99	87.590	ENSPNAG00000015622	sbno1	95	87.590	Pygocentrus_nattereri
ENSPTRG00000005597	SBNO1	99	98.109	ENSRNOG00000001064	Sbno1	99	99.457	Rattus_norvegicus
ENSPTRG00000005597	SBNO1	100	99.685	ENSRROG00000034230	SBNO1	100	99.685	Rhinopithecus_roxellana
ENSPTRG00000005597	SBNO1	97	93.127	ENSSBOG00000015422	SBNO1	100	93.676	Saimiri_boliviensis_boliviensis
ENSPTRG00000005597	SBNO1	99	86.306	ENSSFOG00015019025	sbno1	95	86.306	Scleropages_formosus
ENSPTRG00000005597	SBNO1	99	83.544	ENSSMAG00000013640	sbno1	95	83.544	Scophthalmus_maximus
ENSPTRG00000005597	SBNO1	99	84.629	ENSSDUG00000023480	sbno1	95	84.629	Seriola_dumerili
ENSPTRG00000005597	SBNO1	99	84.629	ENSSLDG00000007928	sbno1	95	84.629	Seriola_lalandi_dorsalis
ENSPTRG00000005597	SBNO1	91	98.043	ENSSARG00000002594	SBNO1	89	98.544	Sorex_araneus
ENSPTRG00000005597	SBNO1	99	94.043	ENSSPUG00000012640	SBNO1	100	91.311	Sphenodon_punctatus
ENSPTRG00000005597	SBNO1	99	82.796	ENSSPAG00000016244	sbno1	95	82.796	Stegastes_partitus
ENSPTRG00000005597	SBNO1	100	98.577	ENSSSCG00000009776	SBNO1	100	98.306	Sus_scrofa
ENSPTRG00000005597	SBNO1	99	95.660	ENSTGUG00000005380	SBNO1	100	91.966	Taeniopygia_guttata
ENSPTRG00000005597	SBNO1	99	84.448	ENSTRUG00000018490	sbno1	95	84.448	Takifugu_rubripes
ENSPTRG00000005597	SBNO1	56	70.654	ENSTNIG00000013506	sbno1	99	71.252	Tetraodon_nigroviridis
ENSPTRG00000005597	SBNO1	100	98.349	ENSUAMG00000019671	SBNO1	100	98.349	Ursus_americanus
ENSPTRG00000005597	SBNO1	100	98.349	ENSUMAG00000004002	SBNO1	100	98.349	Ursus_maritimus
ENSPTRG00000005597	SBNO1	95	93.478	ENSVPAG00000007024	SBNO1	95	93.478	Vicugna_pacos
ENSPTRG00000005597	SBNO1	100	98.205	ENSVVUG00000027807	SBNO1	100	98.205	Vulpes_vulpes
ENSPTRG00000005597	SBNO1	99	92.599	ENSXETG00000031930	SBNO1	95	92.599	Xenopus_tropicalis
ENSPTRG00000005597	SBNO1	86	85.827	ENSXCOG00000011607	sbno1	90	85.602	Xiphophorus_couchianus
ENSPTRG00000005597	SBNO1	99	83.303	ENSXMAG00000002140	sbno1	95	83.303	Xiphophorus_maculatus