EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000005677 (Gene tree)
Gene ID: 452452
Gene Symbol: PSPC1
Alias: -
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 118448 bases
Position: chr13:4183349-4301796
Accession: 5098
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000061585	RRM_1	PF00076.22	1.5e-32	1	2
ENSPTRP00000061585	RRM_1	PF00076.22	1.5e-32	2	2
ENSPTRP00000084505	RRM_1	PF00076.22	1.9e-32	1	2
ENSPTRP00000084505	RRM_1	PF00076.22	1.9e-32	2	2
ENSPTRP00000084129	RRM_1	PF00076.22	3.8e-32	1	2
ENSPTRP00000084129	RRM_1	PF00076.22	3.8e-32	2	2
ENSPTRP00000071044	RRM_1	PF00076.22	3.9e-32	1	2
ENSPTRP00000071044	RRM_1	PF00076.22	3.9e-32	2	2
ENSPTRP00000009686	RRM_1	PF00076.22	4.3e-32	1	2
ENSPTRP00000009686	RRM_1	PF00076.22	4.3e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000081752	-	1068	-	ENSPTRP00000061585	355 (aa)	-	A0A2I3RAE0
ENSPTRT00000088648	-	2121	XM_016925004	ENSPTRP00000071044	491 (aa)	XP_016780495	A0A2I3S387
ENSPTRT00000010468	-	1527	-	ENSPTRP00000009686	508 (aa)	-	H2Q790
ENSPTRT00000080792	-	1437	-	ENSPTRP00000084129	478 (aa)	-	A0A2I3T4H6
ENSPTRT00000086210	-	5021	XM_009426678	ENSPTRP00000084505	393 (aa)	XP_009424953	G2HFL9

Gene Model

Click here to download ENSPTRG00000005677's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000005677's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000005677	PSPC1	80	67.296	ENSPTRG00000000518	SFPQ	52	62.295
ENSPTRG00000005677	PSPC1	77	72.093	ENSPTRG00000022010	NONO	87	72.549
ENSPTRG00000005677	PSPC1	73	67.176	ENSPTRG00000051228	-	76	63.128

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000005677	PSPC1	100	100.000	ENSG00000121390	PSPC1	100	100.000	Homo_sapiens
ENSPTRG00000005677	PSPC1	82	81.173	ENSAPOG00000015946	pspc1	76	75.669	Acanthochromis_polyacanthus
ENSPTRG00000005677	PSPC1	99	98.560	ENSAMEG00000017420	PSPC1	98	97.082	Ailuropoda_melanoleuca
ENSPTRG00000005677	PSPC1	98	64.122	ENSACIG00000018695	pspc1	77	66.667	Amphilophus_citrinellus
ENSPTRG00000005677	PSPC1	82	80.556	ENSAOCG00000005279	pspc1	76	75.182	Amphiprion_ocellaris
ENSPTRG00000005677	PSPC1	82	80.556	ENSAPEG00000015927	pspc1	76	75.182	Amphiprion_percula
ENSPTRG00000005677	PSPC1	74	78.161	ENSATEG00000004878	pspc1	76	64.500	Anabas_testudineus
ENSPTRG00000005677	PSPC1	80	75.786	ENSAPLG00000003643	SFPQ	69	69.126	Anas_platyrhynchos
ENSPTRG00000005677	PSPC1	75	94.278	ENSAPLG00000006246	PSPC1	91	94.278	Anas_platyrhynchos
ENSPTRG00000005677	PSPC1	98	83.865	ENSACAG00000002093	PSPC1	81	93.240	Anolis_carolinensis
ENSPTRG00000005677	PSPC1	74	71.863	ENSACAG00000013307	-	56	64.917	Anolis_carolinensis
ENSPTRG00000005677	PSPC1	99	98.971	ENSANAG00000000059	PSPC1	98	97.276	Aotus_nancymaae
ENSPTRG00000005677	PSPC1	99	62.935	ENSACLG00000027220	pspc1	77	62.935	Astatotilapia_calliptera
ENSPTRG00000005677	PSPC1	82	79.573	ENSAMXG00000036881	pspc1	81	72.540	Astyanax_mexicanus
ENSPTRG00000005677	PSPC1	99	95.679	ENSBTAG00000003934	PSPC1	93	95.679	Bos_taurus
ENSPTRG00000005677	PSPC1	99	98.971	ENSCJAG00000004554	PSPC1	98	97.276	Callithrix_jacchus
ENSPTRG00000005677	PSPC1	100	97.964	ENSCAFG00020002009	PSPC1	100	97.964	Canis_lupus_dingo
ENSPTRG00000005677	PSPC1	99	95.679	ENSCHIG00000016708	PSPC1	93	95.679	Capra_hircus
ENSPTRG00000005677	PSPC1	78	87.970	ENSTSYG00000032882	PSPC1	91	87.970	Carlito_syrichta
ENSPTRG00000005677	PSPC1	100	97.201	ENSCPOG00000000395	PSPC1	100	97.201	Cavia_porcellus
ENSPTRG00000005677	PSPC1	99	98.765	ENSCCAG00000033498	PSPC1	98	97.276	Cebus_capucinus
ENSPTRG00000005677	PSPC1	99	99.177	ENSCATG00000036434	PSPC1	99	99.134	Cercocebus_atys
ENSPTRG00000005677	PSPC1	88	86.123	ENSCLAG00000005241	PSPC1	98	86.123	Chinchilla_lanigera
ENSPTRG00000005677	PSPC1	98	96.891	ENSCHOG00000008913	PSPC1	93	90.741	Choloepus_hoffmanni
ENSPTRG00000005677	PSPC1	98	86.708	ENSCPBG00000020859	PSPC1	82	94.651	Chrysemys_picta_bellii
ENSPTRG00000005677	PSPC1	78	58.766	ENSCSAVG00000003533	-	53	61.786	Ciona_savignyi
ENSPTRG00000005677	PSPC1	67	99.245	ENSCANG00000018948	PSPC1	88	99.245	Colobus_angolensis_palliatus
ENSPTRG00000005677	PSPC1	99	97.119	ENSCGRG00001018368	Pspc1	98	95.720	Cricetulus_griseus_chok1gshd
ENSPTRG00000005677	PSPC1	99	97.119	ENSCGRG00000011724	Pspc1	98	95.720	Cricetulus_griseus_crigri
ENSPTRG00000005677	PSPC1	81	78.616	ENSCVAG00000007679	-	76	69.975	Cyprinodon_variegatus
ENSPTRG00000005677	PSPC1	98	71.948	ENSDARG00000006621	pspc1	88	71.858	Danio_rerio
ENSPTRG00000005677	PSPC1	99	96.914	ENSDNOG00000011078	PSPC1	98	95.331	Dasypus_novemcinctus
ENSPTRG00000005677	PSPC1	99	94.444	ENSDORG00000016050	Pspc1	93	94.444	Dipodomys_ordii
ENSPTRG00000005677	PSPC1	51	100.000	ENSETEG00000000502	-	62	100.000	Echinops_telfairi
ENSPTRG00000005677	PSPC1	84	45.963	ENSEBUG00000010133	pspc1	76	48.973	Eptatretus_burgeri
ENSPTRG00000005677	PSPC1	82	73.313	ENSEBUG00000003964	-	62	72.254	Eptatretus_burgeri
ENSPTRG00000005677	PSPC1	100	97.201	ENSEASG00005000119	PSPC1	100	97.201	Equus_asinus_asinus
ENSPTRG00000005677	PSPC1	100	97.201	ENSECAG00000017286	PSPC1	100	97.201	Equus_caballus
ENSPTRG00000005677	PSPC1	87	91.667	ENSEEUG00000011288	-	83	81.505	Erinaceus_europaeus
ENSPTRG00000005677	PSPC1	99	71.859	ENSELUG00000003746	pspc1	79	80.838	Esox_lucius
ENSPTRG00000005677	PSPC1	99	98.765	ENSFCAG00000027841	PSPC1	100	97.710	Felis_catus
ENSPTRG00000005677	PSPC1	87	95.116	ENSFALG00000008750	PSPC1	92	87.860	Ficedula_albicollis
ENSPTRG00000005677	PSPC1	99	94.650	ENSFDAG00000002617	PSPC1	93	94.650	Fukomys_damarensis
ENSPTRG00000005677	PSPC1	76	80.220	ENSGMOG00000015074	pspc1	80	69.087	Gadus_morhua
ENSPTRG00000005677	PSPC1	98	87.169	ENSGALG00000017142	PSPC1	82	95.116	Gallus_gallus
ENSPTRG00000005677	PSPC1	82	78.154	ENSGAFG00000006327	pspc1	67	78.154	Gambusia_affinis
ENSPTRG00000005677	PSPC1	84	73.414	ENSGACG00000014901	pspc1	93	73.433	Gasterosteus_aculeatus
ENSPTRG00000005677	PSPC1	84	72.892	ENSGAGG00000017325	-	56	68.306	Gopherus_agassizii
ENSPTRG00000005677	PSPC1	98	86.708	ENSGAGG00000019164	PSPC1	82	94.651	Gopherus_agassizii
ENSPTRG00000005677	PSPC1	100	100.000	ENSGGOG00000003414	PSPC1	100	100.000	Gorilla_gorilla
ENSPTRG00000005677	PSPC1	98	69.347	ENSHBUG00000001139	pspc1	77	73.850	Haplochromis_burtoni
ENSPTRG00000005677	PSPC1	99	97.119	ENSHGLG00000018811	PSPC1	98	95.525	Heterocephalus_glaber_female
ENSPTRG00000005677	PSPC1	91	91.049	ENSHGLG00100007962	PSPC1	100	92.286	Heterocephalus_glaber_male
ENSPTRG00000005677	PSPC1	82	74.154	ENSHCOG00000013251	pspc1	83	71.658	Hippocampus_comes
ENSPTRG00000005677	PSPC1	98	73.643	ENSIPUG00000013192	pspc1	79	77.488	Ictalurus_punctatus
ENSPTRG00000005677	PSPC1	100	97.710	ENSSTOG00000026833	PSPC1	100	97.710	Ictidomys_tridecemlineatus
ENSPTRG00000005677	PSPC1	99	97.531	ENSJJAG00000018334	Pspc1	98	95.914	Jaculus_jaculus
ENSPTRG00000005677	PSPC1	74	69.204	ENSKMAG00000013525	-	66	69.097	Kryptolebias_marmoratus
ENSPTRG00000005677	PSPC1	94	72.826	ENSLBEG00000004474	pspc1	71	76.855	Labrus_bergylta
ENSPTRG00000005677	PSPC1	99	75.746	ENSLACG00000010762	PSPC1	81	85.714	Latimeria_chalumnae
ENSPTRG00000005677	PSPC1	86	84.906	ENSLOCG00000010832	pspc1	83	85.238	Lepisosteus_oculatus
ENSPTRG00000005677	PSPC1	99	97.119	ENSLAFG00000010968	PSPC1	93	97.119	Loxodonta_africana
ENSPTRG00000005677	PSPC1	99	99.177	ENSMFAG00000032728	PSPC1	99	99.134	Macaca_fascicularis
ENSPTRG00000005677	PSPC1	99	99.177	ENSMMUG00000020262	PSPC1	99	99.134	Macaca_mulatta
ENSPTRG00000005677	PSPC1	99	99.177	ENSMNEG00000027401	PSPC1	99	99.134	Macaca_nemestrina
ENSPTRG00000005677	PSPC1	99	99.724	ENSMLEG00000039043	PSPC1	98	97.692	Mandrillus_leucophaeus
ENSPTRG00000005677	PSPC1	82	78.086	ENSMAMG00000004333	pspc1	75	73.479	Mastacembelus_armatus
ENSPTRG00000005677	PSPC1	99	62.935	ENSMZEG00005005726	pspc1	77	62.935	Maylandia_zebra
ENSPTRG00000005677	PSPC1	75	94.038	ENSMGAG00000015134	PSPC1	91	94.038	Meleagris_gallopavo
ENSPTRG00000005677	PSPC1	98	90.674	ENSMAUG00000021067	Pspc1	99	92.239	Mesocricetus_auratus
ENSPTRG00000005677	PSPC1	100	98.219	ENSMICG00000013970	PSPC1	100	98.219	Microcebus_murinus
ENSPTRG00000005677	PSPC1	99	97.119	ENSMOCG00000006060	Pspc1	98	95.720	Microtus_ochrogaster
ENSPTRG00000005677	PSPC1	89	53.782	ENSMMOG00000004352	pspc1	58	54.487	Mola_mola
ENSPTRG00000005677	PSPC1	99	96.495	ENSMODG00000008029	PSPC1	78	96.901	Monodelphis_domestica
ENSPTRG00000005677	PSPC1	82	77.469	ENSMALG00000008914	pspc1	83	69.336	Monopterus_albus
ENSPTRG00000005677	PSPC1	99	97.331	MGP_CAROLIEiJ_G0019341	Pspc1	99	97.408	Mus_caroli
ENSPTRG00000005677	PSPC1	99	97.331	ENSMUSG00000021938	Pspc1	99	97.408	Mus_musculus
ENSPTRG00000005677	PSPC1	99	97.331	MGP_PahariEiJ_G0030359	Pspc1	99	97.408	Mus_pahari
ENSPTRG00000005677	PSPC1	99	97.125	MGP_SPRETEiJ_G0020232	Pspc1	99	97.192	Mus_spretus
ENSPTRG00000005677	PSPC1	99	98.354	ENSMPUG00000013347	PSPC1	98	96.887	Mustela_putorius_furo
ENSPTRG00000005677	PSPC1	99	96.524	ENSMLUG00000017663	PSPC1	98	94.971	Myotis_lucifugus
ENSPTRG00000005677	PSPC1	99	97.531	ENSNGAG00000011271	Pspc1	98	95.720	Nannospalax_galili
ENSPTRG00000005677	PSPC1	98	64.070	ENSNBRG00000014059	pspc1	92	61.675	Neolamprologus_brichardi
ENSPTRG00000005677	PSPC1	99	99.383	ENSNLEG00000001294	PSPC1	98	97.860	Nomascus_leucogenys
ENSPTRG00000005677	PSPC1	82	95.703	ENSMEUG00000000476	PSPC1	78	95.703	Notamacropus_eugenii
ENSPTRG00000005677	PSPC1	99	85.597	ENSODEG00000007817	-	92	80.922	Octodon_degus
ENSPTRG00000005677	PSPC1	98	88.601	ENSODEG00000019012	-	88	90.693	Octodon_degus
ENSPTRG00000005677	PSPC1	98	69.598	ENSONIG00000012010	pspc1	80	71.991	Oreochromis_niloticus
ENSPTRG00000005677	PSPC1	99	66.324	ENSOANG00000011381	-	92	65.708	Ornithorhynchus_anatinus
ENSPTRG00000005677	PSPC1	74	98.066	ENSOANG00000009017	-	98	95.897	Ornithorhynchus_anatinus
ENSPTRG00000005677	PSPC1	99	98.354	ENSOCUG00000006153	PSPC1	98	96.693	Oryctolagus_cuniculus
ENSPTRG00000005677	PSPC1	82	79.012	ENSORLG00000004232	-	82	68.192	Oryzias_latipes
ENSPTRG00000005677	PSPC1	82	78.395	ENSORLG00020000578	PSPC1	82	68.421	Oryzias_latipes_hni
ENSPTRG00000005677	PSPC1	82	79.321	ENSORLG00015017480	pspc1	82	68.493	Oryzias_latipes_hsok
ENSPTRG00000005677	PSPC1	53	82.857	ENSOMEG00000003779	pspc1	96	82.775	Oryzias_melastigma
ENSPTRG00000005677	PSPC1	99	98.971	ENSOGAG00000012643	PSPC1	98	97.471	Otolemur_garnettii
ENSPTRG00000005677	PSPC1	99	90.574	ENSOARG00000014163	PSPC1	98	89.341	Ovis_aries
ENSPTRG00000005677	PSPC1	88	97.653	ENSPPAG00000009836	PSPC1	96	97.653	Pan_paniscus
ENSPTRG00000005677	PSPC1	99	98.765	ENSPPRG00000008833	PSPC1	98	97.276	Panthera_pardus
ENSPTRG00000005677	PSPC1	100	81.712	ENSPTIG00000016917	PSPC1	98	81.712	Panthera_tigris_altaica
ENSPTRG00000005677	PSPC1	99	99.383	ENSPANG00000001992	PSPC1	99	99.351	Papio_anubis
ENSPTRG00000005677	PSPC1	83	83.841	ENSPKIG00000003578	pspc1	80	78.322	Paramormyrops_kingsleyae
ENSPTRG00000005677	PSPC1	98	86.869	ENSPSIG00000005168	PSPC1	92	86.437	Pelodiscus_sinensis
ENSPTRG00000005677	PSPC1	78	70.476	ENSPMGG00000015135	pspc1	80	73.611	Periophthalmus_magnuspinnatus
ENSPTRG00000005677	PSPC1	99	97.531	ENSPEMG00000015214	Pspc1	98	96.109	Peromyscus_maniculatus_bairdii
ENSPTRG00000005677	PSPC1	77	45.070	ENSPMAG00000004618	pspc1	79	47.692	Petromyzon_marinus
ENSPTRG00000005677	PSPC1	99	96.907	ENSPCIG00000017680	PSPC1	98	95.517	Phascolarctos_cinereus
ENSPTRG00000005677	PSPC1	92	71.925	ENSPFOG00000003362	pspc1	84	69.526	Poecilia_formosa
ENSPTRG00000005677	PSPC1	80	66.901	ENSPLAG00000004407	-	52	60.647	Poecilia_latipinna
ENSPTRG00000005677	PSPC1	97	69.018	ENSPLAG00000011540	pspc1	83	69.615	Poecilia_latipinna
ENSPTRG00000005677	PSPC1	97	68.514	ENSPMEG00000008322	pspc1	83	69.161	Poecilia_mexicana
ENSPTRG00000005677	PSPC1	79	67.742	ENSPMEG00000001025	-	51	60.647	Poecilia_mexicana
ENSPTRG00000005677	PSPC1	92	71.123	ENSPREG00000007786	pspc1	83	68.934	Poecilia_reticulata
ENSPTRG00000005677	PSPC1	99	99.177	ENSPPYG00000005186	PSPC1	97	99.567	Pongo_abelii
ENSPTRG00000005677	PSPC1	73	100.000	ENSPCAG00000008314	-	61	100.000	Procavia_capensis
ENSPTRG00000005677	PSPC1	98	98.964	ENSPCOG00000014364	PSPC1	98	92.802	Propithecus_coquereli
ENSPTRG00000005677	PSPC1	98	97.150	ENSPVAG00000005036	PSPC1	93	95.062	Pteropus_vampyrus
ENSPTRG00000005677	PSPC1	99	62.935	ENSPNYG00000008893	pspc1	80	61.055	Pundamilia_nyererei
ENSPTRG00000005677	PSPC1	98	72.237	ENSPNAG00000016511	pspc1	85	73.284	Pygocentrus_nattereri
ENSPTRG00000005677	PSPC1	99	97.531	ENSRNOG00000020782	Pspc1	99	97.619	Rattus_norvegicus
ENSPTRG00000005677	PSPC1	92	99.556	ENSRBIG00000036057	PSPC1	100	99.160	Rhinopithecus_bieti
ENSPTRG00000005677	PSPC1	100	98.982	ENSRROG00000036334	PSPC1	100	98.982	Rhinopithecus_roxellana
ENSPTRG00000005677	PSPC1	77	93.583	ENSSBOG00000028172	PSPC1	89	97.417	Saimiri_boliviensis_boliviensis
ENSPTRG00000005677	PSPC1	99	91.189	ENSSHAG00000004696	PSPC1	98	90.116	Sarcophilus_harrisii
ENSPTRG00000005677	PSPC1	83	85.583	ENSSFOG00015001395	pspc1	89	78.689	Scleropages_formosus
ENSPTRG00000005677	PSPC1	87	75.072	ENSSMAG00000001761	pspc1	82	76.970	Scophthalmus_maximus
ENSPTRG00000005677	PSPC1	82	81.173	ENSSDUG00000010651	pspc1	76	74.074	Seriola_dumerili
ENSPTRG00000005677	PSPC1	82	74.303	ENSSLDG00000004284	pspc1	82	61.839	Seriola_lalandi_dorsalis
ENSPTRG00000005677	PSPC1	99	88.889	ENSSARG00000000888	PSPC1	93	88.889	Sorex_araneus
ENSPTRG00000005677	PSPC1	81	66.044	ENSSPUG00000001136	-	53	61.453	Sphenodon_punctatus
ENSPTRG00000005677	PSPC1	90	83.841	ENSSPUG00000008550	PSPC1	81	83.894	Sphenodon_punctatus
ENSPTRG00000005677	PSPC1	82	80.864	ENSSPAG00000001921	pspc1	75	75.182	Stegastes_partitus
ENSPTRG00000005677	PSPC1	99	96.920	ENSSSCG00000009569	PSPC1	99	96.382	Sus_scrofa
ENSPTRG00000005677	PSPC1	87	95.116	ENSTGUG00000011295	PSPC1	92	95.116	Taeniopygia_guttata
ENSPTRG00000005677	PSPC1	92	65.668	ENSTRUG00000011335	pspc1	77	65.937	Takifugu_rubripes
ENSPTRG00000005677	PSPC1	82	73.148	ENSTNIG00000010358	pspc1	84	66.508	Tetraodon_nigroviridis
ENSPTRG00000005677	PSPC1	98	87.306	ENSTBEG00000002361	PSPC1	95	76.986	Tupaia_belangeri
ENSPTRG00000005677	PSPC1	99	96.920	ENSTTRG00000003343	PSPC1	98	95.136	Tursiops_truncatus
ENSPTRG00000005677	PSPC1	93	96.119	ENSUAMG00000012309	PSPC1	100	98.575	Ursus_americanus
ENSPTRG00000005677	PSPC1	92	98.889	ENSUMAG00000013993	PSPC1	100	98.039	Ursus_maritimus
ENSPTRG00000005677	PSPC1	74	100.000	ENSVPAG00000010029	PSPC1	98	97.436	Vicugna_pacos
ENSPTRG00000005677	PSPC1	100	97.964	ENSVVUG00000006414	PSPC1	100	98.964	Vulpes_vulpes
ENSPTRG00000005677	PSPC1	92	71.429	ENSXCOG00000017438	pspc1	77	76.994	Xiphophorus_couchianus
ENSPTRG00000005677	PSPC1	92	71.698	ENSXMAG00000007929	pspc1	77	77.301	Xiphophorus_maculatus