EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000006025 (Gene tree)
Gene ID: 452653
Gene Symbol: LIG4
Alias: -
Full Name: DNA ligase 4
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 2736 bases
Position: chr13:93989038-93991773
Accession: 10471
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000042757	RNA_ligase	PF09414.10	4.1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000048245	-	2736	XM_016925525	ENSPTRP00000042757	911 (aa)	XP_016781014	H2R1R7

Gene Model

Click here to download ENSPTRG00000006025's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03450	Non-homologous end-joining	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000006025's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000006025	LIG4	100	99.451	ENSG00000174405	LIG4	100	99.451	Homo_sapiens
ENSPTRG00000006025	LIG4	99	65.824	ENSAPOG00000000866	lig4	99	66.044	Acanthochromis_polyacanthus
ENSPTRG00000006025	LIG4	100	89.023	ENSAMEG00000019685	LIG4	99	89.023	Ailuropoda_melanoleuca
ENSPTRG00000006025	LIG4	99	66.667	ENSACIG00000018309	lig4	99	66.887	Amphilophus_citrinellus
ENSPTRG00000006025	LIG4	99	65.824	ENSAOCG00000011768	lig4	99	66.044	Amphiprion_ocellaris
ENSPTRG00000006025	LIG4	99	65.934	ENSAPEG00000017815	lig4	99	66.154	Amphiprion_percula
ENSPTRG00000006025	LIG4	99	65.969	ENSATEG00000005583	lig4	99	66.079	Anabas_testudineus
ENSPTRG00000006025	LIG4	97	75.682	ENSAPLG00000001673	LIG4	99	75.682	Anas_platyrhynchos
ENSPTRG00000006025	LIG4	99	76.633	ENSACAG00000014566	LIG4	99	76.633	Anolis_carolinensis
ENSPTRG00000006025	LIG4	100	95.609	ENSANAG00000012446	LIG4	100	95.609	Aotus_nancymaae
ENSPTRG00000006025	LIG4	99	65.897	ENSACLG00000027051	lig4	99	65.897	Astatotilapia_calliptera
ENSPTRG00000006025	LIG4	99	64.661	ENSAMXG00000008192	lig4	94	64.661	Astyanax_mexicanus
ENSPTRG00000006025	LIG4	100	88.913	ENSBTAG00000015868	LIG4	100	88.913	Bos_taurus
ENSPTRG00000006025	LIG4	100	94.731	ENSCJAG00000014689	LIG4	100	94.731	Callithrix_jacchus
ENSPTRG00000006025	LIG4	100	90.670	ENSCAFG00000006031	LIG4	100	90.670	Canis_familiaris
ENSPTRG00000006025	LIG4	100	90.670	ENSCAFG00020021230	LIG4	100	90.670	Canis_lupus_dingo
ENSPTRG00000006025	LIG4	100	88.694	ENSCHIG00000001019	LIG4	100	88.694	Capra_hircus
ENSPTRG00000006025	LIG4	99	88.261	ENSCAPG00000006284	LIG4	99	88.261	Cavia_aperea
ENSPTRG00000006025	LIG4	100	88.255	ENSCPOG00000014266	LIG4	100	88.255	Cavia_porcellus
ENSPTRG00000006025	LIG4	100	95.170	ENSCCAG00000019971	LIG4	100	95.170	Cebus_capucinus
ENSPTRG00000006025	LIG4	100	96.817	ENSCATG00000021075	LIG4	100	96.817	Cercocebus_atys
ENSPTRG00000006025	LIG4	100	89.352	ENSCLAG00000003376	LIG4	100	89.352	Chinchilla_lanigera
ENSPTRG00000006025	LIG4	100	96.926	ENSCSAG00000000211	LIG4	100	96.926	Chlorocebus_sabaeus
ENSPTRG00000006025	LIG4	99	79.801	ENSCPBG00000023291	LIG4	100	79.194	Chrysemys_picta_bellii
ENSPTRG00000006025	LIG4	68	45.151	ENSCING00000009536	-	95	45.151	Ciona_intestinalis
ENSPTRG00000006025	LIG4	83	45.335	ENSCSAVG00000010336	-	98	45.335	Ciona_savignyi
ENSPTRG00000006025	LIG4	100	96.926	ENSCANG00000005805	LIG4	100	96.926	Colobus_angolensis_palliatus
ENSPTRG00000006025	LIG4	100	86.842	ENSCGRG00001012072	Lig4	100	86.842	Cricetulus_griseus_chok1gshd
ENSPTRG00000006025	LIG4	100	86.842	ENSCGRG00000013417	Lig4	100	86.842	Cricetulus_griseus_crigri
ENSPTRG00000006025	LIG4	97	66.818	ENSCSEG00000013905	lig4	95	66.818	Cynoglossus_semilaevis
ENSPTRG00000006025	LIG4	99	66.445	ENSCVAG00000007896	lig4	99	66.445	Cyprinodon_variegatus
ENSPTRG00000006025	LIG4	99	64.452	ENSDARG00000060620	lig4	98	64.452	Danio_rerio
ENSPTRG00000006025	LIG4	100	90.022	ENSDNOG00000000513	LIG4	100	90.022	Dasypus_novemcinctus
ENSPTRG00000006025	LIG4	100	88.804	ENSDORG00000027303	Lig4	100	88.804	Dipodomys_ordii
ENSPTRG00000006025	LIG4	90	31.111	FBgn0030506	Lig4	91	31.111	Drosophila_melanogaster
ENSPTRG00000006025	LIG4	99	84.590	ENSETEG00000015563	LIG4	100	84.701	Echinops_telfairi
ENSPTRG00000006025	LIG4	99	43.920	ENSEBUG00000014243	lig4	99	43.920	Eptatretus_burgeri
ENSPTRG00000006025	LIG4	100	91.218	ENSEASG00005022073	LIG4	100	91.218	Equus_asinus_asinus
ENSPTRG00000006025	LIG4	100	90.779	ENSECAG00000003257	LIG4	100	90.779	Equus_caballus
ENSPTRG00000006025	LIG4	99	66.814	ENSELUG00000006787	lig4	99	66.924	Esox_lucius
ENSPTRG00000006025	LIG4	100	90.011	ENSFCAG00000031985	LIG4	100	90.011	Felis_catus
ENSPTRG00000006025	LIG4	89	76.261	ENSFALG00000004214	LIG4	98	76.261	Ficedula_albicollis
ENSPTRG00000006025	LIG4	100	89.352	ENSFDAG00000008973	LIG4	100	89.352	Fukomys_damarensis
ENSPTRG00000006025	LIG4	99	65.338	ENSFHEG00000007398	lig4	89	65.338	Fundulus_heteroclitus
ENSPTRG00000006025	LIG4	85	64.056	ENSGMOG00000012843	lig4	99	64.056	Gadus_morhua
ENSPTRG00000006025	LIG4	100	75.546	ENSGALG00000016854	LIG4	100	75.546	Gallus_gallus
ENSPTRG00000006025	LIG4	99	65.590	ENSGAFG00000019779	lig4	95	65.495	Gambusia_affinis
ENSPTRG00000006025	LIG4	99	63.677	ENSGACG00000014135	lig4	99	63.677	Gasterosteus_aculeatus
ENSPTRG00000006025	LIG4	100	99.341	ENSGGOG00000027771	LIG4	100	99.341	Gorilla_gorilla
ENSPTRG00000006025	LIG4	99	65.677	ENSHBUG00000006245	lig4	99	65.677	Haplochromis_burtoni
ENSPTRG00000006025	LIG4	100	89.462	ENSHGLG00000000718	LIG4	100	89.462	Heterocephalus_glaber_female
ENSPTRG00000006025	LIG4	100	89.462	ENSHGLG00100003265	LIG4	100	89.462	Heterocephalus_glaber_male
ENSPTRG00000006025	LIG4	99	64.725	ENSHCOG00000012010	lig4	99	64.725	Hippocampus_comes
ENSPTRG00000006025	LIG4	99	65.093	ENSIPUG00000013748	lig4	99	65.093	Ictalurus_punctatus
ENSPTRG00000006025	LIG4	100	90.340	ENSSTOG00000024303	LIG4	100	90.340	Ictidomys_tridecemlineatus
ENSPTRG00000006025	LIG4	100	87.486	ENSJJAG00000006750	Lig4	100	87.486	Jaculus_jaculus
ENSPTRG00000006025	LIG4	99	65.338	ENSKMAG00000001149	lig4	99	65.338	Kryptolebias_marmoratus
ENSPTRG00000006025	LIG4	91	66.226	ENSLBEG00000014578	lig4	100	66.466	Labrus_bergylta
ENSPTRG00000006025	LIG4	99	72.566	ENSLACG00000003282	LIG4	99	72.566	Latimeria_chalumnae
ENSPTRG00000006025	LIG4	99	70.833	ENSLOCG00000008901	lig4	98	70.833	Lepisosteus_oculatus
ENSPTRG00000006025	LIG4	100	87.952	ENSLAFG00000031152	LIG4	100	87.952	Loxodonta_africana
ENSPTRG00000006025	LIG4	100	97.036	ENSMFAG00000037235	LIG4	100	97.036	Macaca_fascicularis
ENSPTRG00000006025	LIG4	100	97.036	ENSMMUG00000008874	LIG4	100	97.036	Macaca_mulatta
ENSPTRG00000006025	LIG4	100	97.036	ENSMNEG00000023575	LIG4	100	97.036	Macaca_nemestrina
ENSPTRG00000006025	LIG4	100	96.707	ENSMLEG00000026720	LIG4	100	96.707	Mandrillus_leucophaeus
ENSPTRG00000006025	LIG4	99	66.044	ENSMAMG00000008472	lig4	99	66.264	Mastacembelus_armatus
ENSPTRG00000006025	LIG4	99	65.897	ENSMZEG00005001855	lig4	99	65.897	Maylandia_zebra
ENSPTRG00000006025	LIG4	99	76.180	ENSMGAG00000015532	LIG4	99	76.180	Meleagris_gallopavo
ENSPTRG00000006025	LIG4	100	84.632	ENSMOCG00000019000	Lig4	100	84.632	Microtus_ochrogaster
ENSPTRG00000006025	LIG4	99	65.559	ENSMMOG00000004390	lig4	99	65.559	Mola_mola
ENSPTRG00000006025	LIG4	100	84.083	ENSMODG00000025064	LIG4	100	84.539	Monodelphis_domestica
ENSPTRG00000006025	LIG4	99	66.002	ENSMALG00000008555	lig4	99	66.002	Monopterus_albus
ENSPTRG00000006025	LIG4	100	87.157	MGP_CAROLIEiJ_G0030809	Lig4	100	87.157	Mus_caroli
ENSPTRG00000006025	LIG4	100	86.937	ENSMUSG00000049717	Lig4	100	86.937	Mus_musculus
ENSPTRG00000006025	LIG4	100	86.937	MGP_PahariEiJ_G0021270	Lig4	100	86.937	Mus_pahari
ENSPTRG00000006025	LIG4	100	86.937	MGP_SPRETEiJ_G0031917	Lig4	100	86.937	Mus_spretus
ENSPTRG00000006025	LIG4	100	88.694	ENSMPUG00000018675	LIG4	100	88.694	Mustela_putorius_furo
ENSPTRG00000006025	LIG4	100	90.779	ENSMLUG00000001267	LIG4	100	90.779	Myotis_lucifugus
ENSPTRG00000006025	LIG4	100	87.157	ENSNGAG00000013258	Lig4	100	87.157	Nannospalax_galili
ENSPTRG00000006025	LIG4	99	66.117	ENSNBRG00000021252	lig4	99	66.117	Neolamprologus_brichardi
ENSPTRG00000006025	LIG4	100	97.366	ENSNLEG00000007888	LIG4	100	97.366	Nomascus_leucogenys
ENSPTRG00000006025	LIG4	100	88.145	ENSOPRG00000005765	LIG4	100	88.145	Ochotona_princeps
ENSPTRG00000006025	LIG4	100	87.377	ENSODEG00000019683	LIG4	100	87.377	Octodon_degus
ENSPTRG00000006025	LIG4	99	65.787	ENSONIG00000011969	lig4	98	66.007	Oreochromis_niloticus
ENSPTRG00000006025	LIG4	100	91.109	ENSOCUG00000015734	LIG4	100	91.109	Oryctolagus_cuniculus
ENSPTRG00000006025	LIG4	99	64.725	ENSORLG00000004041	lig4	99	64.725	Oryzias_latipes
ENSPTRG00000006025	LIG4	99	65.055	ENSORLG00020019607	lig4	99	65.055	Oryzias_latipes_hni
ENSPTRG00000006025	LIG4	99	64.615	ENSORLG00015017754	lig4	99	64.615	Oryzias_latipes_hsok
ENSPTRG00000006025	LIG4	74	70.414	ENSOMEG00000003459	lig4	98	70.414	Oryzias_melastigma
ENSPTRG00000006025	LIG4	100	91.557	ENSOGAG00000032120	LIG4	99	91.557	Otolemur_garnettii
ENSPTRG00000006025	LIG4	82	90.604	ENSOARG00000005590	LIG4	98	90.604	Ovis_aries
ENSPTRG00000006025	LIG4	100	99.890	ENSPPAG00000032998	LIG4	100	99.890	Pan_paniscus
ENSPTRG00000006025	LIG4	100	90.231	ENSPPRG00000017804	LIG4	100	90.231	Panthera_pardus
ENSPTRG00000006025	LIG4	100	90.121	ENSPTIG00000010051	LIG4	100	90.121	Panthera_tigris_altaica
ENSPTRG00000006025	LIG4	100	96.926	ENSPANG00000007562	LIG4	100	96.926	Papio_anubis
ENSPTRG00000006025	LIG4	99	66.850	ENSPKIG00000011645	lig4	98	66.850	Paramormyrops_kingsleyae
ENSPTRG00000006025	LIG4	99	78.901	ENSPSIG00000001504	LIG4	99	78.901	Pelodiscus_sinensis
ENSPTRG00000006025	LIG4	99	63.667	ENSPMGG00000013486	lig4	99	63.227	Periophthalmus_magnuspinnatus
ENSPTRG00000006025	LIG4	100	86.842	ENSPEMG00000000076	Lig4	100	86.842	Peromyscus_maniculatus_bairdii
ENSPTRG00000006025	LIG4	100	84.320	ENSPCIG00000021882	LIG4	100	84.320	Phascolarctos_cinereus
ENSPTRG00000006025	LIG4	99	65.740	ENSPFOG00000000797	lig4	99	65.495	Poecilia_formosa
ENSPTRG00000006025	LIG4	99	65.628	ENSPLAG00000001196	lig4	99	65.385	Poecilia_latipinna
ENSPTRG00000006025	LIG4	99	65.740	ENSPMEG00000021353	lig4	99	65.604	Poecilia_mexicana
ENSPTRG00000006025	LIG4	99	65.517	ENSPREG00000007323	lig4	99	65.165	Poecilia_reticulata
ENSPTRG00000006025	LIG4	100	97.914	ENSPPYG00000005540	LIG4	100	97.914	Pongo_abelii
ENSPTRG00000006025	LIG4	100	90.560	ENSPVAG00000016403	LIG4	100	90.560	Pteropus_vampyrus
ENSPTRG00000006025	LIG4	99	65.787	ENSPNYG00000009660	lig4	99	65.787	Pundamilia_nyererei
ENSPTRG00000006025	LIG4	100	64.583	ENSPNAG00000028056	lig4	100	64.583	Pygocentrus_nattereri
ENSPTRG00000006025	LIG4	100	64.583	ENSPNAG00000028069	LIG4	100	64.583	Pygocentrus_nattereri
ENSPTRG00000006025	LIG4	100	86.059	ENSRNOG00000014605	Lig4	100	86.059	Rattus_norvegicus
ENSPTRG00000006025	LIG4	100	95.390	ENSRBIG00000039962	LIG4	100	95.390	Rhinopithecus_bieti
ENSPTRG00000006025	LIG4	100	96.378	ENSRROG00000006040	LIG4	100	96.378	Rhinopithecus_roxellana
ENSPTRG00000006025	LIG4	100	94.512	ENSSBOG00000019029	LIG4	100	94.512	Saimiri_boliviensis_boliviensis
ENSPTRG00000006025	LIG4	100	80.571	ENSSHAG00000009525	LIG4	100	81.140	Sarcophilus_harrisii
ENSPTRG00000006025	LIG4	100	65.721	ENSSFOG00015012835	lig4	100	65.721	Scleropages_formosus
ENSPTRG00000006025	LIG4	99	63.898	ENSSMAG00000011267	lig4	99	63.898	Scophthalmus_maximus
ENSPTRG00000006025	LIG4	99	67.073	ENSSDUG00000010343	lig4	98	67.073	Seriola_dumerili
ENSPTRG00000006025	LIG4	99	65.165	ENSSLDG00000003239	lig4	99	65.165	Seriola_lalandi_dorsalis
ENSPTRG00000006025	LIG4	100	83.479	ENSSARG00000006573	LIG4	100	83.479	Sorex_araneus
ENSPTRG00000006025	LIG4	93	77.607	ENSSPUG00000002444	LIG4	100	77.607	Sphenodon_punctatus
ENSPTRG00000006025	LIG4	99	65.824	ENSSPAG00000001609	lig4	99	65.824	Stegastes_partitus
ENSPTRG00000006025	LIG4	100	88.474	ENSSSCG00000009540	LIG4	100	88.474	Sus_scrofa
ENSPTRG00000006025	LIG4	99	75.553	ENSTGUG00000010795	LIG4	99	75.553	Taeniopygia_guttata
ENSPTRG00000006025	LIG4	99	65.385	ENSTRUG00000009984	lig4	99	65.385	Takifugu_rubripes
ENSPTRG00000006025	LIG4	99	65.275	ENSTNIG00000010348	lig4	99	65.495	Tetraodon_nigroviridis
ENSPTRG00000006025	LIG4	100	91.109	ENSTBEG00000017741	LIG4	100	91.109	Tupaia_belangeri
ENSPTRG00000006025	LIG4	100	89.243	ENSTTRG00000012660	LIG4	100	89.243	Tursiops_truncatus
ENSPTRG00000006025	LIG4	100	88.913	ENSUAMG00000003773	LIG4	100	88.913	Ursus_americanus
ENSPTRG00000006025	LIG4	99	73.018	ENSXETG00000002654	lig4	99	73.018	Xenopus_tropicalis
ENSPTRG00000006025	LIG4	99	65.517	ENSXCOG00000017401	lig4	99	65.055	Xiphophorus_couchianus
ENSPTRG00000006025	LIG4	99	65.778	ENSXMAG00000015142	lig4	99	65.313	Xiphophorus_maculatus