EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000006093 (Gene tree)
Gene ID: 465200
Gene Symbol: APEX1
Alias: -
Full Name: apurinic/apyrimidinic endodeoxyribonuclease 1
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 2627 bases
Position: chr14:4195088-4197714
Accession: 8393
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000093606	Exo_endo_phos	PF03372.23	1.5e-21	1	1
ENSPTRP00000010344	Exo_endo_phos	PF03372.23	2.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000011181	-	1544	XM_009427356	ENSPTRP00000010344	318 (aa)	XP_009425631	A2T6Y4
ENSPTRT00000102890	-	942	-	ENSPTRP00000093606	313 (aa)	-	A0A2I3TWI8
ENSPTRT00000090608	-	45	-	ENSPTRP00000067990	14 (aa)	-	A0A2I3RTF3

Gene Model

Click here to download ENSPTRG00000006093's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000006093's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000006093	APEX1	100	99.686	ENSG00000100823	APEX1	100	100.000	Homo_sapiens
ENSPTRG00000006093	APEX1	89	69.534	ENSAPOG00000017002	apex1	91	69.534	Acanthochromis_polyacanthus
ENSPTRG00000006093	APEX1	100	95.912	ENSAMEG00000005418	APEX1	100	95.912	Ailuropoda_melanoleuca
ENSPTRG00000006093	APEX1	89	71.223	ENSACIG00000010653	apex1	94	71.326	Amphilophus_citrinellus
ENSPTRG00000006093	APEX1	89	69.534	ENSAOCG00000009649	apex1	90	69.534	Amphiprion_ocellaris
ENSPTRG00000006093	APEX1	89	69.534	ENSAPEG00000021453	apex1	90	69.534	Amphiprion_percula
ENSPTRG00000006093	APEX1	88	71.168	ENSATEG00000002883	apex1	97	67.097	Anabas_testudineus
ENSPTRG00000006093	APEX1	100	69.565	ENSACAG00000008099	APEX1	100	69.565	Anolis_carolinensis
ENSPTRG00000006093	APEX1	100	98.113	ENSANAG00000030117	APEX1	100	98.113	Aotus_nancymaae
ENSPTRG00000006093	APEX1	88	72.000	ENSACLG00000018441	apex1	99	66.038	Astatotilapia_calliptera
ENSPTRG00000006093	APEX1	100	65.625	ENSAMXG00000034699	apex1	100	65.625	Astyanax_mexicanus
ENSPTRG00000006093	APEX1	100	94.025	ENSBTAG00000002745	APEX1	100	94.025	Bos_taurus
ENSPTRG00000006093	APEX1	81	44.922	WBGene00001372	exo-3	88	44.922	Caenorhabditis_elegans
ENSPTRG00000006093	APEX1	100	98.742	ENSCJAG00000009726	APEX1	100	98.742	Callithrix_jacchus
ENSPTRG00000006093	APEX1	100	95.597	ENSCAFG00000032033	APEX1	100	95.597	Canis_familiaris
ENSPTRG00000006093	APEX1	54	92.442	ENSCAFG00020023002	-	96	92.442	Canis_lupus_dingo
ENSPTRG00000006093	APEX1	100	95.597	ENSCAFG00020014377	-	100	95.597	Canis_lupus_dingo
ENSPTRG00000006093	APEX1	98	75.000	ENSCHIG00000014537	-	99	75.000	Capra_hircus
ENSPTRG00000006093	APEX1	100	93.396	ENSCHIG00000007298	-	100	93.396	Capra_hircus
ENSPTRG00000006093	APEX1	100	94.969	ENSTSYG00000034813	APEX1	100	94.969	Carlito_syrichta
ENSPTRG00000006093	APEX1	86	88.930	ENSCAPG00000016235	APEX1	91	97.881	Cavia_aperea
ENSPTRG00000006093	APEX1	100	94.654	ENSCPOG00000030909	APEX1	100	94.654	Cavia_porcellus
ENSPTRG00000006093	APEX1	100	85.220	ENSCCAG00000031931	-	100	85.220	Cebus_capucinus
ENSPTRG00000006093	APEX1	100	98.742	ENSCCAG00000033056	-	100	98.742	Cebus_capucinus
ENSPTRG00000006093	APEX1	100	98.742	ENSCATG00000015580	APEX1	100	98.742	Cercocebus_atys
ENSPTRG00000006093	APEX1	100	94.969	ENSCLAG00000001002	APEX1	100	94.969	Chinchilla_lanigera
ENSPTRG00000006093	APEX1	100	98.428	ENSCSAG00000016670	-	100	98.428	Chlorocebus_sabaeus
ENSPTRG00000006093	APEX1	100	98.428	ENSCSAG00000016685	-	100	98.428	Chlorocebus_sabaeus
ENSPTRG00000006093	APEX1	100	72.414	ENSCPBG00000009567	APEX1	100	72.414	Chrysemys_picta_bellii
ENSPTRG00000006093	APEX1	95	53.465	ENSCING00000008137	-	84	58.113	Ciona_intestinalis
ENSPTRG00000006093	APEX1	85	51.698	ENSCSAVG00000007144	-	100	52.510	Ciona_savignyi
ENSPTRG00000006093	APEX1	100	98.742	ENSCANG00000030726	APEX1	100	98.742	Colobus_angolensis_palliatus
ENSPTRG00000006093	APEX1	100	92.453	ENSCGRG00001017046	Apex1	100	92.453	Cricetulus_griseus_chok1gshd
ENSPTRG00000006093	APEX1	100	92.453	ENSCGRG00000008984	Apex1	100	92.453	Cricetulus_griseus_crigri
ENSPTRG00000006093	APEX1	99	65.176	ENSCSEG00000017499	apex1	99	65.094	Cynoglossus_semilaevis
ENSPTRG00000006093	APEX1	89	70.968	ENSCVAG00000022075	apex1	99	65.823	Cyprinodon_variegatus
ENSPTRG00000006093	APEX1	100	66.773	ENSDARG00000045843	apex1	100	66.773	Danio_rerio
ENSPTRG00000006093	APEX1	100	89.623	ENSDNOG00000042234	APEX1	95	89.623	Dasypus_novemcinctus
ENSPTRG00000006093	APEX1	100	94.654	ENSDORG00000001616	Apex1	100	94.654	Dipodomys_ordii
ENSPTRG00000006093	APEX1	100	94.025	ENSETEG00000004855	-	100	94.025	Echinops_telfairi
ENSPTRG00000006093	APEX1	76	64.854	ENSEBUG00000000622	-	92	64.854	Eptatretus_burgeri
ENSPTRG00000006093	APEX1	100	96.541	ENSEASG00005017489	APEX1	74	96.541	Equus_asinus_asinus
ENSPTRG00000006093	APEX1	100	96.541	ENSECAG00000022325	APEX1	82	96.541	Equus_caballus
ENSPTRG00000006093	APEX1	92	93.750	ENSEEUG00000012569	APEX1	100	93.750	Erinaceus_europaeus
ENSPTRG00000006093	APEX1	100	65.517	ENSELUG00000021706	apex1	100	65.938	Esox_lucius
ENSPTRG00000006093	APEX1	100	96.541	ENSFCAG00000030869	APEX1	100	96.541	Felis_catus
ENSPTRG00000006093	APEX1	100	93.711	ENSFDAG00000006120	APEX1	100	93.711	Fukomys_damarensis
ENSPTRG00000006093	APEX1	99	67.405	ENSFHEG00000009031	apex1	83	67.405	Fundulus_heteroclitus
ENSPTRG00000006093	APEX1	99	61.736	ENSGMOG00000007943	apex1	99	61.538	Gadus_morhua
ENSPTRG00000006093	APEX1	99	67.089	ENSGAFG00000005311	apex1	99	67.089	Gambusia_affinis
ENSPTRG00000006093	APEX1	99	65.916	ENSGACG00000019497	apex1	99	69.173	Gasterosteus_aculeatus
ENSPTRG00000006093	APEX1	100	72.100	ENSGAGG00000014999	APEX1	100	72.100	Gopherus_agassizii
ENSPTRG00000006093	APEX1	100	99.371	ENSGGOG00000002128	APEX1	100	99.371	Gorilla_gorilla
ENSPTRG00000006093	APEX1	99	66.139	ENSHBUG00000005894	apex1	99	66.559	Haplochromis_burtoni
ENSPTRG00000006093	APEX1	100	94.654	ENSHGLG00000002848	APEX1	100	94.654	Heterocephalus_glaber_female
ENSPTRG00000006093	APEX1	100	94.654	ENSHGLG00100017878	APEX1	100	94.654	Heterocephalus_glaber_male
ENSPTRG00000006093	APEX1	99	66.144	ENSHCOG00000009961	apex1	99	65.723	Hippocampus_comes
ENSPTRG00000006093	APEX1	100	67.712	ENSIPUG00000005799	apex1	100	67.398	Ictalurus_punctatus
ENSPTRG00000006093	APEX1	100	94.025	ENSSTOG00000010096	APEX1	100	94.025	Ictidomys_tridecemlineatus
ENSPTRG00000006093	APEX1	100	82.428	ENSJJAG00000020465	-	100	82.428	Jaculus_jaculus
ENSPTRG00000006093	APEX1	100	94.340	ENSJJAG00000012067	-	100	94.340	Jaculus_jaculus
ENSPTRG00000006093	APEX1	100	84.906	ENSJJAG00000003660	-	100	84.906	Jaculus_jaculus
ENSPTRG00000006093	APEX1	89	71.326	ENSKMAG00000021171	apex1	99	66.139	Kryptolebias_marmoratus
ENSPTRG00000006093	APEX1	89	68.459	ENSLBEG00000010248	apex1	99	64.217	Labrus_bergylta
ENSPTRG00000006093	APEX1	100	67.601	ENSLACG00000008617	APEX1	100	66.984	Latimeria_chalumnae
ENSPTRG00000006093	APEX1	100	66.770	ENSLOCG00000015516	apex1	99	66.355	Lepisosteus_oculatus
ENSPTRG00000006093	APEX1	100	94.340	ENSLAFG00000021872	APEX1	100	94.340	Loxodonta_africana
ENSPTRG00000006093	APEX1	100	98.113	ENSMFAG00000002565	APEX1	100	98.113	Macaca_fascicularis
ENSPTRG00000006093	APEX1	100	98.428	ENSMMUG00000048039	APEX1	100	98.428	Macaca_mulatta
ENSPTRG00000006093	APEX1	100	98.428	ENSMNEG00000036944	APEX1	100	98.428	Macaca_nemestrina
ENSPTRG00000006093	APEX1	100	98.742	ENSMLEG00000042125	APEX1	100	98.742	Mandrillus_leucophaeus
ENSPTRG00000006093	APEX1	99	63.975	ENSMAMG00000023526	apex1	99	66.456	Mastacembelus_armatus
ENSPTRG00000006093	APEX1	88	72.000	ENSMZEG00005014187	apex1	99	66.038	Maylandia_zebra
ENSPTRG00000006093	APEX1	100	93.396	ENSMAUG00000013994	Apex1	100	93.396	Mesocricetus_auratus
ENSPTRG00000006093	APEX1	100	95.597	ENSMICG00000043554	APEX1	100	95.597	Microcebus_murinus
ENSPTRG00000006093	APEX1	100	92.453	ENSMOCG00000013721	Apex1	100	92.453	Microtus_ochrogaster
ENSPTRG00000006093	APEX1	89	67.500	ENSMMOG00000010031	apex1	87	67.500	Mola_mola
ENSPTRG00000006093	APEX1	100	83.750	ENSMODG00000007125	APEX1	100	83.851	Monodelphis_domestica
ENSPTRG00000006093	APEX1	89	64.158	ENSMALG00000011699	apex1	75	64.158	Monopterus_albus
ENSPTRG00000006093	APEX1	99	94.006	MGP_CAROLIEiJ_G0019209	Apex1	99	94.006	Mus_caroli
ENSPTRG00000006093	APEX1	100	94.654	ENSMUSG00000035960	Apex1	100	94.654	Mus_musculus
ENSPTRG00000006093	APEX1	100	94.654	MGP_PahariEiJ_G0030232	Apex1	100	94.654	Mus_pahari
ENSPTRG00000006093	APEX1	100	94.654	MGP_SPRETEiJ_G0020101	Apex1	100	94.654	Mus_spretus
ENSPTRG00000006093	APEX1	100	94.375	ENSMLUG00000028957	APEX1	100	94.375	Myotis_lucifugus
ENSPTRG00000006093	APEX1	100	70.126	ENSNGAG00000021748	-	99	70.126	Nannospalax_galili
ENSPTRG00000006093	APEX1	100	93.396	ENSNGAG00000002725	-	100	93.396	Nannospalax_galili
ENSPTRG00000006093	APEX1	88	71.636	ENSNBRG00000005334	apex1	91	65.723	Neolamprologus_brichardi
ENSPTRG00000006093	APEX1	100	99.042	ENSNLEG00000010839	APEX1	100	99.042	Nomascus_leucogenys
ENSPTRG00000006093	APEX1	100	87.421	ENSMEUG00000014519	APEX1	100	87.421	Notamacropus_eugenii
ENSPTRG00000006093	APEX1	100	93.711	ENSOPRG00000014029	APEX1	100	93.396	Ochotona_princeps
ENSPTRG00000006093	APEX1	97	75.405	ENSODEG00000004777	-	99	75.405	Octodon_degus
ENSPTRG00000006093	APEX1	100	72.222	ENSODEG00000006583	-	100	72.222	Octodon_degus
ENSPTRG00000006093	APEX1	100	94.969	ENSODEG00000001703	-	100	94.969	Octodon_degus
ENSPTRG00000006093	APEX1	89	71.942	ENSONIG00000012089	apex1	99	66.352	Oreochromis_niloticus
ENSPTRG00000006093	APEX1	91	82.456	ENSOANG00000008836	APEX1	80	77.160	Ornithorhynchus_anatinus
ENSPTRG00000006093	APEX1	100	94.969	ENSOCUG00000005022	APEX1	100	94.969	Oryctolagus_cuniculus
ENSPTRG00000006093	APEX1	99	66.881	ENSORLG00000012378	apex1	99	66.881	Oryzias_latipes
ENSPTRG00000006093	APEX1	99	66.881	ENSORLG00020021371	apex1	99	66.881	Oryzias_latipes_hni
ENSPTRG00000006093	APEX1	99	66.881	ENSORLG00015020089	apex1	99	66.881	Oryzias_latipes_hsok
ENSPTRG00000006093	APEX1	99	66.667	ENSOMEG00000018876	apex1	99	66.667	Oryzias_melastigma
ENSPTRG00000006093	APEX1	98	83.974	ENSOGAG00000029355	-	100	83.974	Otolemur_garnettii
ENSPTRG00000006093	APEX1	100	94.654	ENSOGAG00000013335	-	100	94.654	Otolemur_garnettii
ENSPTRG00000006093	APEX1	97	89.610	ENSOARG00000001876	-	100	89.610	Ovis_aries
ENSPTRG00000006093	APEX1	100	92.453	ENSOARG00000019740	-	100	92.453	Ovis_aries
ENSPTRG00000006093	APEX1	99	78.481	ENSOARG00000014424	-	100	78.481	Ovis_aries
ENSPTRG00000006093	APEX1	100	100.000	ENSPPAG00000038760	APEX1	100	100.000	Pan_paniscus
ENSPTRG00000006093	APEX1	100	96.855	ENSPPRG00000011794	APEX1	100	96.855	Panthera_pardus
ENSPTRG00000006093	APEX1	100	96.541	ENSPTIG00000014829	APEX1	100	96.541	Panthera_tigris_altaica
ENSPTRG00000006093	APEX1	100	98.742	ENSPANG00000022757	APEX1	100	98.742	Papio_anubis
ENSPTRG00000006093	APEX1	88	68.592	ENSPKIG00000003504	apex1	100	64.486	Paramormyrops_kingsleyae
ENSPTRG00000006093	APEX1	77	66.667	ENSPMGG00000016596	apex1	73	66.667	Periophthalmus_magnuspinnatus
ENSPTRG00000006093	APEX1	100	94.025	ENSPEMG00000019097	Apex1	100	94.025	Peromyscus_maniculatus_bairdii
ENSPTRG00000006093	APEX1	96	66.333	ENSPMAG00000007275	-	95	69.039	Petromyzon_marinus
ENSPTRG00000006093	APEX1	100	84.013	ENSPCIG00000023274	APEX1	100	84.112	Phascolarctos_cinereus
ENSPTRG00000006093	APEX1	89	72.043	ENSPFOG00000004178	apex1	99	67.089	Poecilia_formosa
ENSPTRG00000006093	APEX1	89	71.685	ENSPLAG00000012779	apex1	99	66.772	Poecilia_latipinna
ENSPTRG00000006093	APEX1	89	72.043	ENSPMEG00000019623	apex1	99	67.089	Poecilia_mexicana
ENSPTRG00000006093	APEX1	89	71.326	ENSPREG00000014298	apex1	99	66.456	Poecilia_reticulata
ENSPTRG00000006093	APEX1	100	98.742	ENSPPYG00000005565	APEX1	100	98.742	Pongo_abelii
ENSPTRG00000006093	APEX1	100	92.453	ENSPCAG00000010376	APEX1	100	92.453	Procavia_capensis
ENSPTRG00000006093	APEX1	100	95.597	ENSPCOG00000021564	APEX1	100	95.597	Propithecus_coquereli
ENSPTRG00000006093	APEX1	100	95.625	ENSPVAG00000010736	APEX1	100	95.625	Pteropus_vampyrus
ENSPTRG00000006093	APEX1	88	72.000	ENSPNYG00000023940	apex1	99	66.038	Pundamilia_nyererei
ENSPTRG00000006093	APEX1	93	65.541	ENSPNAG00000020897	apex1	96	65.424	Pygocentrus_nattereri
ENSPTRG00000006093	APEX1	100	93.711	ENSRNOG00000009663	Apex1	100	93.711	Rattus_norvegicus
ENSPTRG00000006093	APEX1	100	98.742	ENSRBIG00000038325	APEX1	99	98.742	Rhinopithecus_bieti
ENSPTRG00000006093	APEX1	100	98.428	ENSSBOG00000018921	-	100	98.428	Saimiri_boliviensis_boliviensis
ENSPTRG00000006093	APEX1	100	84.665	ENSSBOG00000031372	-	100	84.665	Saimiri_boliviensis_boliviensis
ENSPTRG00000006093	APEX1	100	83.642	ENSSHAG00000013524	APEX1	100	83.642	Sarcophilus_harrisii
ENSPTRG00000006093	APEX1	88	66.426	ENSSFOG00015001948	apex1	100	61.981	Scleropages_formosus
ENSPTRG00000006093	APEX1	89	69.424	ENSSMAG00000013348	apex1	99	65.300	Scophthalmus_maximus
ENSPTRG00000006093	APEX1	89	69.534	ENSSDUG00000016377	apex1	99	66.238	Seriola_dumerili
ENSPTRG00000006093	APEX1	89	70.251	ENSSLDG00000023005	apex1	99	66.881	Seriola_lalandi_dorsalis
ENSPTRG00000006093	APEX1	91	73.239	ENSSPUG00000000531	APEX1	96	73.239	Sphenodon_punctatus
ENSPTRG00000006093	APEX1	89	69.892	ENSSPAG00000000458	apex1	99	64.873	Stegastes_partitus
ENSPTRG00000006093	APEX1	100	94.654	ENSSSCG00000040060	-	100	94.654	Sus_scrofa
ENSPTRG00000006093	APEX1	94	58.278	ENSSSCG00000039705	-	92	59.507	Sus_scrofa
ENSPTRG00000006093	APEX1	75	60.593	ENSTGUG00000014378	APEX1	100	60.593	Taeniopygia_guttata
ENSPTRG00000006093	APEX1	89	67.986	ENSTRUG00000004268	apex1	84	68.100	Takifugu_rubripes
ENSPTRG00000006093	APEX1	99	64.873	ENSTNIG00000005778	apex1	99	64.309	Tetraodon_nigroviridis
ENSPTRG00000006093	APEX1	100	92.138	ENSTBEG00000006405	APEX1	100	92.138	Tupaia_belangeri
ENSPTRG00000006093	APEX1	75	95.763	ENSTTRG00000007860	APEX1	100	95.763	Tursiops_truncatus
ENSPTRG00000006093	APEX1	100	95.597	ENSUAMG00000010457	APEX1	100	95.597	Ursus_americanus
ENSPTRG00000006093	APEX1	100	95.597	ENSUMAG00000009178	APEX1	100	95.597	Ursus_maritimus
ENSPTRG00000006093	APEX1	75	90.678	ENSVPAG00000005083	APEX1	100	90.678	Vicugna_pacos
ENSPTRG00000006093	APEX1	100	94.969	ENSVVUG00000009010	APEX1	100	94.969	Vulpes_vulpes
ENSPTRG00000006093	APEX1	100	66.563	ENSXETG00000024773	apex1	100	66.563	Xenopus_tropicalis
ENSPTRG00000006093	APEX1	89	71.685	ENSXCOG00000015233	apex1	99	66.772	Xiphophorus_couchianus
ENSPTRG00000006093	APEX1	100	67.732	ENSXMAG00000006195	apex1	99	66.772	Xiphophorus_maculatus