EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000007792 (Gene tree)
Gene ID: 453936
Gene Symbol: PARN
Alias: -
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 192361 bases
Position: chr16:14881472-15073832
Accession: 13784
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000074078	R3H	PF01424.22	6.6e-05	1	1
ENSPTRP00000013293	R3H	PF01424.22	7.4e-05	1	1
ENSPTRP00000063495	RNA_bind	PF08675.11	1.2e-33	1	1
ENSPTRP00000074078	RNA_bind	PF08675.11	1.7e-33	1	1
ENSPTRP00000073234	RNA_bind	PF08675.11	1.7e-33	1	1
ENSPTRP00000013293	RNA_bind	PF08675.11	1.8e-33	1	1
ENSPTRP00000013293	CAF1	PF04857.20	7.4e-89	1	1
ENSPTRP00000073234	CAF1	PF04857.20	8.7e-78	1	1
ENSPTRP00000074078	CAF1	PF04857.20	6.4e-68	1	2
ENSPTRP00000074078	CAF1	PF04857.20	6.4e-68	2	2
ENSPTRP00000063495	CAF1	PF04857.20	2.2e-52	1	2
ENSPTRP00000063495	CAF1	PF04857.20	2.2e-52	2	2
ENSPTRP00000083967	CAF1	PF04857.20	9.9e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000014343	-	2906	XM_016929457	ENSPTRP00000013293	639 (aa)	XP_016784946	K7BWE4
ENSPTRT00000080982	-	339	-	ENSPTRP00000083967	65 (aa)	-	A0A2I3T413
ENSPTRT00000087757	-	1851	-	ENSPTRP00000073234	616 (aa)	-	A0A2I3S9Q8
ENSPTRT00000109984	-	1782	-	ENSPTRP00000074078	593 (aa)	-	A0A2I3SAJ4
ENSPTRT00000105262	-	1395	-	ENSPTRP00000063495	464 (aa)	-	A0A2I3RFM9

Gene Model

Click here to download ENSPTRG00000007792's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000007792's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000007792	PARN	100	100.000	ENSG00000140694	PARN	100	100.000	Homo_sapiens
ENSPTRG00000007792	PARN	92	80.000	ENSAPOG00000019730	-	100	68.778	Acanthochromis_polyacanthus
ENSPTRG00000007792	PARN	100	96.610	ENSAMEG00000011208	PARN	100	92.500	Ailuropoda_melanoleuca
ENSPTRG00000007792	PARN	92	78.333	ENSACIG00000000619	parn	83	76.306	Amphilophus_citrinellus
ENSPTRG00000007792	PARN	91	77.966	ENSAOCG00000003465	parn	84	73.604	Amphiprion_ocellaris
ENSPTRG00000007792	PARN	74	77.568	ENSAPEG00000010661	parn	91	77.568	Amphiprion_percula
ENSPTRG00000007792	PARN	94	76.271	ENSATEG00000004661	parn	88	72.052	Anabas_testudineus
ENSPTRG00000007792	PARN	99	87.037	ENSAPLG00000013914	PARN	99	84.543	Anas_platyrhynchos
ENSPTRG00000007792	PARN	100	89.831	ENSACAG00000004973	PARN	100	78.462	Anolis_carolinensis
ENSPTRG00000007792	PARN	100	100.000	ENSANAG00000031516	PARN	100	100.000	Aotus_nancymaae
ENSPTRG00000007792	PARN	91	77.966	ENSACLG00000004742	parn	84	74.701	Astatotilapia_calliptera
ENSPTRG00000007792	PARN	91	79.661	ENSAMXG00000012390	parn	100	66.816	Astyanax_mexicanus
ENSPTRG00000007792	PARN	100	98.305	ENSBTAG00000018097	PARN	100	93.599	Bos_taurus
ENSPTRG00000007792	PARN	100	100.000	ENSCJAG00000015866	PARN	100	100.000	Callithrix_jacchus
ENSPTRG00000007792	PARN	100	94.915	ENSCAFG00000018795	PARN	100	92.645	Canis_familiaris
ENSPTRG00000007792	PARN	100	96.610	ENSCAFG00020024126	PARN	100	92.645	Canis_lupus_dingo
ENSPTRG00000007792	PARN	100	98.305	ENSCHIG00000018143	PARN	100	94.053	Capra_hircus
ENSPTRG00000007792	PARN	60	77.500	ENSCAPG00000007984	PARN	78	64.847	Cavia_aperea
ENSPTRG00000007792	PARN	100	98.305	ENSCPOG00000002263	PARN	100	90.767	Cavia_porcellus
ENSPTRG00000007792	PARN	100	100.000	ENSCCAG00000030367	PARN	100	100.000	Cebus_capucinus
ENSPTRG00000007792	PARN	91	100.000	ENSCATG00000041368	PARN	100	100.000	Cercocebus_atys
ENSPTRG00000007792	PARN	52	35.862	ENSCATG00000033196	PNLDC1	70	35.862	Cercocebus_atys
ENSPTRG00000007792	PARN	100	96.610	ENSCLAG00000015406	PARN	99	90.610	Chinchilla_lanigera
ENSPTRG00000007792	PARN	100	100.000	ENSCSAG00000008142	PARN	100	98.592	Chlorocebus_sabaeus
ENSPTRG00000007792	PARN	98	98.077	ENSCHOG00000007014	PARN	100	76.582	Choloepus_hoffmanni
ENSPTRG00000007792	PARN	89	85.283	ENSCPBG00000006609	PARN	97	86.034	Chrysemys_picta_bellii
ENSPTRG00000007792	PARN	88	47.368	ENSCING00000010142	-	99	44.465	Ciona_intestinalis
ENSPTRG00000007792	PARN	91	100.000	ENSCANG00000023734	-	100	86.364	Colobus_angolensis_palliatus
ENSPTRG00000007792	PARN	100	100.000	ENSCANG00000028849	-	100	100.000	Colobus_angolensis_palliatus
ENSPTRG00000007792	PARN	100	96.610	ENSCGRG00001012096	Parn	100	85.514	Cricetulus_griseus_chok1gshd
ENSPTRG00000007792	PARN	100	96.610	ENSCGRG00000004939	Parn	100	85.514	Cricetulus_griseus_crigri
ENSPTRG00000007792	PARN	94	79.661	ENSCSEG00000002064	parn	100	64.706	Cynoglossus_semilaevis
ENSPTRG00000007792	PARN	91	77.966	ENSCVAG00000014848	parn	83	73.459	Cyprinodon_variegatus
ENSPTRG00000007792	PARN	100	71.186	ENSDARG00000102634	parn	100	64.286	Danio_rerio
ENSPTRG00000007792	PARN	100	98.305	ENSDNOG00000000833	PARN	100	92.958	Dasypus_novemcinctus
ENSPTRG00000007792	PARN	91	96.610	ENSDORG00000027812	-	100	87.273	Dipodomys_ordii
ENSPTRG00000007792	PARN	92	95.000	ENSETEG00000014828	-	78	94.297	Echinops_telfairi
ENSPTRG00000007792	PARN	56	30.086	ENSEBUG00000008118	PNLDC1	61	30.086	Eptatretus_burgeri
ENSPTRG00000007792	PARN	76	52.394	ENSEBUG00000007052	PARN	70	70.982	Eptatretus_burgeri
ENSPTRG00000007792	PARN	100	98.305	ENSEASG00005011400	PARN	100	92.488	Equus_asinus_asinus
ENSPTRG00000007792	PARN	100	96.610	ENSECAG00000017792	PARN	100	92.332	Equus_caballus
ENSPTRG00000007792	PARN	92	96.667	ENSEEUG00000010370	PARN	86	84.163	Erinaceus_europaeus
ENSPTRG00000007792	PARN	91	79.661	ENSELUG00000013139	parn	77	72.175	Esox_lucius
ENSPTRG00000007792	PARN	100	96.610	ENSFCAG00000044961	PARN	100	96.610	Felis_catus
ENSPTRG00000007792	PARN	98	88.462	ENSFALG00000003911	PARN	98	83.386	Ficedula_albicollis
ENSPTRG00000007792	PARN	100	98.305	ENSFDAG00000009234	PARN	100	90.297	Fukomys_damarensis
ENSPTRG00000007792	PARN	98	71.875	ENSFHEG00000013738	parn	100	71.875	Fundulus_heteroclitus
ENSPTRG00000007792	PARN	91	77.966	ENSGMOG00000003231	parn	97	77.052	Gadus_morhua
ENSPTRG00000007792	PARN	100	91.525	ENSGALG00000003091	PARN	100	82.271	Gallus_gallus
ENSPTRG00000007792	PARN	91	79.661	ENSGAFG00000011061	parn	84	72.819	Gambusia_affinis
ENSPTRG00000007792	PARN	91	74.576	ENSGACG00000019501	parn	100	68.413	Gasterosteus_aculeatus
ENSPTRG00000007792	PARN	70	79.755	ENSGAGG00000023281	PARN	83	81.818	Gopherus_agassizii
ENSPTRG00000007792	PARN	100	100.000	ENSGGOG00000025224	PARN	100	100.000	Gorilla_gorilla
ENSPTRG00000007792	PARN	91	77.966	ENSHBUG00000017906	parn	90	77.467	Haplochromis_burtoni
ENSPTRG00000007792	PARN	100	98.305	ENSHGLG00000010886	PARN	100	90.610	Heterocephalus_glaber_female
ENSPTRG00000007792	PARN	100	98.305	ENSHGLG00100014659	PARN	100	90.610	Heterocephalus_glaber_male
ENSPTRG00000007792	PARN	80	84.615	ENSHCOG00000008683	parn	91	73.724	Hippocampus_comes
ENSPTRG00000007792	PARN	91	69.492	ENSIPUG00000012401	parn	84	62.995	Ictalurus_punctatus
ENSPTRG00000007792	PARN	100	96.610	ENSSTOG00000007519	PARN	100	91.236	Ictidomys_tridecemlineatus
ENSPTRG00000007792	PARN	100	98.305	ENSJJAG00000023049	Parn	100	87.793	Jaculus_jaculus
ENSPTRG00000007792	PARN	91	76.271	ENSKMAG00000009462	parn	84	73.891	Kryptolebias_marmoratus
ENSPTRG00000007792	PARN	91	77.966	ENSLBEG00000009167	parn	90	72.835	Labrus_bergylta
ENSPTRG00000007792	PARN	79	78.373	ENSLACG00000004207	PARN	100	77.358	Latimeria_chalumnae
ENSPTRG00000007792	PARN	91	81.356	ENSLOCG00000000715	parn	87	73.520	Lepisosteus_oculatus
ENSPTRG00000007792	PARN	100	98.305	ENSLAFG00000015036	PARN	100	92.801	Loxodonta_africana
ENSPTRG00000007792	PARN	100	100.000	ENSMFAG00000044852	PARN	100	100.000	Macaca_fascicularis
ENSPTRG00000007792	PARN	100	100.000	ENSMMUG00000018849	PARN	100	100.000	Macaca_mulatta
ENSPTRG00000007792	PARN	100	100.000	ENSMNEG00000045108	PARN	100	100.000	Macaca_nemestrina
ENSPTRG00000007792	PARN	100	100.000	ENSMLEG00000031743	PARN	100	100.000	Mandrillus_leucophaeus
ENSPTRG00000007792	PARN	91	77.966	ENSMAMG00000006939	parn	84	72.819	Mastacembelus_armatus
ENSPTRG00000007792	PARN	91	77.966	ENSMZEG00005013590	parn	90	77.239	Maylandia_zebra
ENSPTRG00000007792	PARN	94	100.000	ENSMGAG00000001004	PARN	95	82.382	Meleagris_gallopavo
ENSPTRG00000007792	PARN	95	94.286	ENSMAUG00000008025	Parn	100	80.154	Mesocricetus_auratus
ENSPTRG00000007792	PARN	100	98.462	ENSMICG00000016053	PARN	100	98.462	Microcebus_murinus
ENSPTRG00000007792	PARN	91	94.915	ENSMOCG00000022211	Parn	100	90.891	Microtus_ochrogaster
ENSPTRG00000007792	PARN	91	79.661	ENSMMOG00000011333	parn	87	76.075	Mola_mola
ENSPTRG00000007792	PARN	92	90.000	ENSMODG00000004915	PARN	99	94.153	Monodelphis_domestica
ENSPTRG00000007792	PARN	91	76.667	ENSMALG00000019426	parn	91	79.143	Monopterus_albus
ENSPTRG00000007792	PARN	100	94.915	MGP_CAROLIEiJ_G0020466	Parn	100	86.228	Mus_caroli
ENSPTRG00000007792	PARN	100	93.220	ENSMUSG00000022685	Parn	100	91.463	Mus_musculus
ENSPTRG00000007792	PARN	100	96.610	MGP_PahariEiJ_G0016172	Parn	100	86.072	Mus_pahari
ENSPTRG00000007792	PARN	100	94.915	MGP_SPRETEiJ_G0021361	Parn	100	86.228	Mus_spretus
ENSPTRG00000007792	PARN	100	98.305	ENSMPUG00000014464	PARN	100	92.645	Mustela_putorius_furo
ENSPTRG00000007792	PARN	91	94.915	ENSMLUG00000005414	PARN	100	94.332	Myotis_lucifugus
ENSPTRG00000007792	PARN	91	98.305	ENSNGAG00000024082	-	100	87.727	Nannospalax_galili
ENSPTRG00000007792	PARN	91	77.966	ENSNBRG00000006805	parn	90	76.966	Neolamprologus_brichardi
ENSPTRG00000007792	PARN	100	100.000	ENSNLEG00000010241	PARN	100	100.000	Nomascus_leucogenys
ENSPTRG00000007792	PARN	93	92.308	ENSMEUG00000008178	-	100	60.759	Notamacropus_eugenii
ENSPTRG00000007792	PARN	98	98.077	ENSOPRG00000012187	PARN	100	86.076	Ochotona_princeps
ENSPTRG00000007792	PARN	100	98.305	ENSODEG00000001617	PARN	100	81.776	Octodon_degus
ENSPTRG00000007792	PARN	100	77.966	ENSONIG00000000151	parn	100	69.892	Oreochromis_niloticus
ENSPTRG00000007792	PARN	82	82.415	ENSOANG00000020155	-	97	82.940	Ornithorhynchus_anatinus
ENSPTRG00000007792	PARN	99	91.352	ENSOCUG00000000322	PARN	100	91.352	Oryctolagus_cuniculus
ENSPTRG00000007792	PARN	100	76.923	ENSORLG00000024893	-	100	67.421	Oryzias_latipes
ENSPTRG00000007792	PARN	93	79.661	ENSORLG00020010313	parn	88	70.820	Oryzias_latipes_hni
ENSPTRG00000007792	PARN	93	79.661	ENSORLG00015000300	parn	88	70.820	Oryzias_latipes_hsok
ENSPTRG00000007792	PARN	91	79.661	ENSOMEG00000019555	parn	97	66.968	Oryzias_melastigma
ENSPTRG00000007792	PARN	92	98.333	ENSOGAG00000014626	PARN	100	94.343	Otolemur_garnettii
ENSPTRG00000007792	PARN	91	98.305	ENSOARG00000007574	PARN	100	97.773	Ovis_aries
ENSPTRG00000007792	PARN	100	100.000	ENSPPAG00000031438	PARN	100	100.000	Pan_paniscus
ENSPTRG00000007792	PARN	100	96.610	ENSPPRG00000018583	PARN	100	96.610	Panthera_pardus
ENSPTRG00000007792	PARN	100	96.610	ENSPTIG00000012135	PARN	100	96.610	Panthera_tigris_altaica
ENSPTRG00000007792	PARN	100	100.000	ENSPANG00000020099	PARN	100	100.000	Papio_anubis
ENSPTRG00000007792	PARN	96	79.661	ENSPKIG00000022807	parn	95	67.370	Paramormyrops_kingsleyae
ENSPTRG00000007792	PARN	98	89.831	ENSPSIG00000014804	PARN	100	83.391	Pelodiscus_sinensis
ENSPTRG00000007792	PARN	91	76.271	ENSPMGG00000014431	parn	75	74.770	Periophthalmus_magnuspinnatus
ENSPTRG00000007792	PARN	100	94.915	ENSPEMG00000018439	Parn	100	83.568	Peromyscus_maniculatus_bairdii
ENSPTRG00000007792	PARN	91	57.627	ENSPMAG00000003956	parn	99	67.308	Petromyzon_marinus
ENSPTRG00000007792	PARN	100	92.308	ENSPCIG00000001259	PARN	100	92.308	Phascolarctos_cinereus
ENSPTRG00000007792	PARN	91	79.661	ENSPFOG00000012823	parn	84	72.727	Poecilia_formosa
ENSPTRG00000007792	PARN	91	79.661	ENSPLAG00000006395	parn	84	72.896	Poecilia_latipinna
ENSPTRG00000007792	PARN	91	79.661	ENSPMEG00000007711	parn	84	73.064	Poecilia_mexicana
ENSPTRG00000007792	PARN	91	79.661	ENSPREG00000000147	parn	84	72.727	Poecilia_reticulata
ENSPTRG00000007792	PARN	100	98.771	ENSPPYG00000007123	PARN	100	98.752	Pongo_abelii
ENSPTRG00000007792	PARN	93	96.154	ENSPCAG00000001741	PARN	100	82.673	Procavia_capensis
ENSPTRG00000007792	PARN	100	98.462	ENSPCOG00000019292	PARN	100	98.462	Propithecus_coquereli
ENSPTRG00000007792	PARN	98	98.077	ENSPVAG00000002547	PARN	100	89.557	Pteropus_vampyrus
ENSPTRG00000007792	PARN	91	77.966	ENSPNYG00000006835	parn	90	74.488	Pundamilia_nyererei
ENSPTRG00000007792	PARN	84	73.371	ENSPNAG00000018905	parn	86	73.371	Pygocentrus_nattereri
ENSPTRG00000007792	PARN	100	93.220	ENSRNOG00000002912	Parn	98	87.879	Rattus_norvegicus
ENSPTRG00000007792	PARN	72	98.198	ENSRBIG00000018726	PARN	100	98.198	Rhinopithecus_bieti
ENSPTRG00000007792	PARN	92	98.333	ENSRROG00000020116	-	86	98.361	Rhinopithecus_roxellana
ENSPTRG00000007792	PARN	72	98.198	ENSRROG00000011162	-	100	98.198	Rhinopithecus_roxellana
ENSPTRG00000007792	PARN	100	100.000	ENSSBOG00000034726	PARN	100	100.000	Saimiri_boliviensis_boliviensis
ENSPTRG00000007792	PARN	83	88.889	ENSSHAG00000008493	PARN	94	93.301	Sarcophilus_harrisii
ENSPTRG00000007792	PARN	94	79.661	ENSSFOG00015014165	parn	94	72.867	Scleropages_formosus
ENSPTRG00000007792	PARN	91	76.271	ENSSMAG00000000685	parn	100	63.134	Scophthalmus_maximus
ENSPTRG00000007792	PARN	91	76.271	ENSSDUG00000014555	parn	83	73.379	Seriola_dumerili
ENSPTRG00000007792	PARN	91	76.271	ENSSLDG00000007603	-	100	63.801	Seriola_lalandi_dorsalis
ENSPTRG00000007792	PARN	91	80.172	ENSSARG00000014339	PARN	100	80.172	Sorex_araneus
ENSPTRG00000007792	PARN	100	89.831	ENSSPUG00000007719	PARN	100	84.820	Sphenodon_punctatus
ENSPTRG00000007792	PARN	91	77.966	ENSSPAG00000007095	parn	86	74.719	Stegastes_partitus
ENSPTRG00000007792	PARN	100	98.305	ENSSSCG00000007878	PARN	89	92.488	Sus_scrofa
ENSPTRG00000007792	PARN	99	87.037	ENSTGUG00000004971	PARN	99	83.123	Taeniopygia_guttata
ENSPTRG00000007792	PARN	55	30.556	ENSTGUG00000011418	PNLDC1	68	30.556	Taeniopygia_guttata
ENSPTRG00000007792	PARN	100	71.212	ENSTRUG00000015208	-	94	71.212	Takifugu_rubripes
ENSPTRG00000007792	PARN	100	79.661	ENSTNIG00000008252	parn	100	69.243	Tetraodon_nigroviridis
ENSPTRG00000007792	PARN	91	79.483	ENSTBEG00000010407	PARN	100	79.483	Tupaia_belangeri
ENSPTRG00000007792	PARN	98	98.077	ENSTTRG00000002843	PARN	100	88.766	Tursiops_truncatus
ENSPTRG00000007792	PARN	67	85.782	ENSUAMG00000008283	PARN	94	82.297	Ursus_americanus
ENSPTRG00000007792	PARN	100	98.305	ENSUMAG00000004527	PARN	100	92.958	Ursus_maritimus
ENSPTRG00000007792	PARN	95	98.077	ENSVPAG00000008968	PARN	100	89.577	Vicugna_pacos
ENSPTRG00000007792	PARN	100	96.610	ENSVVUG00000019509	PARN	100	93.114	Vulpes_vulpes
ENSPTRG00000007792	PARN	100	81.967	ENSXETG00000010994	parn	100	82.510	Xenopus_tropicalis
ENSPTRG00000007792	PARN	91	79.661	ENSXCOG00000015990	parn	96	69.036	Xiphophorus_couchianus
ENSPTRG00000007792	PARN	91	79.661	ENSXMAG00000014783	parn	84	73.064	Xiphophorus_maculatus