EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000008172 (Gene tree)
Gene ID: 454128
Gene Symbol: USB1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 23467 bases
Position: chr16:48689897-48713363
Accession: 9399
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000013956	HVSL	PF09749.9	6.5e-61	1	1
ENSPTRP00000087910	HVSL	PF09749.9	1.5e-51	1	2
ENSPTRP00000087910	HVSL	PF09749.9	1.5e-51	2	2
ENSPTRP00000091714	HVSL	PF09749.9	1.6e-28	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000109128	-	3661	XM_016929941	ENSPTRP00000091714	186 (aa)	XP_016785430	A0A2I3TR34
ENSPTRT00000015070	-	2935	XM_009430884	ENSPTRP00000013956	214 (aa)	XP_009429159	H2QB80
ENSPTRT00000077968	-	2879	XM_003315118	ENSPTRP00000087910	247 (aa)	XP_003315166	K7BF71

Gene Model

Click here to download ENSPTRG00000008172's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000008172's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000008172	USB1	100	99.065	ENSG00000103005	USB1	100	99.065	Homo_sapiens
ENSPTRG00000008172	USB1	100	52.804	ENSAPOG00000011942	usb1	79	52.632	Acanthochromis_polyacanthus
ENSPTRG00000008172	USB1	100	87.383	ENSAMEG00000017205	USB1	100	75.465	Ailuropoda_melanoleuca
ENSPTRG00000008172	USB1	100	54.673	ENSACIG00000012234	usb1	79	54.673	Amphilophus_citrinellus
ENSPTRG00000008172	USB1	100	54.673	ENSAOCG00000014831	usb1	76	54.673	Amphiprion_ocellaris
ENSPTRG00000008172	USB1	100	55.140	ENSAPEG00000000296	usb1	76	55.140	Amphiprion_percula
ENSPTRG00000008172	USB1	100	54.206	ENSATEG00000009348	usb1	81	49.345	Anabas_testudineus
ENSPTRG00000008172	USB1	95	72.059	ENSAPLG00000002756	USB1	100	64.159	Anas_platyrhynchos
ENSPTRG00000008172	USB1	98	65.550	ENSACAG00000015481	USB1	100	58.952	Anolis_carolinensis
ENSPTRG00000008172	USB1	100	95.794	ENSANAG00000035640	USB1	100	94.737	Aotus_nancymaae
ENSPTRG00000008172	USB1	100	54.206	ENSACLG00000020586	usb1	76	54.206	Astatotilapia_calliptera
ENSPTRG00000008172	USB1	99	52.113	ENSAMXG00000040146	usb1	74	49.327	Astyanax_mexicanus
ENSPTRG00000008172	USB1	100	86.449	ENSBTAG00000015758	USB1	100	78.113	Bos_taurus
ENSPTRG00000008172	USB1	100	96.729	ENSCJAG00000011733	USB1	100	90.769	Callithrix_jacchus
ENSPTRG00000008172	USB1	99	87.793	ENSCAFG00000008556	USB1	73	73.162	Canis_familiaris
ENSPTRG00000008172	USB1	99	87.793	ENSCAFG00020009263	USB1	99	72.894	Canis_lupus_dingo
ENSPTRG00000008172	USB1	100	85.047	ENSCHIG00000024290	USB1	100	78.682	Capra_hircus
ENSPTRG00000008172	USB1	100	92.523	ENSTSYG00000006997	USB1	100	89.474	Carlito_syrichta
ENSPTRG00000008172	USB1	100	71.028	ENSCAPG00000009057	USB1	100	72.897	Cavia_aperea
ENSPTRG00000008172	USB1	100	86.916	ENSCPOG00000014325	USB1	100	76.866	Cavia_porcellus
ENSPTRG00000008172	USB1	100	97.196	ENSCCAG00000022132	USB1	100	95.951	Cebus_capucinus
ENSPTRG00000008172	USB1	100	97.664	ENSCATG00000032174	USB1	100	95.547	Cercocebus_atys
ENSPTRG00000008172	USB1	82	86.932	ENSCLAG00000007363	USB1	100	86.932	Chinchilla_lanigera
ENSPTRG00000008172	USB1	100	97.664	ENSCSAG00000004783	USB1	100	89.811	Chlorocebus_sabaeus
ENSPTRG00000008172	USB1	100	67.757	ENSCPBG00000026943	USB1	100	56.115	Chrysemys_picta_bellii
ENSPTRG00000008172	USB1	98	30.531	ENSCING00000011490	-	82	30.531	Ciona_intestinalis
ENSPTRG00000008172	USB1	93	30.918	ENSCSAVG00000000894	-	74	30.918	Ciona_savignyi
ENSPTRG00000008172	USB1	100	98.131	ENSCANG00000037135	USB1	100	95.547	Colobus_angolensis_palliatus
ENSPTRG00000008172	USB1	100	88.785	ENSCGRG00001011243	USB1	100	76.493	Cricetulus_griseus_chok1gshd
ENSPTRG00000008172	USB1	100	88.785	ENSCGRG00000013252	USB1	100	76.493	Cricetulus_griseus_crigri
ENSPTRG00000008172	USB1	100	51.869	ENSCSEG00000013881	usb1	84	46.781	Cynoglossus_semilaevis
ENSPTRG00000008172	USB1	95	52.451	ENSCVAG00000009252	usb1	97	47.368	Cyprinodon_variegatus
ENSPTRG00000008172	USB1	100	50.935	ENSDARG00000003841	usb1	78	50.935	Danio_rerio
ENSPTRG00000008172	USB1	100	87.383	ENSDORG00000001888	Usb1	100	76.226	Dipodomys_ordii
ENSPTRG00000008172	USB1	95	40.000	FBgn0037713	CG16790	78	40.000	Drosophila_melanogaster
ENSPTRG00000008172	USB1	100	71.028	ENSETEG00000019682	USB1	100	64.045	Echinops_telfairi
ENSPTRG00000008172	USB1	99	50.704	ENSEBUG00000005889	usb1	74	50.704	Eptatretus_burgeri
ENSPTRG00000008172	USB1	100	89.252	ENSEASG00005005484	USB1	100	79.623	Equus_asinus_asinus
ENSPTRG00000008172	USB1	100	89.720	ENSECAG00000019493	USB1	91	79.623	Equus_caballus
ENSPTRG00000008172	USB1	82	77.841	ENSEEUG00000000154	USB1	66	77.841	Erinaceus_europaeus
ENSPTRG00000008172	USB1	100	49.302	ENSELUG00000010974	usb1	84	46.930	Esox_lucius
ENSPTRG00000008172	USB1	100	89.720	ENSFCAG00000002693	USB1	100	84.337	Felis_catus
ENSPTRG00000008172	USB1	99	68.868	ENSFALG00000006876	USB1	99	57.196	Ficedula_albicollis
ENSPTRG00000008172	USB1	100	88.785	ENSFDAG00000010052	USB1	100	78.277	Fukomys_damarensis
ENSPTRG00000008172	USB1	79	55.294	ENSFHEG00000012334	usb1	73	54.098	Fundulus_heteroclitus
ENSPTRG00000008172	USB1	100	51.869	ENSGMOG00000004228	usb1	99	48.430	Gadus_morhua
ENSPTRG00000008172	USB1	95	70.098	ENSGALG00000035604	USB1	89	61.947	Gallus_gallus
ENSPTRG00000008172	USB1	100	53.488	ENSGAFG00000021890	usb1	82	49.123	Gambusia_affinis
ENSPTRG00000008172	USB1	100	53.271	ENSGACG00000003257	usb1	77	53.271	Gasterosteus_aculeatus
ENSPTRG00000008172	USB1	100	66.355	ENSGAGG00000022572	USB1	100	56.777	Gopherus_agassizii
ENSPTRG00000008172	USB1	100	99.065	ENSGGOG00000017147	USB1	100	98.381	Gorilla_gorilla
ENSPTRG00000008172	USB1	100	54.673	ENSHBUG00000009823	usb1	81	50.661	Haplochromis_burtoni
ENSPTRG00000008172	USB1	100	88.318	ENSHGLG00000016078	USB1	98	78.652	Heterocephalus_glaber_female
ENSPTRG00000008172	USB1	100	88.318	ENSHGLG00100005562	USB1	98	78.652	Heterocephalus_glaber_male
ENSPTRG00000008172	USB1	99	55.869	ENSHCOG00000015633	usb1	82	55.869	Hippocampus_comes
ENSPTRG00000008172	USB1	100	55.140	ENSIPUG00000008601	usb1	74	55.140	Ictalurus_punctatus
ENSPTRG00000008172	USB1	100	88.785	ENSSTOG00000007548	USB1	100	75.458	Ictidomys_tridecemlineatus
ENSPTRG00000008172	USB1	100	89.252	ENSJJAG00000021859	Usb1	100	78.652	Jaculus_jaculus
ENSPTRG00000008172	USB1	100	53.738	ENSKMAG00000007200	usb1	80	48.899	Kryptolebias_marmoratus
ENSPTRG00000008172	USB1	88	52.910	ENSLBEG00000008452	usb1	61	53.889	Labrus_bergylta
ENSPTRG00000008172	USB1	86	60.428	ENSLACG00000000105	USB1	67	59.487	Latimeria_chalumnae
ENSPTRG00000008172	USB1	100	55.607	ENSLOCG00000000465	usb1	82	51.739	Lepisosteus_oculatus
ENSPTRG00000008172	USB1	100	66.822	ENSLAFG00000002267	USB1	100	58.736	Loxodonta_africana
ENSPTRG00000008172	USB1	100	97.664	ENSMFAG00000003926	USB1	100	95.951	Macaca_fascicularis
ENSPTRG00000008172	USB1	100	97.664	ENSMMUG00000022669	USB1	100	95.951	Macaca_mulatta
ENSPTRG00000008172	USB1	100	97.196	ENSMNEG00000042487	USB1	100	95.547	Macaca_nemestrina
ENSPTRG00000008172	USB1	100	97.664	ENSMLEG00000028756	USB1	100	95.951	Mandrillus_leucophaeus
ENSPTRG00000008172	USB1	100	54.206	ENSMAMG00000015092	usb1	83	48.927	Mastacembelus_armatus
ENSPTRG00000008172	USB1	100	54.206	ENSMZEG00005010008	usb1	76	54.206	Maylandia_zebra
ENSPTRG00000008172	USB1	100	88.318	ENSMAUG00000007832	Usb1	100	77.528	Mesocricetus_auratus
ENSPTRG00000008172	USB1	100	91.121	ENSMICG00000004900	USB1	100	89.474	Microcebus_murinus
ENSPTRG00000008172	USB1	100	86.916	ENSMOCG00000022647	Usb1	100	76.030	Microtus_ochrogaster
ENSPTRG00000008172	USB1	100	54.206	ENSMMOG00000000490	usb1	83	54.206	Mola_mola
ENSPTRG00000008172	USB1	100	73.832	ENSMODG00000014067	USB1	100	61.194	Monodelphis_domestica
ENSPTRG00000008172	USB1	100	53.271	ENSMALG00000005930	usb1	80	49.780	Monopterus_albus
ENSPTRG00000008172	USB1	100	84.579	MGP_CAROLIEiJ_G0031421	Usb1	100	82.301	Mus_caroli
ENSPTRG00000008172	USB1	100	85.047	ENSMUSG00000031792	Usb1	100	83.186	Mus_musculus
ENSPTRG00000008172	USB1	100	85.047	MGP_PahariEiJ_G0023019	Usb1	100	83.761	Mus_pahari
ENSPTRG00000008172	USB1	100	84.112	MGP_SPRETEiJ_G0032540	Usb1	100	73.034	Mus_spretus
ENSPTRG00000008172	USB1	100	84.579	ENSMPUG00000004684	USB1	96	74.349	Mustela_putorius_furo
ENSPTRG00000008172	USB1	100	88.318	ENSMLUG00000007400	USB1	100	81.385	Myotis_lucifugus
ENSPTRG00000008172	USB1	100	89.720	ENSNGAG00000009703	Usb1	100	76.208	Nannospalax_galili
ENSPTRG00000008172	USB1	100	52.804	ENSNBRG00000008747	usb1	99	53.465	Neolamprologus_brichardi
ENSPTRG00000008172	USB1	100	98.387	ENSNLEG00000003340	USB1	100	98.387	Nomascus_leucogenys
ENSPTRG00000008172	USB1	80	58.333	ENSMEUG00000003328	-	100	57.692	Notamacropus_eugenii
ENSPTRG00000008172	USB1	70	87.879	ENSOPRG00000011803	USB1	66	87.879	Ochotona_princeps
ENSPTRG00000008172	USB1	100	85.981	ENSODEG00000016214	USB1	100	75.281	Octodon_degus
ENSPTRG00000008172	USB1	100	54.206	ENSONIG00000011063	usb1	81	50.220	Oreochromis_niloticus
ENSPTRG00000008172	USB1	97	74.519	ENSOANG00000012118	USB1	94	68.444	Ornithorhynchus_anatinus
ENSPTRG00000008172	USB1	100	52.336	ENSORLG00000012479	usb1	83	47.807	Oryzias_latipes
ENSPTRG00000008172	USB1	100	52.336	ENSORLG00020018671	usb1	99	45.185	Oryzias_latipes_hni
ENSPTRG00000008172	USB1	100	52.804	ENSORLG00015009679	usb1	93	44.664	Oryzias_latipes_hsok
ENSPTRG00000008172	USB1	100	51.869	ENSOMEG00000012930	usb1	82	47.368	Oryzias_melastigma
ENSPTRG00000008172	USB1	100	88.664	ENSOGAG00000003273	USB1	100	88.664	Otolemur_garnettii
ENSPTRG00000008172	USB1	100	85.981	ENSOARG00000001107	USB1	93	76.955	Ovis_aries
ENSPTRG00000008172	USB1	100	99.533	ENSPPAG00000042137	USB1	100	98.785	Pan_paniscus
ENSPTRG00000008172	USB1	100	89.720	ENSPPRG00000024797	USB1	100	84.337	Panthera_pardus
ENSPTRG00000008172	USB1	100	89.252	ENSPTIG00000007506	USB1	100	84.337	Panthera_tigris_altaica
ENSPTRG00000008172	USB1	100	97.664	ENSPANG00000025138	USB1	100	95.951	Papio_anubis
ENSPTRG00000008172	USB1	99	55.399	ENSPKIG00000015109	usb1	72	55.399	Paramormyrops_kingsleyae
ENSPTRG00000008172	USB1	100	51.852	ENSPSIG00000004305	USB1	100	52.915	Pelodiscus_sinensis
ENSPTRG00000008172	USB1	99	51.643	ENSPMGG00000017725	usb1	82	51.643	Periophthalmus_magnuspinnatus
ENSPTRG00000008172	USB1	100	86.916	ENSPEMG00000016183	Usb1	100	72.426	Peromyscus_maniculatus_bairdii
ENSPTRG00000008172	USB1	100	50.926	ENSPMAG00000000462	usb1	100	45.148	Petromyzon_marinus
ENSPTRG00000008172	USB1	98	53.589	ENSPFOG00000011130	usb1	82	48.684	Poecilia_formosa
ENSPTRG00000008172	USB1	100	53.023	ENSPLAG00000009820	usb1	82	48.684	Poecilia_latipinna
ENSPTRG00000008172	USB1	98	53.589	ENSPMEG00000006402	usb1	82	48.684	Poecilia_mexicana
ENSPTRG00000008172	USB1	79	55.882	ENSPREG00000001047	usb1	74	54.645	Poecilia_reticulata
ENSPTRG00000008172	USB1	93	93.532	ENSPPYG00000007401	USB1	100	86.905	Pongo_abelii
ENSPTRG00000008172	USB1	100	92.523	ENSPCOG00000022612	USB1	100	90.283	Propithecus_coquereli
ENSPTRG00000008172	USB1	100	84.112	ENSPVAG00000004613	USB1	100	73.962	Pteropus_vampyrus
ENSPTRG00000008172	USB1	100	54.673	ENSPNYG00000022262	usb1	79	55.024	Pundamilia_nyererei
ENSPTRG00000008172	USB1	100	51.402	ENSPNAG00000011736	usb1	76	49.554	Pygocentrus_nattereri
ENSPTRG00000008172	USB1	100	85.514	ENSRNOG00000013216	Usb1	100	76.030	Rattus_norvegicus
ENSPTRG00000008172	USB1	100	98.131	ENSRBIG00000044466	USB1	100	98.131	Rhinopithecus_bieti
ENSPTRG00000008172	USB1	100	98.131	ENSRROG00000029211	USB1	100	96.356	Rhinopithecus_roxellana
ENSPTRG00000008172	USB1	100	96.729	ENSSBOG00000029362	USB1	100	93.927	Saimiri_boliviensis_boliviensis
ENSPTRG00000008172	USB1	100	72.430	ENSSHAG00000006993	USB1	94	64.135	Sarcophilus_harrisii
ENSPTRG00000008172	USB1	99	57.277	ENSSFOG00015023663	usb1	76	50.413	Scleropages_formosus
ENSPTRG00000008172	USB1	100	52.193	ENSSMAG00000015834	usb1	83	47.773	Scophthalmus_maximus
ENSPTRG00000008172	USB1	100	55.607	ENSSDUG00000002949	usb1	79	55.607	Seriola_dumerili
ENSPTRG00000008172	USB1	100	55.607	ENSSLDG00000014174	usb1	76	55.607	Seriola_lalandi_dorsalis
ENSPTRG00000008172	USB1	100	68.692	ENSSPUG00000006741	USB1	100	68.692	Sphenodon_punctatus
ENSPTRG00000008172	USB1	100	52.336	ENSSPAG00000007484	usb1	80	48.899	Stegastes_partitus
ENSPTRG00000008172	USB1	100	88.785	ENSSSCG00000002807	USB1	100	75.465	Sus_scrofa
ENSPTRG00000008172	USB1	99	69.811	ENSTGUG00000004792	USB1	83	69.811	Taeniopygia_guttata
ENSPTRG00000008172	USB1	100	52.336	ENSTRUG00000021069	usb1	84	48.246	Takifugu_rubripes
ENSPTRG00000008172	USB1	100	48.598	ENSTNIG00000000626	usb1	83	46.429	Tetraodon_nigroviridis
ENSPTRG00000008172	USB1	100	59.813	ENSTBEG00000001507	USB1	100	54.741	Tupaia_belangeri
ENSPTRG00000008172	USB1	100	86.916	ENSUAMG00000016823	USB1	100	76.208	Ursus_americanus
ENSPTRG00000008172	USB1	100	86.916	ENSUMAG00000021369	USB1	100	86.916	Ursus_maritimus
ENSPTRG00000008172	USB1	56	85.833	ENSVPAG00000009834	-	59	85.833	Vicugna_pacos
ENSPTRG00000008172	USB1	99	88.263	ENSVVUG00000023700	USB1	82	88.263	Vulpes_vulpes
ENSPTRG00000008172	USB1	95	57.635	ENSXETG00000013795	usb1	94	49.576	Xenopus_tropicalis
ENSPTRG00000008172	USB1	100	53.488	ENSXMAG00000024687	usb1	63	53.488	Xiphophorus_maculatus