EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000008544 (Gene tree)
Gene ID: 454417
Gene Symbol: SMG6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 248150 bases
Position: chr17:2099849-2347998
Accession: 9636
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000014583	EST1	PF10374.9	1.1e-14	1	1
ENSPTRP00000014583	EST1_DNA_bind	PF10373.9	2.8e-60	1	1
ENSPTRP00000073413	EST1_DNA_bind	PF10373.9	8.9e-18	1	1
ENSPTRP00000073413	PIN_4	PF13638.6	1.6e-21	1	1
ENSPTRP00000014583	PIN_4	PF13638.6	1.6e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000083339	-	3528	XM_009431570	ENSPTRP00000073413	511 (aa)	XP_009429845	A0A2J8JKX4
ENSPTRT00000015761	-	5949	XM_003315290	ENSPTRP00000014583	1419 (aa)	XP_003315338	H2QBV1

Gene Model

Click here to download ENSPTRG00000008544's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000008544's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000008544	SMG6	100	100.000	ENSG00000070366	SMG6	100	100.000	Homo_sapiens
ENSPTRG00000008544	SMG6	100	58.135	ENSAPOG00000019448	smg6	74	55.070	Acanthochromis_polyacanthus
ENSPTRG00000008544	SMG6	100	97.260	ENSAMEG00000007632	SMG6	100	93.517	Ailuropoda_melanoleuca
ENSPTRG00000008544	SMG6	100	60.526	ENSACIG00000012997	smg6	78	55.413	Amphilophus_citrinellus
ENSPTRG00000008544	SMG6	100	57.770	ENSAOCG00000002630	smg6	74	55.156	Amphiprion_ocellaris
ENSPTRG00000008544	SMG6	100	57.770	ENSAPEG00000019101	smg6	74	55.312	Amphiprion_percula
ENSPTRG00000008544	SMG6	100	58.684	ENSATEG00000006483	smg6	73	55.074	Anabas_testudineus
ENSPTRG00000008544	SMG6	87	57.795	ENSACAG00000011783	SMG6	99	58.694	Anolis_carolinensis
ENSPTRG00000008544	SMG6	100	98.434	ENSANAG00000035760	SMG6	100	96.124	Aotus_nancymaae
ENSPTRG00000008544	SMG6	100	58.640	ENSACLG00000005288	smg6	86	53.043	Astatotilapia_calliptera
ENSPTRG00000008544	SMG6	100	62.405	ENSAMXG00000017326	smg6	99	50.446	Astyanax_mexicanus
ENSPTRG00000008544	SMG6	100	96.869	ENSBTAG00000000267	SMG6	100	93.023	Bos_taurus
ENSPTRG00000008544	SMG6	100	98.239	ENSCJAG00000001820	SMG6	100	95.772	Callithrix_jacchus
ENSPTRG00000008544	SMG6	100	97.065	ENSCAFG00000019260	SMG6	100	93.587	Canis_familiaris
ENSPTRG00000008544	SMG6	100	97.065	ENSCAFG00020009770	SMG6	100	93.587	Canis_lupus_dingo
ENSPTRG00000008544	SMG6	100	97.260	ENSCHIG00000021998	SMG6	100	92.953	Capra_hircus
ENSPTRG00000008544	SMG6	100	97.456	ENSTSYG00000003406	SMG6	100	97.456	Carlito_syrichta
ENSPTRG00000008544	SMG6	98	77.482	ENSCAPG00000016197	SMG6	99	82.904	Cavia_aperea
ENSPTRG00000008544	SMG6	100	97.065	ENSCPOG00000014878	SMG6	100	91.197	Cavia_porcellus
ENSPTRG00000008544	SMG6	100	98.434	ENSCCAG00000035801	SMG6	100	96.265	Cebus_capucinus
ENSPTRG00000008544	SMG6	100	98.630	ENSCATG00000031956	SMG6	100	97.604	Cercocebus_atys
ENSPTRG00000008544	SMG6	100	97.456	ENSCLAG00000006748	SMG6	100	92.812	Chinchilla_lanigera
ENSPTRG00000008544	SMG6	100	99.413	ENSCSAG00000013800	SMG6	100	98.097	Chlorocebus_sabaeus
ENSPTRG00000008544	SMG6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
ENSPTRG00000008544	SMG6	100	82.192	ENSCPBG00000020369	SMG6	100	72.759	Chrysemys_picta_bellii
ENSPTRG00000008544	SMG6	99	34.951	ENSCING00000010099	-	99	35.305	Ciona_intestinalis
ENSPTRG00000008544	SMG6	54	37.456	ENSCSAVG00000007638	-	99	37.943	Ciona_savignyi
ENSPTRG00000008544	SMG6	100	99.217	ENSCANG00000031764	SMG6	100	99.217	Colobus_angolensis_palliatus
ENSPTRG00000008544	SMG6	55	87.724	ENSCGRG00001019595	Smg6	98	87.724	Cricetulus_griseus_chok1gshd
ENSPTRG00000008544	SMG6	98	85.014	ENSCGRG00000007782	Smg6	100	85.159	Cricetulus_griseus_crigri
ENSPTRG00000008544	SMG6	100	61.017	ENSCSEG00000012757	smg6	93	52.132	Cynoglossus_semilaevis
ENSPTRG00000008544	SMG6	100	57.559	ENSCVAG00000012789	smg6	74	53.563	Cyprinodon_variegatus
ENSPTRG00000008544	SMG6	100	61.654	ENSDARG00000100481	smg6	90	56.431	Danio_rerio
ENSPTRG00000008544	SMG6	100	97.065	ENSDNOG00000048283	SMG6	100	92.671	Dasypus_novemcinctus
ENSPTRG00000008544	SMG6	100	98.434	ENSDORG00000016614	Smg6	94	98.198	Dipodomys_ordii
ENSPTRG00000008544	SMG6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
ENSPTRG00000008544	SMG6	99	55.307	ENSEBUG00000005059	smg6	66	49.612	Eptatretus_burgeri
ENSPTRG00000008544	SMG6	99	98.232	ENSEASG00005009318	SMG6	99	94.213	Equus_asinus_asinus
ENSPTRG00000008544	SMG6	99	98.035	ENSECAG00000006519	SMG6	99	93.931	Equus_caballus
ENSPTRG00000008544	SMG6	99	85.294	ENSEEUG00000003493	SMG6	100	82.311	Erinaceus_europaeus
ENSPTRG00000008544	SMG6	100	61.654	ENSELUG00000005934	smg6	69	55.394	Esox_lucius
ENSPTRG00000008544	SMG6	100	98.043	ENSFCAG00000028817	SMG6	100	94.715	Felis_catus
ENSPTRG00000008544	SMG6	100	83.366	ENSFALG00000006538	SMG6	100	71.815	Ficedula_albicollis
ENSPTRG00000008544	SMG6	100	97.065	ENSFDAG00000015106	SMG6	100	92.459	Fukomys_damarensis
ENSPTRG00000008544	SMG6	100	56.307	ENSFHEG00000013282	smg6	75	53.390	Fundulus_heteroclitus
ENSPTRG00000008544	SMG6	100	52.852	ENSGMOG00000019077	smg6	68	69.626	Gadus_morhua
ENSPTRG00000008544	SMG6	100	83.398	ENSGALG00000003108	SMG6	98	71.478	Gallus_gallus
ENSPTRG00000008544	SMG6	100	57.299	ENSGAFG00000000379	smg6	74	54.062	Gambusia_affinis
ENSPTRG00000008544	SMG6	100	59.659	ENSGACG00000020521	smg6	100	53.669	Gasterosteus_aculeatus
ENSPTRG00000008544	SMG6	100	82.387	ENSGAGG00000025617	SMG6	100	72.353	Gopherus_agassizii
ENSPTRG00000008544	SMG6	100	99.804	ENSGGOG00000017156	SMG6	100	99.295	Gorilla_gorilla
ENSPTRG00000008544	SMG6	100	58.640	ENSHBUG00000021311	smg6	74	55.634	Haplochromis_burtoni
ENSPTRG00000008544	SMG6	100	97.456	ENSHGLG00000012882	SMG6	100	92.048	Heterocephalus_glaber_female
ENSPTRG00000008544	SMG6	100	97.456	ENSHGLG00100017815	SMG6	100	92.118	Heterocephalus_glaber_male
ENSPTRG00000008544	SMG6	100	59.134	ENSHCOG00000008761	smg6	83	59.104	Hippocampus_comes
ENSPTRG00000008544	SMG6	100	61.860	ENSIPUG00000012493	smg6	75	54.503	Ictalurus_punctatus
ENSPTRG00000008544	SMG6	100	98.630	ENSSTOG00000028127	SMG6	100	94.292	Ictidomys_tridecemlineatus
ENSPTRG00000008544	SMG6	79	89.384	ENSJJAG00000015367	Smg6	95	87.435	Jaculus_jaculus
ENSPTRG00000008544	SMG6	100	59.273	ENSKMAG00000000279	smg6	75	54.617	Kryptolebias_marmoratus
ENSPTRG00000008544	SMG6	100	56.569	ENSLBEG00000002184	smg6	76	53.323	Labrus_bergylta
ENSPTRG00000008544	SMG6	55	58.608	ENSLACG00000000806	-	98	59.219	Latimeria_chalumnae
ENSPTRG00000008544	SMG6	91	80.000	ENSLACG00000003276	SMG6	100	80.000	Latimeria_chalumnae
ENSPTRG00000008544	SMG6	100	67.823	ENSLOCG00000006448	smg6	100	54.955	Lepisosteus_oculatus
ENSPTRG00000008544	SMG6	100	97.260	ENSLAFG00000001261	SMG6	100	93.023	Loxodonta_africana
ENSPTRG00000008544	SMG6	100	99.217	ENSMFAG00000003394	SMG6	100	98.027	Macaca_fascicularis
ENSPTRG00000008544	SMG6	100	99.217	ENSMMUG00000023161	SMG6	100	97.956	Macaca_mulatta
ENSPTRG00000008544	SMG6	100	99.217	ENSMNEG00000044592	SMG6	100	92.832	Macaca_nemestrina
ENSPTRG00000008544	SMG6	100	99.217	ENSMLEG00000029353	SMG6	99	95.530	Mandrillus_leucophaeus
ENSPTRG00000008544	SMG6	100	59.347	ENSMAMG00000020119	smg6	98	49.742	Mastacembelus_armatus
ENSPTRG00000008544	SMG6	100	58.640	ENSMZEG00005024736	smg6	80	53.236	Maylandia_zebra
ENSPTRG00000008544	SMG6	72	85.014	ENSMGAG00000017200	-	100	85.014	Meleagris_gallopavo
ENSPTRG00000008544	SMG6	73	65.941	ENSMGAG00000005401	-	99	65.941	Meleagris_gallopavo
ENSPTRG00000008544	SMG6	100	98.434	ENSMICG00000012913	SMG6	100	95.490	Microcebus_murinus
ENSPTRG00000008544	SMG6	100	60.646	ENSMMOG00000010883	smg6	100	49.048	Mola_mola
ENSPTRG00000008544	SMG6	87	52.361	ENSMODG00000024395	-	98	52.790	Monodelphis_domestica
ENSPTRG00000008544	SMG6	100	95.108	ENSMODG00000010622	SMG6	100	86.076	Monodelphis_domestica
ENSPTRG00000008544	SMG6	99	41.683	ENSMODG00000024410	-	99	41.683	Monodelphis_domestica
ENSPTRG00000008544	SMG6	99	41.683	ENSMODG00000024463	-	99	42.074	Monodelphis_domestica
ENSPTRG00000008544	SMG6	99	41.487	ENSMODG00000024460	-	99	41.879	Monodelphis_domestica
ENSPTRG00000008544	SMG6	100	57.664	ENSMALG00000001106	smg6	73	54.903	Monopterus_albus
ENSPTRG00000008544	SMG6	100	97.652	MGP_CAROLIEiJ_G0016729	Smg6	100	91.543	Mus_caroli
ENSPTRG00000008544	SMG6	100	97.652	ENSMUSG00000038290	Smg6	100	91.332	Mus_musculus
ENSPTRG00000008544	SMG6	100	97.456	MGP_PahariEiJ_G0017866	Smg6	100	90.980	Mus_pahari
ENSPTRG00000008544	SMG6	100	97.652	MGP_SPRETEiJ_G0017572	Smg6	100	91.332	Mus_spretus
ENSPTRG00000008544	SMG6	100	97.260	ENSMPUG00000013046	SMG6	100	93.658	Mustela_putorius_furo
ENSPTRG00000008544	SMG6	100	97.652	ENSMLUG00000005739	SMG6	100	93.094	Myotis_lucifugus
ENSPTRG00000008544	SMG6	100	96.477	ENSNGAG00000007287	Smg6	100	91.001	Nannospalax_galili
ENSPTRG00000008544	SMG6	100	58.659	ENSNBRG00000009511	smg6	87	52.620	Neolamprologus_brichardi
ENSPTRG00000008544	SMG6	100	99.804	ENSNLEG00000017171	SMG6	100	99.804	Nomascus_leucogenys
ENSPTRG00000008544	SMG6	100	94.129	ENSMEUG00000015804	SMG6	100	82.112	Notamacropus_eugenii
ENSPTRG00000008544	SMG6	92	83.974	ENSOPRG00000000579	SMG6	85	97.368	Ochotona_princeps
ENSPTRG00000008544	SMG6	100	97.070	ENSODEG00000008038	SMG6	100	84.680	Octodon_degus
ENSPTRG00000008544	SMG6	100	58.824	ENSONIG00000005594	smg6	100	52.064	Oreochromis_niloticus
ENSPTRG00000008544	SMG6	59	84.333	ENSOANG00000030166	-	90	84.333	Ornithorhynchus_anatinus
ENSPTRG00000008544	SMG6	100	97.656	ENSOCUG00000013018	SMG6	100	93.737	Oryctolagus_cuniculus
ENSPTRG00000008544	SMG6	100	57.091	ENSORLG00000003317	smg6	74	54.710	Oryzias_latipes
ENSPTRG00000008544	SMG6	100	57.221	ENSORLG00020015343	smg6	74	54.396	Oryzias_latipes_hni
ENSPTRG00000008544	SMG6	100	56.727	ENSORLG00015020454	smg6	74	54.510	Oryzias_latipes_hsok
ENSPTRG00000008544	SMG6	100	56.679	ENSOMEG00000010838	smg6	75	54.016	Oryzias_melastigma
ENSPTRG00000008544	SMG6	100	98.043	ENSOGAG00000004483	SMG6	100	94.789	Otolemur_garnettii
ENSPTRG00000008544	SMG6	100	97.065	ENSOARG00000015076	SMG6	100	92.780	Ovis_aries
ENSPTRG00000008544	SMG6	100	100.000	ENSPPAG00000043296	SMG6	100	99.436	Pan_paniscus
ENSPTRG00000008544	SMG6	100	98.043	ENSPPRG00000014581	SMG6	100	94.785	Panthera_pardus
ENSPTRG00000008544	SMG6	100	98.043	ENSPTIG00000008925	SMG6	100	98.043	Panthera_tigris_altaica
ENSPTRG00000008544	SMG6	100	99.217	ENSPANG00000024588	SMG6	100	97.956	Papio_anubis
ENSPTRG00000008544	SMG6	89	70.680	ENSPSIG00000006660	SMG6	96	70.758	Pelodiscus_sinensis
ENSPTRG00000008544	SMG6	100	59.626	ENSPMGG00000000844	smg6	100	60.870	Periophthalmus_magnuspinnatus
ENSPTRG00000008544	SMG6	100	97.847	ENSPEMG00000020707	Smg6	100	92.389	Peromyscus_maniculatus_bairdii
ENSPTRG00000008544	SMG6	100	59.590	ENSPFOG00000012035	smg6	100	51.339	Poecilia_formosa
ENSPTRG00000008544	SMG6	100	57.299	ENSPLAG00000017660	smg6	74	53.961	Poecilia_latipinna
ENSPTRG00000008544	SMG6	100	57.143	ENSPMEG00000000258	smg6	74	54.275	Poecilia_mexicana
ENSPTRG00000008544	SMG6	100	57.299	ENSPREG00000010066	smg6	74	54.111	Poecilia_reticulata
ENSPTRG00000008544	SMG6	100	93.038	ENSPPYG00000007790	SMG6	100	93.038	Pongo_abelii
ENSPTRG00000008544	SMG6	100	88.302	ENSPCAG00000000552	SMG6	100	88.302	Procavia_capensis
ENSPTRG00000008544	SMG6	100	98.434	ENSPCOG00000020925	SMG6	100	95.278	Propithecus_coquereli
ENSPTRG00000008544	SMG6	100	97.065	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
ENSPTRG00000008544	SMG6	100	61.494	ENSPNYG00000024151	smg6	86	55.097	Pundamilia_nyererei
ENSPTRG00000008544	SMG6	100	62.709	ENSPNAG00000015480	smg6	87	62.877	Pygocentrus_nattereri
ENSPTRG00000008544	SMG6	100	97.456	ENSRNOG00000003041	Smg6	100	91.825	Rattus_norvegicus
ENSPTRG00000008544	SMG6	100	98.826	ENSRBIG00000024746	SMG6	100	98.027	Rhinopithecus_bieti
ENSPTRG00000008544	SMG6	100	98.826	ENSRROG00000030423	SMG6	100	98.826	Rhinopithecus_roxellana
ENSPTRG00000008544	SMG6	100	98.434	ENSSBOG00000022518	SMG6	100	94.362	Saimiri_boliviensis_boliviensis
ENSPTRG00000008544	SMG6	100	94.129	ENSSHAG00000010045	SMG6	98	85.294	Sarcophilus_harrisii
ENSPTRG00000008544	SMG6	97	40.637	ENSSHAG00000000380	-	99	39.802	Sarcophilus_harrisii
ENSPTRG00000008544	SMG6	100	63.738	ENSSFOG00015005436	smg6	75	54.492	Scleropages_formosus
ENSPTRG00000008544	SMG6	100	57.169	ENSSMAG00000019777	smg6	73	54.638	Scophthalmus_maximus
ENSPTRG00000008544	SMG6	100	58.106	ENSSDUG00000016412	smg6	79	52.723	Seriola_dumerili
ENSPTRG00000008544	SMG6	91	56.064	ENSSLDG00000020747	smg6	77	54.045	Seriola_lalandi_dorsalis
ENSPTRG00000008544	SMG6	100	81.518	ENSSPUG00000007152	SMG6	99	70.035	Sphenodon_punctatus
ENSPTRG00000008544	SMG6	100	58.059	ENSSPAG00000015633	smg6	74	54.710	Stegastes_partitus
ENSPTRG00000008544	SMG6	100	96.869	ENSSSCG00000017826	SMG6	100	92.676	Sus_scrofa
ENSPTRG00000008544	SMG6	100	84.149	ENSTGUG00000005836	SMG6	100	72.300	Taeniopygia_guttata
ENSPTRG00000008544	SMG6	100	58.835	ENSTRUG00000000358	smg6	100	48.196	Takifugu_rubripes
ENSPTRG00000008544	SMG6	100	60.037	ENSTNIG00000016164	smg6	100	50.462	Tetraodon_nigroviridis
ENSPTRG00000008544	SMG6	100	89.570	ENSTBEG00000011424	SMG6	100	89.570	Tupaia_belangeri
ENSPTRG00000008544	SMG6	100	89.824	ENSTTRG00000001175	SMG6	91	91.818	Tursiops_truncatus
ENSPTRG00000008544	SMG6	100	96.887	ENSUAMG00000025152	SMG6	100	93.732	Ursus_americanus
ENSPTRG00000008544	SMG6	100	97.456	ENSUMAG00000009306	SMG6	100	94.079	Ursus_maritimus
ENSPTRG00000008544	SMG6	85	92.593	ENSVPAG00000000225	SMG6	88	92.593	Vicugna_pacos
ENSPTRG00000008544	SMG6	100	97.065	ENSVVUG00000021727	SMG6	100	93.446	Vulpes_vulpes
ENSPTRG00000008544	SMG6	100	69.052	ENSXETG00000023799	SMG6	100	59.187	Xenopus_tropicalis
ENSPTRG00000008544	SMG6	100	60.571	ENSXCOG00000009867	smg6	74	55.104	Xiphophorus_couchianus
ENSPTRG00000008544	SMG6	100	57.482	ENSXMAG00000010321	smg6	74	54.219	Xiphophorus_maculatus