EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000008714 (Gene tree)
Gene ID: 455278
Gene Symbol: CHD3
Alias: -
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 27939 bases
Position: chr17:8172185-8200123
Accession: 9234
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000076938	ResIII	PF04851.15	3.2e-08	1	1
ENSPTRP00000091172	ResIII	PF04851.15	3.2e-08	1	1
ENSPTRP00000069492	ResIII	PF04851.15	3.3e-08	1	1
ENSPTRP00000014854	ResIII	PF04851.15	3.4e-08	1	1
ENSPTRP00000087124	ResIII	PF04851.15	3.5e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000105390	-	7323	XM_003339295	ENSPTRP00000069492	2000 (aa)	XP_003339343	A0A2I3RYT2
ENSPTRT00000109732	-	5496	-	ENSPTRP00000076938	1831 (aa)	-	A0A2I3SKD2
ENSPTRT00000077653	-	7221	XM_003315365	ENSPTRP00000091172	1966 (aa)	XP_003315413	A0A2I3TPK6
ENSPTRT00000091509	-	6156	-	ENSPTRP00000087124	2051 (aa)	-	A0A2I3TD11
ENSPTRT00000016052	-	7349	XM_009431765	ENSPTRP00000014854	2058 (aa)	XP_009430040	H2QC61

Gene Model

Click here to download ENSPTRG00000008714's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000008714's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000008714	CHD3	98	66.491	ENSPTRG00000000075	CHD5	97	68.696
ENSPTRG00000008714	CHD3	95	68.646	ENSPTRG00000004580	CHD4	96	70.337

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000008714	CHD3	100	99.903	ENSG00000170004	CHD3	100	99.903	Homo_sapiens
ENSPTRG00000008714	CHD3	86	80.208	ENSAPOG00000005614	chd3	94	80.208	Acanthochromis_polyacanthus
ENSPTRG00000008714	CHD3	74	93.583	ENSAMEG00000003025	-	100	97.507	Ailuropoda_melanoleuca
ENSPTRG00000008714	CHD3	90	75.534	ENSACIG00000019671	chd3	99	83.516	Amphilophus_citrinellus
ENSPTRG00000008714	CHD3	91	81.100	ENSAOCG00000023784	chd3	97	81.675	Amphiprion_ocellaris
ENSPTRG00000008714	CHD3	91	80.756	ENSAPEG00000006341	chd3	95	77.728	Amphiprion_percula
ENSPTRG00000008714	CHD3	91	81.315	ENSATEG00000000848	chd3	95	82.105	Anabas_testudineus
ENSPTRG00000008714	CHD3	99	82.888	ENSACAG00000004276	CHD3	96	84.879	Anolis_carolinensis
ENSPTRG00000008714	CHD3	100	96.650	ENSANAG00000034323	CHD3	99	99.574	Aotus_nancymaae
ENSPTRG00000008714	CHD3	94	78.816	ENSACLG00000009222	chd3	99	74.804	Astatotilapia_calliptera
ENSPTRG00000008714	CHD3	100	98.447	ENSBTAG00000014377	CHD3	100	98.447	Bos_taurus
ENSPTRG00000008714	CHD3	100	99.563	ENSCJAG00000014766	CHD3	100	99.563	Callithrix_jacchus
ENSPTRG00000008714	CHD3	100	98.051	ENSCAFG00000016859	CHD3	100	98.051	Canis_familiaris
ENSPTRG00000008714	CHD3	99	95.685	ENSCAFG00020007422	CHD3	100	98.636	Canis_lupus_dingo
ENSPTRG00000008714	CHD3	99	98.737	ENSCHIG00000016737	CHD3	100	98.737	Capra_hircus
ENSPTRG00000008714	CHD3	100	99.085	ENSTSYG00000035658	CHD3	100	99.085	Carlito_syrichta
ENSPTRG00000008714	CHD3	99	94.982	ENSCAPG00000014864	CHD3	99	94.982	Cavia_aperea
ENSPTRG00000008714	CHD3	99	97.491	ENSCPOG00000022653	CHD3	99	97.491	Cavia_porcellus
ENSPTRG00000008714	CHD3	100	99.563	ENSCCAG00000034792	CHD3	100	99.563	Cebus_capucinus
ENSPTRG00000008714	CHD3	100	99.746	ENSCATG00000041717	CHD3	100	99.746	Cercocebus_atys
ENSPTRG00000008714	CHD3	98	98.655	ENSCLAG00000010523	CHD3	100	98.655	Chinchilla_lanigera
ENSPTRG00000008714	CHD3	98	99.492	ENSCSAG00000011122	CHD3	100	99.492	Chlorocebus_sabaeus
ENSPTRG00000008714	CHD3	92	83.672	ENSCPBG00000011966	CHD3	99	87.687	Chrysemys_picta_bellii
ENSPTRG00000008714	CHD3	100	99.644	ENSCANG00000037641	CHD3	100	99.644	Colobus_angolensis_palliatus
ENSPTRG00000008714	CHD3	98	97.725	ENSCGRG00001011306	Chd3	100	97.725	Cricetulus_griseus_chok1gshd
ENSPTRG00000008714	CHD3	93	97.794	ENSCGRG00000007878	Chd3	99	97.794	Cricetulus_griseus_crigri
ENSPTRG00000008714	CHD3	92	79.605	ENSCSEG00000004489	chd3	99	76.156	Cynoglossus_semilaevis
ENSPTRG00000008714	CHD3	89	82.072	ENSCVAG00000007293	chd3	95	82.661	Cyprinodon_variegatus
ENSPTRG00000008714	CHD3	98	73.942	ENSDARG00000021405	chd3	99	76.587	Danio_rerio
ENSPTRG00000008714	CHD3	98	83.915	ENSDNOG00000047846	CHD3	98	83.915	Dasypus_novemcinctus
ENSPTRG00000008714	CHD3	98	98.137	ENSDORG00000010713	Chd3	100	98.137	Dipodomys_ordii
ENSPTRG00000008714	CHD3	98	90.463	ENSETEG00000017733	CHD3	100	92.216	Echinops_telfairi
ENSPTRG00000008714	CHD3	54	77.849	ENSEBUG00000008310	chd3	99	70.340	Eptatretus_burgeri
ENSPTRG00000008714	CHD3	99	95.955	ENSEASG00005019360	CHD3	100	98.909	Equus_asinus_asinus
ENSPTRG00000008714	CHD3	99	96.009	ENSECAG00000010051	CHD3	100	98.963	Equus_caballus
ENSPTRG00000008714	CHD3	92	98.305	ENSEEUG00000015205	CHD3	92	100.000	Erinaceus_europaeus
ENSPTRG00000008714	CHD3	84	90.476	ENSELUG00000019499	chd3	99	90.476	Esox_lucius
ENSPTRG00000008714	CHD3	100	98.301	ENSFCAG00000009629	CHD3	100	98.301	Felis_catus
ENSPTRG00000008714	CHD3	99	95.714	ENSFDAG00000008220	CHD3	99	96.240	Fukomys_damarensis
ENSPTRG00000008714	CHD3	89	80.305	ENSGMOG00000013599	chd3	91	80.914	Gadus_morhua
ENSPTRG00000008714	CHD3	59	77.058	ENSGAFG00000004055	chd3	99	76.581	Gambusia_affinis
ENSPTRG00000008714	CHD3	99	69.814	ENSGACG00000019275	chd3	100	70.997	Gasterosteus_aculeatus
ENSPTRG00000008714	CHD3	81	82.272	ENSGAGG00000013164	CHD3	98	87.101	Gopherus_agassizii
ENSPTRG00000008714	CHD3	100	99.800	ENSGGOG00000013496	CHD3	100	99.800	Gorilla_gorilla
ENSPTRG00000008714	CHD3	99	98.441	ENSHGLG00000012017	CHD3	100	98.441	Heterocephalus_glaber_female
ENSPTRG00000008714	CHD3	88	91.739	ENSHGLG00100013902	CHD3	99	91.739	Heterocephalus_glaber_male
ENSPTRG00000008714	CHD3	96	71.929	ENSHCOG00000010170	chd3	96	73.357	Hippocampus_comes
ENSPTRG00000008714	CHD3	92	75.593	ENSIPUG00000003271	chd3	96	80.919	Ictalurus_punctatus
ENSPTRG00000008714	CHD3	99	98.748	ENSSTOG00000025907	CHD3	100	99.120	Ictidomys_tridecemlineatus
ENSPTRG00000008714	CHD3	100	96.802	ENSJJAG00000017633	Chd3	100	97.879	Jaculus_jaculus
ENSPTRG00000008714	CHD3	87	90.047	ENSKMAG00000019292	chd3	97	75.903	Kryptolebias_marmoratus
ENSPTRG00000008714	CHD3	92	74.066	ENSLBEG00000028485	chd3	92	81.008	Labrus_bergylta
ENSPTRG00000008714	CHD3	98	72.954	ENSLACG00000008031	CHD3	99	74.374	Latimeria_chalumnae
ENSPTRG00000008714	CHD3	99	75.707	ENSLOCG00000013965	chd3	97	77.174	Lepisosteus_oculatus
ENSPTRG00000008714	CHD3	94	94.542	ENSLAFG00000000572	CHD3	100	94.542	Loxodonta_africana
ENSPTRG00000008714	CHD3	100	99.695	ENSMFAG00000020113	CHD3	100	99.695	Macaca_fascicularis
ENSPTRG00000008714	CHD3	100	97.250	ENSMMUG00000022221	CHD3	100	97.250	Macaca_mulatta
ENSPTRG00000008714	CHD3	100	99.695	ENSMNEG00000001728	CHD3	100	99.695	Macaca_nemestrina
ENSPTRG00000008714	CHD3	100	99.746	ENSMLEG00000032249	CHD3	100	99.746	Mandrillus_leucophaeus
ENSPTRG00000008714	CHD3	92	72.545	ENSMAMG00000000564	chd3	99	77.466	Mastacembelus_armatus
ENSPTRG00000008714	CHD3	99	97.174	ENSMAUG00000013873	Chd3	100	96.068	Mesocricetus_auratus
ENSPTRG00000008714	CHD3	100	99.077	ENSMICG00000008741	CHD3	100	99.077	Microcebus_murinus
ENSPTRG00000008714	CHD3	98	97.875	ENSMOCG00000004848	Chd3	100	97.875	Microtus_ochrogaster
ENSPTRG00000008714	CHD3	98	72.872	ENSMMOG00000012699	chd3	99	74.041	Mola_mola
ENSPTRG00000008714	CHD3	99	90.081	ENSMODG00000007509	CHD3	100	94.722	Monodelphis_domestica
ENSPTRG00000008714	CHD3	99	96.986	MGP_CAROLIEiJ_G0016564	Chd3	100	97.614	Mus_caroli
ENSPTRG00000008714	CHD3	100	97.042	ENSMUSG00000018474	Chd3	100	97.042	Mus_musculus
ENSPTRG00000008714	CHD3	99	97.228	MGP_PahariEiJ_G0017695	Chd3	100	97.825	Mus_pahari
ENSPTRG00000008714	CHD3	100	96.993	MGP_SPRETEiJ_G0017400	Chd3	100	97.720	Mus_spretus
ENSPTRG00000008714	CHD3	93	95.222	ENSMPUG00000008861	CHD3	100	98.366	Mustela_putorius_furo
ENSPTRG00000008714	CHD3	100	97.253	ENSMLUG00000014643	-	100	97.253	Myotis_lucifugus
ENSPTRG00000008714	CHD3	99	97.431	ENSNGAG00000000773	Chd3	99	97.431	Nannospalax_galili
ENSPTRG00000008714	CHD3	92	72.680	ENSNBRG00000000636	chd3	98	76.016	Neolamprologus_brichardi
ENSPTRG00000008714	CHD3	99	95.968	ENSNLEG00000009770	CHD3	100	96.937	Nomascus_leucogenys
ENSPTRG00000008714	CHD3	86	91.078	ENSMEUG00000005852	CHD3	87	91.484	Notamacropus_eugenii
ENSPTRG00000008714	CHD3	99	94.010	ENSOPRG00000011069	CHD3	100	97.009	Ochotona_princeps
ENSPTRG00000008714	CHD3	99	97.739	ENSODEG00000017785	CHD3	100	97.739	Octodon_degus
ENSPTRG00000008714	CHD3	98	73.701	ENSONIG00000009292	chd3	100	75.000	Oreochromis_niloticus
ENSPTRG00000008714	CHD3	98	93.995	ENSOCUG00000029299	CHD3	100	93.896	Oryctolagus_cuniculus
ENSPTRG00000008714	CHD3	81	71.973	ENSORLG00000007107	chd3	93	71.911	Oryzias_latipes
ENSPTRG00000008714	CHD3	56	75.411	ENSORLG00020008387	chd3	95	73.786	Oryzias_latipes_hni
ENSPTRG00000008714	CHD3	76	76.982	ENSOMEG00000013691	chd3	99	78.308	Oryzias_melastigma
ENSPTRG00000008714	CHD3	98	98.579	ENSOGAG00000003216	CHD3	100	98.579	Otolemur_garnettii
ENSPTRG00000008714	CHD3	99	95.906	ENSOARG00000017855	CHD3	99	96.398	Ovis_aries
ENSPTRG00000008714	CHD3	100	99.075	ENSPPAG00000032886	CHD3	100	99.075	Pan_paniscus
ENSPTRG00000008714	CHD3	99	97.900	ENSPPRG00000000626	CHD3	100	98.221	Panthera_pardus
ENSPTRG00000008714	CHD3	100	99.650	ENSPANG00000023938	CHD3	100	99.650	Papio_anubis
ENSPTRG00000008714	CHD3	97	76.806	ENSPKIG00000006305	chd3	99	79.332	Paramormyrops_kingsleyae
ENSPTRG00000008714	CHD3	59	90.768	ENSPSIG00000010177	CHD3	98	91.042	Pelodiscus_sinensis
ENSPTRG00000008714	CHD3	99	97.126	ENSPEMG00000014262	Chd3	100	97.126	Peromyscus_maniculatus_bairdii
ENSPTRG00000008714	CHD3	99	93.340	ENSPCIG00000005442	CHD3	97	95.935	Phascolarctos_cinereus
ENSPTRG00000008714	CHD3	91	80.272	ENSPFOG00000012464	chd3	87	80.135	Poecilia_formosa
ENSPTRG00000008714	CHD3	89	83.534	ENSPLAG00000002887	chd3	96	83.534	Poecilia_latipinna
ENSPTRG00000008714	CHD3	53	81.374	ENSPMEG00000016725	chd3	94	73.247	Poecilia_mexicana
ENSPTRG00000008714	CHD3	91	84.502	ENSPREG00000011044	chd3	99	77.942	Poecilia_reticulata
ENSPTRG00000008714	CHD3	100	94.950	ENSPPYG00000007940	CHD3	100	94.950	Pongo_abelii
ENSPTRG00000008714	CHD3	96	98.000	ENSPCAG00000004350	CHD3	96	97.796	Procavia_capensis
ENSPTRG00000008714	CHD3	100	98.352	ENSPCOG00000020952	CHD3	100	99.075	Propithecus_coquereli
ENSPTRG00000008714	CHD3	86	98.906	ENSPVAG00000016344	CHD3	87	98.174	Pteropus_vampyrus
ENSPTRG00000008714	CHD3	94	78.585	ENSPNAG00000020393	chd3	98	81.682	Pygocentrus_nattereri
ENSPTRG00000008714	CHD3	99	93.700	ENSRNOG00000009722	Chd3	100	97.004	Rattus_norvegicus
ENSPTRG00000008714	CHD3	100	96.494	ENSRBIG00000033562	CHD3	100	96.494	Rhinopithecus_bieti
ENSPTRG00000008714	CHD3	100	99.746	ENSRROG00000029554	CHD3	100	99.746	Rhinopithecus_roxellana
ENSPTRG00000008714	CHD3	100	99.400	ENSSBOG00000020719	CHD3	100	99.400	Saimiri_boliviensis_boliviensis
ENSPTRG00000008714	CHD3	98	94.964	ENSSHAG00000014412	CHD3	100	94.964	Sarcophilus_harrisii
ENSPTRG00000008714	CHD3	94	77.919	ENSSFOG00015023123	chd3	98	75.444	Scleropages_formosus
ENSPTRG00000008714	CHD3	86	91.304	ENSSMAG00000006451	chd3	99	77.237	Scophthalmus_maximus
ENSPTRG00000008714	CHD3	54	74.925	ENSSDUG00000005792	chd3	95	73.535	Seriola_dumerili
ENSPTRG00000008714	CHD3	91	80.756	ENSSPAG00000013694	chd3	98	81.053	Stegastes_partitus
ENSPTRG00000008714	CHD3	99	98.479	ENSSSCG00000021363	CHD3	100	98.528	Sus_scrofa
ENSPTRG00000008714	CHD3	75	76.560	ENSTRUG00000014990	chd3	89	76.335	Takifugu_rubripes
ENSPTRG00000008714	CHD3	99	71.368	ENSTNIG00000012998	chd3	99	73.202	Tetraodon_nigroviridis
ENSPTRG00000008714	CHD3	68	100.000	ENSTBEG00000011454	-	71	100.000	Tupaia_belangeri
ENSPTRG00000008714	CHD3	99	100.000	ENSTTRG00000010295	CHD3	97	99.383	Tursiops_truncatus
ENSPTRG00000008714	CHD3	99	94.465	ENSUAMG00000005475	CHD3	99	97.441	Ursus_americanus
ENSPTRG00000008714	CHD3	60	100.000	ENSVPAG00000010794	-	62	100.000	Vicugna_pacos
ENSPTRG00000008714	CHD3	99	95.685	ENSVVUG00000028011	CHD3	99	98.508	Vulpes_vulpes
ENSPTRG00000008714	CHD3	99	71.338	ENSXETG00000012991	chd3	92	73.858	Xenopus_tropicalis
ENSPTRG00000008714	CHD3	50	91.429	ENSXCOG00000000809	chd3	96	83.089	Xiphophorus_couchianus
ENSPTRG00000008714	CHD3	85	82.967	ENSXMAG00000016035	chd3	99	82.967	Xiphophorus_maculatus