EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPTRG00000010721 (Gene tree)
Gene ID: 456373
Gene Symbol: UPF1
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 36354 bases
Position: chr19:19928938-19965291
Accession: 8692
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000018289	UPF1_Zn_bind	PF09416.10	1.2e-74	1	1
ENSPTRP00000069011	UPF1_Zn_bind	PF09416.10	1.2e-74	1	1
ENSPTRP00000018289	ResIII	PF04851.15	4.2e-05	1	1
ENSPTRP00000069011	ResIII	PF04851.15	4.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000094219	-	5394	XM_016935540	ENSPTRP00000069011	1129 (aa)	XP_016791029	A0A2I3RWB5
ENSPTRT00000019773	-	3366	-	ENSPTRP00000018289	1121 (aa)	-	H2QFU1

Gene Model

Click here to download ENSPTRG00000010721's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03013	RNA transport	KEGG
ptr03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000010721's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000010721	UPF1	100	100.000	ENSG00000005007	UPF1	100	100.000	Homo_sapiens
ENSPTRG00000010721	UPF1	100	92.260	ENSAPOG00000010916	-	100	92.260	Acanthochromis_polyacanthus
ENSPTRG00000010721	UPF1	100	90.949	ENSAPOG00000023773	upf1	100	91.038	Acanthochromis_polyacanthus
ENSPTRG00000010721	UPF1	100	98.756	ENSAMEG00000011474	UPF1	100	98.756	Ailuropoda_melanoleuca
ENSPTRG00000010721	UPF1	92	94.015	ENSACIG00000010985	-	100	94.112	Amphilophus_citrinellus
ENSPTRG00000010721	UPF1	100	90.780	ENSACIG00000019949	upf1	100	91.127	Amphilophus_citrinellus
ENSPTRG00000010721	UPF1	100	92.349	ENSAOCG00000006352	-	100	92.349	Amphiprion_ocellaris
ENSPTRG00000010721	UPF1	100	90.463	ENSAOCG00000018519	upf1	100	91.037	Amphiprion_ocellaris
ENSPTRG00000010721	UPF1	100	90.463	ENSAPEG00000016344	upf1	100	91.037	Amphiprion_percula
ENSPTRG00000010721	UPF1	100	92.349	ENSAPEG00000006292	-	100	92.349	Amphiprion_percula
ENSPTRG00000010721	UPF1	100	92.349	ENSATEG00000016606	-	100	92.349	Anabas_testudineus
ENSPTRG00000010721	UPF1	100	89.649	ENSATEG00000017867	upf1	100	90.439	Anabas_testudineus
ENSPTRG00000010721	UPF1	94	98.192	ENSAPLG00000009175	UPF1	99	98.192	Anas_platyrhynchos
ENSPTRG00000010721	UPF1	96	97.122	ENSANAG00000024107	UPF1	97	97.209	Aotus_nancymaae
ENSPTRG00000010721	UPF1	100	90.514	ENSACLG00000007181	upf1	100	90.861	Astatotilapia_calliptera
ENSPTRG00000010721	UPF1	100	92.253	ENSACLG00000022630	-	100	92.164	Astatotilapia_calliptera
ENSPTRG00000010721	UPF1	100	92.883	ENSAMXG00000042187	upf1	100	93.327	Astyanax_mexicanus
ENSPTRG00000010721	UPF1	100	99.204	ENSBTAG00000020922	UPF1	100	99.204	Bos_taurus
ENSPTRG00000010721	UPF1	89	50.540	WBGene00004880	smg-2	99	47.943	Caenorhabditis_elegans
ENSPTRG00000010721	UPF1	100	100.000	ENSCJAG00000019627	UPF1	100	100.000	Callithrix_jacchus
ENSPTRG00000010721	UPF1	100	99.646	ENSCAFG00000014578	UPF1	100	99.646	Canis_familiaris
ENSPTRG00000010721	UPF1	100	98.673	ENSCAFG00020012347	UPF1	100	98.673	Canis_lupus_dingo
ENSPTRG00000010721	UPF1	100	98.760	ENSCHIG00000011018	UPF1	100	98.760	Capra_hircus
ENSPTRG00000010721	UPF1	96	98.416	ENSTSYG00000008877	UPF1	99	98.416	Carlito_syrichta
ENSPTRG00000010721	UPF1	97	96.494	ENSCAPG00000005758	UPF1	95	98.764	Cavia_aperea
ENSPTRG00000010721	UPF1	100	97.150	ENSCPOG00000025463	UPF1	100	97.150	Cavia_porcellus
ENSPTRG00000010721	UPF1	100	100.000	ENSCCAG00000032175	UPF1	100	100.000	Cebus_capucinus
ENSPTRG00000010721	UPF1	95	98.411	ENSCATG00000040306	UPF1	98	98.411	Cercocebus_atys
ENSPTRG00000010721	UPF1	96	98.336	ENSCLAG00000004037	UPF1	100	99.620	Chinchilla_lanigera
ENSPTRG00000010721	UPF1	100	98.937	ENSCSAG00000005276	UPF1	100	98.937	Chlorocebus_sabaeus
ENSPTRG00000010721	UPF1	100	96.536	ENSCPBG00000012513	UPF1	100	96.536	Chrysemys_picta_bellii
ENSPTRG00000010721	UPF1	78	77.740	ENSCING00000021399	-	99	77.968	Ciona_intestinalis
ENSPTRG00000010721	UPF1	99	71.605	ENSCSAVG00000006533	-	99	71.781	Ciona_savignyi
ENSPTRG00000010721	UPF1	95	99.252	ENSCANG00000029819	UPF1	99	99.252	Colobus_angolensis_palliatus
ENSPTRG00000010721	UPF1	100	97.776	ENSCGRG00001021067	Upf1	100	97.776	Cricetulus_griseus_chok1gshd
ENSPTRG00000010721	UPF1	95	98.129	ENSCGRG00000013480	Upf1	99	98.129	Cricetulus_griseus_crigri
ENSPTRG00000010721	UPF1	100	85.943	ENSCSEG00000017239	upf1	100	86.032	Cynoglossus_semilaevis
ENSPTRG00000010721	UPF1	100	92.253	ENSCSEG00000016159	-	100	92.164	Cynoglossus_semilaevis
ENSPTRG00000010721	UPF1	100	92.171	ENSCVAG00000010561	upf1	100	92.082	Cyprinodon_variegatus
ENSPTRG00000010721	UPF1	100	92.705	ENSDARG00000016302	upf1	100	93.149	Danio_rerio
ENSPTRG00000010721	UPF1	95	95.884	ENSDORG00000009984	Upf1	96	95.884	Dipodomys_ordii
ENSPTRG00000010721	UPF1	85	70.722	FBgn0030354	Upf1	84	67.240	Drosophila_melanogaster
ENSPTRG00000010721	UPF1	55	85.161	ENSEBUG00000010069	upf1	96	85.161	Eptatretus_burgeri
ENSPTRG00000010721	UPF1	100	98.230	ENSEASG00005006549	UPF1	100	98.230	Equus_asinus_asinus
ENSPTRG00000010721	UPF1	100	98.230	ENSECAG00000010639	UPF1	100	98.230	Equus_caballus
ENSPTRG00000010721	UPF1	100	90.168	ENSELUG00000020917	upf1	100	90.434	Esox_lucius
ENSPTRG00000010721	UPF1	100	91.593	ENSELUG00000012916	-	100	91.512	Esox_lucius
ENSPTRG00000010721	UPF1	100	99.558	ENSFCAG00000009757	UPF1	100	99.558	Felis_catus
ENSPTRG00000010721	UPF1	96	95.933	ENSFALG00000009312	UPF1	99	95.780	Ficedula_albicollis
ENSPTRG00000010721	UPF1	97	97.335	ENSFDAG00000014816	UPF1	100	99.525	Fukomys_damarensis
ENSPTRG00000010721	UPF1	85	93.648	ENSFHEG00000016276	-	96	93.829	Fundulus_heteroclitus
ENSPTRG00000010721	UPF1	100	88.085	ENSFHEG00000006428	upf1	100	88.085	Fundulus_heteroclitus
ENSPTRG00000010721	UPF1	100	91.904	ENSGMOG00000007541	upf1	100	92.349	Gadus_morhua
ENSPTRG00000010721	UPF1	100	96.726	ENSGALG00000003220	UPF1	100	96.726	Gallus_gallus
ENSPTRG00000010721	UPF1	100	91.986	ENSGAFG00000004831	upf1	100	91.897	Gambusia_affinis
ENSPTRG00000010721	UPF1	63	93.901	ENSGAFG00000015443	-	88	91.621	Gambusia_affinis
ENSPTRG00000010721	UPF1	100	96.794	ENSGAGG00000022217	UPF1	100	96.794	Gopherus_agassizii
ENSPTRG00000010721	UPF1	94	98.955	ENSGGOG00000002608	UPF1	99	98.955	Gorilla_gorilla
ENSPTRG00000010721	UPF1	90	86.207	ENSHBUG00000014694	upf1	100	86.207	Haplochromis_burtoni
ENSPTRG00000010721	UPF1	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSPTRG00000010721	UPF1	100	99.114	ENSHGLG00000010900	UPF1	100	99.114	Heterocephalus_glaber_female
ENSPTRG00000010721	UPF1	96	95.753	ENSHGLG00100005904	UPF1	99	95.753	Heterocephalus_glaber_male
ENSPTRG00000010721	UPF1	100	91.273	ENSHCOG00000008918	upf1	100	92.823	Hippocampus_comes
ENSPTRG00000010721	UPF1	100	93.327	ENSIPUG00000005108	UPF1	100	93.683	Ictalurus_punctatus
ENSPTRG00000010721	UPF1	100	99.377	ENSSTOG00000009196	UPF1	100	99.377	Ictidomys_tridecemlineatus
ENSPTRG00000010721	UPF1	100	98.752	ENSJJAG00000023151	Upf1	100	98.752	Jaculus_jaculus
ENSPTRG00000010721	UPF1	100	92.438	ENSKMAG00000004962	upf1	100	92.349	Kryptolebias_marmoratus
ENSPTRG00000010721	UPF1	100	89.104	ENSLBEG00000014862	upf1	100	90.246	Labrus_bergylta
ENSPTRG00000010721	UPF1	100	92.171	ENSLBEG00000027848	-	100	92.171	Labrus_bergylta
ENSPTRG00000010721	UPF1	62	97.274	ENSLACG00000008482	UPF1	100	97.274	Latimeria_chalumnae
ENSPTRG00000010721	UPF1	100	94.746	ENSLOCG00000002072	upf1	100	94.746	Lepisosteus_oculatus
ENSPTRG00000010721	UPF1	100	98.761	ENSLAFG00000014963	UPF1	100	98.761	Loxodonta_africana
ENSPTRG00000010721	UPF1	100	100.000	ENSMFAG00000037748	UPF1	100	100.000	Macaca_fascicularis
ENSPTRG00000010721	UPF1	100	100.000	ENSMMUG00000023286	UPF1	100	100.000	Macaca_mulatta
ENSPTRG00000010721	UPF1	100	100.000	ENSMNEG00000000046	UPF1	100	100.000	Macaca_nemestrina
ENSPTRG00000010721	UPF1	94	100.000	ENSMLEG00000028404	UPF1	100	100.000	Mandrillus_leucophaeus
ENSPTRG00000010721	UPF1	100	91.548	ENSMAMG00000006231	-	100	91.993	Mastacembelus_armatus
ENSPTRG00000010721	UPF1	100	89.386	ENSMAMG00000006229	upf1	100	90.351	Mastacembelus_armatus
ENSPTRG00000010721	UPF1	100	92.253	ENSMZEG00005016386	-	100	92.164	Maylandia_zebra
ENSPTRG00000010721	UPF1	100	89.483	ENSMZEG00005003489	upf1	100	90.661	Maylandia_zebra
ENSPTRG00000010721	UPF1	94	97.719	ENSMGAG00000004745	UPF1	100	97.719	Meleagris_gallopavo
ENSPTRG00000010721	UPF1	96	97.403	ENSMAUG00000011398	Upf1	97	97.403	Mesocricetus_auratus
ENSPTRG00000010721	UPF1	100	98.583	ENSMICG00000001659	UPF1	100	98.583	Microcebus_murinus
ENSPTRG00000010721	UPF1	100	98.577	ENSMOCG00000005699	Upf1	100	98.577	Microtus_ochrogaster
ENSPTRG00000010721	UPF1	94	91.548	ENSMMOG00000007537	-	99	91.643	Mola_mola
ENSPTRG00000010721	UPF1	100	90.285	ENSMMOG00000007881	upf1	100	90.739	Mola_mola
ENSPTRG00000010721	UPF1	100	98.147	ENSMODG00000003689	UPF1	100	98.147	Monodelphis_domestica
ENSPTRG00000010721	UPF1	100	91.054	ENSMALG00000018100	-	100	91.054	Monopterus_albus
ENSPTRG00000010721	UPF1	100	90.463	ENSMALG00000000144	upf1	100	90.731	Monopterus_albus
ENSPTRG00000010721	UPF1	100	98.665	MGP_CAROLIEiJ_G0031142	Upf1	100	98.665	Mus_caroli
ENSPTRG00000010721	UPF1	100	98.665	ENSMUSG00000058301	Upf1	100	98.665	Mus_musculus
ENSPTRG00000010721	UPF1	100	98.665	MGP_PahariEiJ_G0021607	Upf1	100	98.665	Mus_pahari
ENSPTRG00000010721	UPF1	100	98.665	MGP_SPRETEiJ_G0032260	Upf1	100	98.665	Mus_spretus
ENSPTRG00000010721	UPF1	100	98.673	ENSMPUG00000015516	UPF1	100	98.673	Mustela_putorius_furo
ENSPTRG00000010721	UPF1	99	98.224	ENSMLUG00000012122	UPF1	99	98.224	Myotis_lucifugus
ENSPTRG00000010721	UPF1	100	98.671	ENSNGAG00000024107	Upf1	100	98.671	Nannospalax_galili
ENSPTRG00000010721	UPF1	100	88.830	ENSNBRG00000000670	upf1	100	89.175	Neolamprologus_brichardi
ENSPTRG00000010721	UPF1	100	89.948	ENSNBRG00000022069	-	100	92.885	Neolamprologus_brichardi
ENSPTRG00000010721	UPF1	94	94.202	ENSNLEG00000006062	UPF1	100	94.202	Nomascus_leucogenys
ENSPTRG00000010721	UPF1	83	94.314	ENSMEUG00000014146	-	83	94.314	Notamacropus_eugenii
ENSPTRG00000010721	UPF1	94	90.589	ENSOPRG00000014018	UPF1	100	90.589	Ochotona_princeps
ENSPTRG00000010721	UPF1	100	98.483	ENSODEG00000012426	UPF1	100	98.483	Octodon_degus
ENSPTRG00000010721	UPF1	100	92.342	ENSONIG00000012729	-	100	92.253	Oreochromis_niloticus
ENSPTRG00000010721	UPF1	100	89.746	ENSONIG00000010452	upf1	100	90.925	Oreochromis_niloticus
ENSPTRG00000010721	UPF1	100	97.518	ENSOANG00000004568	UPF1	100	97.518	Ornithorhynchus_anatinus
ENSPTRG00000010721	UPF1	100	92.171	ENSORLG00000008453	upf1	100	92.171	Oryzias_latipes
ENSPTRG00000010721	UPF1	100	92.000	ENSORLG00020014758	upf1	100	92.000	Oryzias_latipes_hni
ENSPTRG00000010721	UPF1	100	92.000	ENSORLG00015010165	upf1	100	92.000	Oryzias_latipes_hsok
ENSPTRG00000010721	UPF1	100	92.260	ENSOMEG00000003665	upf1	100	92.171	Oryzias_melastigma
ENSPTRG00000010721	UPF1	100	98.937	ENSOGAG00000012866	UPF1	100	98.937	Otolemur_garnettii
ENSPTRG00000010721	UPF1	96	97.240	ENSOARG00000010739	UPF1	100	97.240	Ovis_aries
ENSPTRG00000010721	UPF1	95	99.065	ENSPPAG00000043884	UPF1	97	99.065	Pan_paniscus
ENSPTRG00000010721	UPF1	100	99.558	ENSPPRG00000023470	UPF1	100	99.558	Panthera_pardus
ENSPTRG00000010721	UPF1	94	96.575	ENSPTIG00000010159	UPF1	99	96.575	Panthera_tigris_altaica
ENSPTRG00000010721	UPF1	100	100.000	ENSPANG00000008847	UPF1	100	100.000	Papio_anubis
ENSPTRG00000010721	UPF1	94	92.170	ENSPKIG00000006069	upf1	99	92.075	Paramormyrops_kingsleyae
ENSPTRG00000010721	UPF1	68	97.908	ENSPSIG00000009491	UPF1	100	97.908	Pelodiscus_sinensis
ENSPTRG00000010721	UPF1	100	88.997	ENSPMGG00000017327	upf1	100	89.105	Periophthalmus_magnuspinnatus
ENSPTRG00000010721	UPF1	100	98.754	ENSPEMG00000001085	Upf1	100	98.754	Peromyscus_maniculatus_bairdii
ENSPTRG00000010721	UPF1	100	87.344	ENSPMAG00000001206	upf1	100	86.779	Petromyzon_marinus
ENSPTRG00000010721	UPF1	100	97.699	ENSPCIG00000006156	UPF1	100	97.699	Phascolarctos_cinereus
ENSPTRG00000010721	UPF1	100	92.075	ENSPLAG00000016232	-	100	91.986	Poecilia_latipinna
ENSPTRG00000010721	UPF1	100	89.056	ENSPLAG00000018155	-	100	88.967	Poecilia_latipinna
ENSPTRG00000010721	UPF1	100	92.164	ENSPMEG00000016319	-	100	92.075	Poecilia_mexicana
ENSPTRG00000010721	UPF1	100	89.600	ENSPMEG00000011443	-	100	89.511	Poecilia_mexicana
ENSPTRG00000010721	UPF1	100	91.897	ENSPREG00000011247	-	100	91.808	Poecilia_reticulata
ENSPTRG00000010721	UPF1	100	89.497	ENSPREG00000009940	upf1	100	89.497	Poecilia_reticulata
ENSPTRG00000010721	UPF1	100	95.040	ENSPPYG00000009752	UPF1	100	95.040	Pongo_abelii
ENSPTRG00000010721	UPF1	76	100.000	ENSPCAG00000012962	UPF1	76	100.000	Procavia_capensis
ENSPTRG00000010721	UPF1	100	99.469	ENSPCOG00000023813	UPF1	100	99.469	Propithecus_coquereli
ENSPTRG00000010721	UPF1	69	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSPTRG00000010721	UPF1	100	89.483	ENSPNYG00000003694	upf1	100	90.661	Pundamilia_nyererei
ENSPTRG00000010721	UPF1	100	92.253	ENSPNYG00000016731	-	100	92.164	Pundamilia_nyererei
ENSPTRG00000010721	UPF1	100	92.883	ENSPNAG00000025614	upf1	100	93.327	Pygocentrus_nattereri
ENSPTRG00000010721	UPF1	100	98.665	ENSRNOG00000020134	Upf1	100	98.665	Rattus_norvegicus
ENSPTRG00000010721	UPF1	95	96.916	ENSRBIG00000013894	UPF1	98	98.593	Rhinopithecus_bieti
ENSPTRG00000010721	UPF1	95	99.252	ENSRROG00000040935	UPF1	99	99.252	Rhinopithecus_roxellana
ENSPTRG00000010721	UPF1	76	55.309	YMR080C	NAM7	86	55.309	Saccharomyces_cerevisiae
ENSPTRG00000010721	UPF1	96	98.329	ENSSBOG00000023632	UPF1	98	98.419	Saimiri_boliviensis_boliviensis
ENSPTRG00000010721	UPF1	94	98.860	ENSSHAG00000010499	UPF1	100	98.860	Sarcophilus_harrisii
ENSPTRG00000010721	UPF1	100	94.746	ENSSFOG00015021095	upf1	99	96.198	Scleropages_formosus
ENSPTRG00000010721	UPF1	100	88.752	ENSSMAG00000005055	upf1	100	89.552	Scophthalmus_maximus
ENSPTRG00000010721	UPF1	100	92.349	ENSSMAG00000021018	-	100	92.349	Scophthalmus_maximus
ENSPTRG00000010721	UPF1	100	89.649	ENSSDUG00000013320	upf1	100	90.614	Seriola_dumerili
ENSPTRG00000010721	UPF1	100	92.527	ENSSDUG00000009629	-	100	92.527	Seriola_dumerili
ENSPTRG00000010721	UPF1	100	92.527	ENSSLDG00000006878	-	100	92.527	Seriola_lalandi_dorsalis
ENSPTRG00000010721	UPF1	100	90.442	ENSSLDG00000020868	upf1	100	90.901	Seriola_lalandi_dorsalis
ENSPTRG00000010721	UPF1	100	96.791	ENSSPUG00000010538	UPF1	100	96.791	Sphenodon_punctatus
ENSPTRG00000010721	UPF1	100	92.520	ENSSPAG00000011521	-	100	92.431	Stegastes_partitus
ENSPTRG00000010721	UPF1	100	88.958	ENSSPAG00000000003	upf1	100	88.899	Stegastes_partitus
ENSPTRG00000010721	UPF1	100	99.115	ENSSSCG00000039301	UPF1	100	99.115	Sus_scrofa
ENSPTRG00000010721	UPF1	83	89.787	ENSTGUG00000001057	UPF1	100	95.428	Taeniopygia_guttata
ENSPTRG00000010721	UPF1	100	91.184	ENSTRUG00000005131	-	100	91.184	Takifugu_rubripes
ENSPTRG00000010721	UPF1	100	90.196	ENSTRUG00000000150	upf1	100	90.196	Takifugu_rubripes
ENSPTRG00000010721	UPF1	100	94.425	ENSTTRG00000011544	UPF1	100	94.055	Tursiops_truncatus
ENSPTRG00000010721	UPF1	100	98.584	ENSUAMG00000007093	UPF1	100	98.584	Ursus_americanus
ENSPTRG00000010721	UPF1	96	97.961	ENSUMAG00000006652	UPF1	99	98.769	Ursus_maritimus
ENSPTRG00000010721	UPF1	100	98.673	ENSVVUG00000007797	UPF1	100	98.673	Vulpes_vulpes
ENSPTRG00000010721	UPF1	100	82.379	ENSXETG00000013602	upf1	100	82.379	Xenopus_tropicalis
ENSPTRG00000010721	UPF1	97	89.411	ENSXCOG00000015275	-	96	89.319	Xiphophorus_couchianus
ENSPTRG00000010721	UPF1	93	93.858	ENSXCOG00000005764	-	100	93.858	Xiphophorus_couchianus
ENSPTRG00000010721	UPF1	100	89.671	ENSXMAG00000001703	-	100	89.581	Xiphophorus_maculatus
ENSPTRG00000010721	UPF1	100	91.986	ENSXMAG00000002540	-	100	91.897	Xiphophorus_maculatus