EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000011560 (Gene tree)
Gene ID: 456330
Gene Symbol: ZNF550
Alias: -
Full Name: zinc finger protein 550
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 26917 bases
Position: chr19:60123248-60150164
Accession: 11468
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000009623	zf-C2H2	PF00096.26	5.5e-37	1	6
ENSPTRP00000009623	zf-C2H2	PF00096.26	5.5e-37	2	6
ENSPTRP00000009623	zf-C2H2	PF00096.26	5.5e-37	3	6
ENSPTRP00000009623	zf-C2H2	PF00096.26	5.5e-37	4	6
ENSPTRP00000009623	zf-C2H2	PF00096.26	5.5e-37	5	6
ENSPTRP00000009623	zf-C2H2	PF00096.26	5.5e-37	6	6
ENSPTRP00000068336	zf-C2H2	PF00096.26	1.4e-36	1	6
ENSPTRP00000068336	zf-C2H2	PF00096.26	1.4e-36	2	6
ENSPTRP00000068336	zf-C2H2	PF00096.26	1.4e-36	3	6
ENSPTRP00000068336	zf-C2H2	PF00096.26	1.4e-36	4	6
ENSPTRP00000068336	zf-C2H2	PF00096.26	1.4e-36	5	6
ENSPTRP00000068336	zf-C2H2	PF00096.26	1.4e-36	6	6
ENSPTRP00000009623	zf-met	PF12874.7	0.00042	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000010399	-	1146	-	ENSPTRP00000009623	381 (aa)	-	H2Q783
ENSPTRT00000109120	-	4681	XM_016936959	ENSPTRP00000068336	422 (aa)	XP_016792448	A0A2J8JLS0
ENSPTRT00000081282	-	378	-	ENSPTRP00000079981	125 (aa)	-	A0A2I3SSK0

Gene Model

Click here to download ENSPTRG00000011560's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000011560's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000011560	ZNF550	60	55.652	ENSPTRG00000046972	-	74	55.652
ENSPTRG00000011560	ZNF550	99	56.571	ENSPTRG00000008354	ZFP1	98	56.571
ENSPTRG00000011560	ZNF550	99	53.304	ENSPTRG00000011105	ZNF224	99	51.982
ENSPTRG00000011560	ZNF550	99	44.776	ENSPTRG00000010903	ZNF829	92	61.500
ENSPTRG00000011560	ZNF550	60	51.982	ENSPTRG00000046318	ZNF768	53	51.982
ENSPTRG00000011560	ZNF550	99	62.555	ENSPTRG00000011539	ZNF582	93	62.555
ENSPTRG00000011560	ZNF550	99	56.710	ENSPTRG00000050020	ZNF701	99	56.710
ENSPTRG00000011560	ZNF550	99	53.982	ENSPTRG00000011427	ZNF320	99	53.982
ENSPTRG00000011560	ZNF550	60	55.652	ENSPTRG00000007686	ZNF205	74	55.652
ENSPTRG00000011560	ZNF550	98	44.493	ENSPTRG00000013344	ZNF337	98	43.721
ENSPTRG00000011560	ZNF550	99	55.952	ENSPTRG00000012207	ZNF2	96	55.952

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000011560	ZNF550	100	99.526	ENSG00000251369	ZNF550	100	99.526	Homo_sapiens
ENSPTRG00000011560	ZNF550	100	95.276	ENSCATG00000020915	ZNF550	100	95.276	Cercocebus_atys
ENSPTRG00000011560	ZNF550	100	63.802	ENSCLAG00000000250	ZNF550	95	68.800	Chinchilla_lanigera
ENSPTRG00000011560	ZNF550	98	94.189	ENSCSAG00000001629	ZNF550	100	94.189	Chlorocebus_sabaeus
ENSPTRG00000011560	ZNF550	100	94.751	ENSCANG00000033735	ZNF550	100	94.751	Colobus_angolensis_palliatus
ENSPTRG00000011560	ZNF550	89	73.021	ENSDNOG00000033330	-	99	71.229	Dasypus_novemcinctus
ENSPTRG00000011560	ZNF550	99	70.341	ENSFCAG00000034766	ZNF550	99	70.341	Felis_catus
ENSPTRG00000011560	ZNF550	100	99.052	ENSGGOG00000014068	ZNF550	100	99.052	Gorilla_gorilla
ENSPTRG00000011560	ZNF550	100	71.462	ENSHGLG00000018048	ZNF550	100	71.462	Heterocephalus_glaber_female
ENSPTRG00000011560	ZNF550	100	94.751	ENSMFAG00000036005	ZNF550	100	94.751	Macaca_fascicularis
ENSPTRG00000011560	ZNF550	100	94.488	ENSMMUG00000006122	ZNF550	100	94.488	Macaca_mulatta
ENSPTRG00000011560	ZNF550	100	94.751	ENSMNEG00000041366	ZNF550	100	94.751	Macaca_nemestrina
ENSPTRG00000011560	ZNF550	100	95.013	ENSMLEG00000034688	ZNF550	100	95.013	Mandrillus_leucophaeus
ENSPTRG00000011560	ZNF550	100	84.817	ENSMICG00000007561	ZNF550	100	84.817	Microcebus_murinus
ENSPTRG00000011560	ZNF550	99	70.079	ENSPPRG00000013475	ZNF550	99	70.079	Panthera_pardus
ENSPTRG00000011560	ZNF550	100	69.536	ENSPTIG00000018007	ZNF550	80	68.862	Panthera_tigris_altaica
ENSPTRG00000011560	ZNF550	100	94.488	ENSPANG00000030602	ZNF550	100	94.488	Papio_anubis
ENSPTRG00000011560	ZNF550	100	86.911	ENSPCOG00000018751	ZNF550	100	86.911	Propithecus_coquereli
ENSPTRG00000011560	ZNF550	99	71.259	ENSPVAG00000000908	ZNF550	100	71.496	Pteropus_vampyrus
ENSPTRG00000011560	ZNF550	100	95.801	ENSRBIG00000017275	ZNF550	100	95.801	Rhinopithecus_bieti
ENSPTRG00000011560	ZNF550	100	95.801	ENSRROG00000040063	ZNF550	100	95.801	Rhinopithecus_roxellana
ENSPTRG00000011560	ZNF550	98	80.193	ENSTTRG00000000293	ZNF550	100	80.193	Tursiops_truncatus