EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000012147 (Gene tree)
Gene ID: 459373
Gene Symbol: POLR1A
Alias: -
Full Name: RNA polymerase I subunit A
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Minus strand
Length: 83207 bases
Position: chr2A:87740646-87823852
Accession: 374
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000020836	RNA_pol_Rpb1_5	PF04998.17	1e-103	1	1
ENSPTRP00000020836	RNA_pol_Rpb1_4	PF05000.17	1.5e-25	1	1
ENSPTRP00000020836	RNA_pol_Rpb1_2	PF00623.20	8.7e-71	1	1
ENSPTRP00000020836	RNA_pol_Rpb1_3	PF04983.18	7.4e-36	1	1
ENSPTRP00000020836	RNA_pol_Rpb1_1	PF04997.12	1.8e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000022578	-	8510	XM_016948898	ENSPTRP00000020836	1720 (aa)	XP_016804387	K7CHZ0

Gene Model

Click here to download ENSPTRG00000012147's gene model file

Pathways

Pathway ID	Pathway Name	Source
ptr03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000012147's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000012147	POLR1A	62	32.684	ENSPTRG00000002664	POLR3A	70	32.684
ENSPTRG00000012147	POLR1A	85	30.769	ENSPTRG00000008691	POLR2A	61	38.806

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000012147	POLR1A	100	98.953	ENSG00000068654	POLR1A	100	98.953	Homo_sapiens
ENSPTRG00000012147	POLR1A	69	67.677	ENSAPOG00000017945	polr1a	99	67.677	Acanthochromis_polyacanthus
ENSPTRG00000012147	POLR1A	100	90.523	ENSAMEG00000005807	POLR1A	100	91.598	Ailuropoda_melanoleuca
ENSPTRG00000012147	POLR1A	100	62.869	ENSACIG00000022147	polr1a	100	62.558	Amphilophus_citrinellus
ENSPTRG00000012147	POLR1A	100	65.480	ENSAOCG00000017336	polr1a	100	67.958	Amphiprion_ocellaris
ENSPTRG00000012147	POLR1A	100	65.422	ENSAPEG00000016105	polr1a	100	65.875	Amphiprion_percula
ENSPTRG00000012147	POLR1A	100	65.916	ENSATEG00000016773	polr1a	100	66.069	Anabas_testudineus
ENSPTRG00000012147	POLR1A	86	73.103	ENSAPLG00000013871	POLR1A	99	72.200	Anas_platyrhynchos
ENSPTRG00000012147	POLR1A	99	69.884	ENSACAG00000012141	POLR1A	99	69.538	Anolis_carolinensis
ENSPTRG00000012147	POLR1A	100	94.244	ENSANAG00000033927	POLR1A	100	93.953	Aotus_nancymaae
ENSPTRG00000012147	POLR1A	100	61.982	ENSACLG00000020541	polr1a	100	61.694	Astatotilapia_calliptera
ENSPTRG00000012147	POLR1A	100	89.890	ENSBTAG00000006481	POLR1A	100	89.890	Bos_taurus
ENSPTRG00000012147	POLR1A	99	38.440	WBGene00012999	rpoa-1	98	38.212	Caenorhabditis_elegans
ENSPTRG00000012147	POLR1A	100	94.302	ENSCJAG00000019547	POLR1A	100	94.302	Callithrix_jacchus
ENSPTRG00000012147	POLR1A	100	90.656	ENSCAFG00000007613	POLR1A	100	90.075	Canis_familiaris
ENSPTRG00000012147	POLR1A	100	90.451	ENSCAFG00020014752	POLR1A	100	89.873	Canis_lupus_dingo
ENSPTRG00000012147	POLR1A	100	88.065	ENSCHIG00000018204	POLR1A	99	88.997	Capra_hircus
ENSPTRG00000012147	POLR1A	100	89.890	ENSTSYG00000002761	POLR1A	100	89.890	Carlito_syrichta
ENSPTRG00000012147	POLR1A	97	83.840	ENSCAPG00000010132	POLR1A	100	83.871	Cavia_aperea
ENSPTRG00000012147	POLR1A	100	88.095	ENSCPOG00000012350	POLR1A	100	88.328	Cavia_porcellus
ENSPTRG00000012147	POLR1A	100	94.884	ENSCCAG00000019839	POLR1A	100	94.884	Cebus_capucinus
ENSPTRG00000012147	POLR1A	100	97.384	ENSCATG00000029786	POLR1A	100	97.384	Cercocebus_atys
ENSPTRG00000012147	POLR1A	100	88.522	ENSCLAG00000005187	POLR1A	100	88.348	Chinchilla_lanigera
ENSPTRG00000012147	POLR1A	100	97.151	ENSCSAG00000016251	POLR1A	100	97.151	Chlorocebus_sabaeus
ENSPTRG00000012147	POLR1A	99	74.435	ENSCPBG00000001115	POLR1A	99	74.261	Chrysemys_picta_bellii
ENSPTRG00000012147	POLR1A	99	47.066	ENSCSAVG00000007184	-	91	54.963	Ciona_savignyi
ENSPTRG00000012147	POLR1A	100	94.015	ENSCANG00000031785	POLR1A	100	94.015	Colobus_angolensis_palliatus
ENSPTRG00000012147	POLR1A	96	89.507	ENSCGRG00001006651	Polr1a	100	89.507	Cricetulus_griseus_chok1gshd
ENSPTRG00000012147	POLR1A	60	85.742	ENSCGRG00000010834	Polr1a	100	86.957	Cricetulus_griseus_crigri
ENSPTRG00000012147	POLR1A	100	61.921	ENSCSEG00000020190	polr1a	100	61.632	Cynoglossus_semilaevis
ENSPTRG00000012147	POLR1A	100	64.380	ENSCVAG00000020941	polr1a	100	65.006	Cyprinodon_variegatus
ENSPTRG00000012147	POLR1A	100	67.034	ENSDARG00000098375	polr1a	100	66.859	Danio_rerio
ENSPTRG00000012147	POLR1A	100	82.783	ENSDNOG00000010829	POLR1A	100	82.841	Dasypus_novemcinctus
ENSPTRG00000012147	POLR1A	100	87.565	ENSDORG00000008298	Polr1a	100	87.854	Dipodomys_ordii
ENSPTRG00000012147	POLR1A	72	100.000	ENSETEG00000000412	-	72	100.000	Echinops_telfairi
ENSPTRG00000012147	POLR1A	88	66.667	ENSEBUG00000005667	-	99	66.667	Eptatretus_burgeri
ENSPTRG00000012147	POLR1A	100	91.802	ENSEASG00005001625	POLR1A	100	91.802	Equus_asinus_asinus
ENSPTRG00000012147	POLR1A	100	91.802	ENSECAG00000010092	POLR1A	100	93.035	Equus_caballus
ENSPTRG00000012147	POLR1A	100	91.802	ENSECAG00000030510	-	100	93.035	Equus_caballus
ENSPTRG00000012147	POLR1A	100	91.802	ENSECAG00000036306	-	100	93.035	Equus_caballus
ENSPTRG00000012147	POLR1A	81	95.745	ENSEEUG00000000676	POLR1A	85	95.556	Erinaceus_europaeus
ENSPTRG00000012147	POLR1A	100	66.744	ENSELUG00000012769	polr1a	99	66.551	Esox_lucius
ENSPTRG00000012147	POLR1A	100	91.744	ENSFCAG00000008966	POLR1A	100	91.105	Felis_catus
ENSPTRG00000012147	POLR1A	99	71.227	ENSFALG00000010082	POLR1A	99	70.550	Ficedula_albicollis
ENSPTRG00000012147	POLR1A	100	88.328	ENSFDAG00000013726	POLR1A	100	87.863	Fukomys_damarensis
ENSPTRG00000012147	POLR1A	100	61.637	ENSFHEG00000005996	polr1a	100	61.410	Fundulus_heteroclitus
ENSPTRG00000012147	POLR1A	100	60.256	ENSGMOG00000002230	polr1a	100	60.046	Gadus_morhua
ENSPTRG00000012147	POLR1A	90	69.571	ENSGALG00000038160	-	99	68.902	Gallus_gallus
ENSPTRG00000012147	POLR1A	100	65.043	ENSGAFG00000015266	polr1a	100	64.641	Gambusia_affinis
ENSPTRG00000012147	POLR1A	100	64.916	ENSGACG00000018791	polr1a	100	64.916	Gasterosteus_aculeatus
ENSPTRG00000012147	POLR1A	89	75.521	ENSGAGG00000004984	-	96	81.163	Gopherus_agassizii
ENSPTRG00000012147	POLR1A	100	98.895	ENSGGOG00000001788	POLR1A	100	98.895	Gorilla_gorilla
ENSPTRG00000012147	POLR1A	90	64.019	ENSHBUG00000020021	polr1a	99	64.217	Haplochromis_burtoni
ENSPTRG00000012147	POLR1A	100	88.095	ENSHGLG00000006334	POLR1A	100	88.328	Heterocephalus_glaber_female
ENSPTRG00000012147	POLR1A	100	87.840	ENSHGLG00100006614	POLR1A	100	88.072	Heterocephalus_glaber_male
ENSPTRG00000012147	POLR1A	100	62.644	ENSHCOG00000003345	polr1a	100	62.486	Hippocampus_comes
ENSPTRG00000012147	POLR1A	100	66.165	ENSIPUG00000013174	polr1a	100	65.438	Ictalurus_punctatus
ENSPTRG00000012147	POLR1A	99	87.260	ENSSTOG00000012580	POLR1A	99	86.736	Ictidomys_tridecemlineatus
ENSPTRG00000012147	POLR1A	100	86.841	ENSJJAG00000013113	Polr1a	100	87.014	Jaculus_jaculus
ENSPTRG00000012147	POLR1A	100	65.255	ENSKMAG00000007399	polr1a	100	65.389	Kryptolebias_marmoratus
ENSPTRG00000012147	POLR1A	95	68.392	ENSLBEG00000015401	polr1a	99	68.198	Labrus_bergylta
ENSPTRG00000012147	POLR1A	53	76.605	ENSLACG00000003218	polr1a	100	76.605	Latimeria_chalumnae
ENSPTRG00000012147	POLR1A	100	70.237	ENSLOCG00000010881	polr1a	100	70.173	Lepisosteus_oculatus
ENSPTRG00000012147	POLR1A	100	89.410	ENSLAFG00000014948	POLR1A	100	89.468	Loxodonta_africana
ENSPTRG00000012147	POLR1A	100	97.326	ENSMFAG00000046097	POLR1A	100	97.326	Macaca_fascicularis
ENSPTRG00000012147	POLR1A	100	97.209	ENSMMUG00000015815	POLR1A	100	97.209	Macaca_mulatta
ENSPTRG00000012147	POLR1A	100	97.267	ENSMNEG00000043313	POLR1A	100	97.267	Macaca_nemestrina
ENSPTRG00000012147	POLR1A	100	96.860	ENSMLEG00000042428	POLR1A	100	96.860	Mandrillus_leucophaeus
ENSPTRG00000012147	POLR1A	100	65.476	ENSMAMG00000016565	polr1a	100	65.873	Mastacembelus_armatus
ENSPTRG00000012147	POLR1A	100	65.759	ENSMZEG00005004915	polr1a	100	65.605	Maylandia_zebra
ENSPTRG00000012147	POLR1A	99	69.449	ENSMGAG00000013111	POLR1A	99	68.786	Meleagris_gallopavo
ENSPTRG00000012147	POLR1A	92	87.113	ENSMAUG00000008497	Polr1a	100	86.924	Mesocricetus_auratus
ENSPTRG00000012147	POLR1A	100	92.156	ENSMICG00000000757	POLR1A	100	91.865	Microcebus_murinus
ENSPTRG00000012147	POLR1A	100	86.682	ENSMOCG00000000122	Polr1a	100	87.087	Microtus_ochrogaster
ENSPTRG00000012147	POLR1A	100	65.215	ENSMMOG00000010216	polr1a	100	65.273	Mola_mola
ENSPTRG00000012147	POLR1A	100	75.303	ENSMODG00000009335	POLR1A	100	74.885	Monodelphis_domestica
ENSPTRG00000012147	POLR1A	100	65.972	ENSMALG00000013363	polr1a	100	65.152	Monopterus_albus
ENSPTRG00000012147	POLR1A	100	85.698	MGP_CAROLIEiJ_G0028494	Polr1a	100	85.640	Mus_caroli
ENSPTRG00000012147	POLR1A	100	86.045	ENSMUSG00000049553	Polr1a	100	85.987	Mus_musculus
ENSPTRG00000012147	POLR1A	100	86.161	MGP_PahariEiJ_G0022230	Polr1a	100	86.103	Mus_pahari
ENSPTRG00000012147	POLR1A	100	85.080	MGP_SPRETEiJ_G0029499	Polr1a	100	84.909	Mus_spretus
ENSPTRG00000012147	POLR1A	100	90.465	ENSMPUG00000009135	POLR1A	100	90.465	Mustela_putorius_furo
ENSPTRG00000012147	POLR1A	100	89.532	ENSMLUG00000015723	POLR1A	100	89.242	Myotis_lucifugus
ENSPTRG00000012147	POLR1A	100	88.021	ENSNGAG00000017907	Polr1a	100	87.847	Nannospalax_galili
ENSPTRG00000012147	POLR1A	100	65.817	ENSNBRG00000000519	polr1a	100	65.721	Neolamprologus_brichardi
ENSPTRG00000012147	POLR1A	100	95.833	ENSNLEG00000002264	POLR1A	100	95.833	Nomascus_leucogenys
ENSPTRG00000012147	POLR1A	75	93.701	ENSMEUG00000011665	-	75	93.701	Notamacropus_eugenii
ENSPTRG00000012147	POLR1A	99	82.363	ENSOPRG00000008269	POLR1A	100	81.775	Ochotona_princeps
ENSPTRG00000012147	POLR1A	100	88.966	ENSODEG00000003542	POLR1A	100	88.792	Octodon_degus
ENSPTRG00000012147	POLR1A	100	65.895	ENSONIG00000015895	polr1a	100	65.953	Oreochromis_niloticus
ENSPTRG00000012147	POLR1A	100	90.529	ENSOCUG00000010138	POLR1A	100	90.529	Oryctolagus_cuniculus
ENSPTRG00000012147	POLR1A	100	64.540	ENSORLG00000008753	polr1a	99	63.924	Oryzias_latipes
ENSPTRG00000012147	POLR1A	100	63.657	ENSORLG00020020726	polr1a	99	63.463	Oryzias_latipes_hni
ENSPTRG00000012147	POLR1A	96	74.468	ENSORLG00015016071	polr1a	99	74.444	Oryzias_latipes_hsok
ENSPTRG00000012147	POLR1A	100	90.930	ENSOGAG00000004031	POLR1A	100	90.930	Otolemur_garnettii
ENSPTRG00000012147	POLR1A	100	89.669	ENSOARG00000020601	POLR1A	100	89.669	Ovis_aries
ENSPTRG00000012147	POLR1A	100	99.593	ENSPPAG00000042450	POLR1A	100	99.593	Pan_paniscus
ENSPTRG00000012147	POLR1A	100	91.744	ENSPPRG00000006702	POLR1A	100	91.163	Panthera_pardus
ENSPTRG00000012147	POLR1A	100	91.194	ENSPTIG00000018783	POLR1A	100	90.614	Panthera_tigris_altaica
ENSPTRG00000012147	POLR1A	100	97.267	ENSPANG00000025908	POLR1A	100	97.267	Papio_anubis
ENSPTRG00000012147	POLR1A	94	76.389	ENSPKIG00000005468	polr1a	99	76.389	Paramormyrops_kingsleyae
ENSPTRG00000012147	POLR1A	63	71.273	ENSPSIG00000009321	-	99	71.154	Pelodiscus_sinensis
ENSPTRG00000012147	POLR1A	54	68.021	ENSPMGG00000009718	polr1a	95	68.021	Periophthalmus_magnuspinnatus
ENSPTRG00000012147	POLR1A	100	87.724	ENSPEMG00000022224	Polr1a	100	87.782	Peromyscus_maniculatus_bairdii
ENSPTRG00000012147	POLR1A	95	78.858	ENSPCIG00000004222	POLR1A	99	78.237	Phascolarctos_cinereus
ENSPTRG00000012147	POLR1A	100	65.411	ENSPFOG00000005025	polr1a	100	64.890	Poecilia_formosa
ENSPTRG00000012147	POLR1A	100	65.585	ENSPLAG00000021389	polr1a	100	65.064	Poecilia_latipinna
ENSPTRG00000012147	POLR1A	100	63.615	ENSPMEG00000006463	polr1a	100	63.405	Poecilia_mexicana
ENSPTRG00000012147	POLR1A	100	65.527	ENSPREG00000002389	polr1a	100	64.968	Poecilia_reticulata
ENSPTRG00000012147	POLR1A	100	97.151	ENSPPYG00000012217	POLR1A	100	97.151	Pongo_abelii
ENSPTRG00000012147	POLR1A	92	96.000	ENSPCAG00000011582	POLR1A	92	96.000	Procavia_capensis
ENSPTRG00000012147	POLR1A	100	92.214	ENSPCOG00000026987	POLR1A	100	91.981	Propithecus_coquereli
ENSPTRG00000012147	POLR1A	95	91.912	ENSPVAG00000012674	POLR1A	95	91.166	Pteropus_vampyrus
ENSPTRG00000012147	POLR1A	100	65.759	ENSPNYG00000000026	polr1a	100	65.605	Pundamilia_nyererei
ENSPTRG00000012147	POLR1A	100	67.071	ENSPNAG00000019223	polr1a	99	68.626	Pygocentrus_nattereri
ENSPTRG00000012147	POLR1A	100	87.435	ENSRNOG00000009545	Polr1a	100	87.145	Rattus_norvegicus
ENSPTRG00000012147	POLR1A	100	96.570	ENSRBIG00000028335	POLR1A	100	96.570	Rhinopithecus_bieti
ENSPTRG00000012147	POLR1A	100	96.512	ENSRROG00000031473	POLR1A	100	96.512	Rhinopithecus_roxellana
ENSPTRG00000012147	POLR1A	99	36.892	YOR341W	RPA190	99	36.948	Saccharomyces_cerevisiae
ENSPTRG00000012147	POLR1A	100	93.895	ENSSBOG00000030262	POLR1A	100	93.895	Saimiri_boliviensis_boliviensis
ENSPTRG00000012147	POLR1A	100	73.948	ENSSHAG00000014739	POLR1A	100	73.948	Sarcophilus_harrisii
ENSPTRG00000012147	POLR1A	100	67.514	ENSSFOG00015019716	polr1a	100	67.514	Scleropages_formosus
ENSPTRG00000012147	POLR1A	100	66.243	ENSSMAG00000014342	polr1a	100	66.108	Scophthalmus_maximus
ENSPTRG00000012147	POLR1A	100	66.705	ENSSDUG00000014631	polr1a	100	66.647	Seriola_dumerili
ENSPTRG00000012147	POLR1A	100	64.988	ENSSLDG00000024095	polr1a	97	73.423	Seriola_lalandi_dorsalis
ENSPTRG00000012147	POLR1A	75	97.872	ENSSARG00000003136	-	76	97.872	Sorex_araneus
ENSPTRG00000012147	POLR1A	100	70.973	ENSSPUG00000004215	POLR1A	98	79.487	Sphenodon_punctatus
ENSPTRG00000012147	POLR1A	63	71.769	ENSSPAG00000016341	polr1a	94	71.769	Stegastes_partitus
ENSPTRG00000012147	POLR1A	83	90.820	ENSSSCG00000008226	POLR1A	99	90.794	Sus_scrofa
ENSPTRG00000012147	POLR1A	99	70.294	ENSTGUG00000010704	POLR1A	100	69.718	Taeniopygia_guttata
ENSPTRG00000012147	POLR1A	100	64.430	ENSTRUG00000002210	polr1a	99	63.652	Takifugu_rubripes
ENSPTRG00000012147	POLR1A	100	60.482	ENSTNIG00000010116	polr1a	100	60.345	Tetraodon_nigroviridis
ENSPTRG00000012147	POLR1A	74	96.903	ENSTBEG00000008646	POLR1A	74	96.903	Tupaia_belangeri
ENSPTRG00000012147	POLR1A	100	86.636	ENSTTRG00000008597	POLR1A	100	86.519	Tursiops_truncatus
ENSPTRG00000012147	POLR1A	69	91.209	ENSUAMG00000012158	-	94	90.786	Ursus_americanus
ENSPTRG00000012147	POLR1A	100	90.000	ENSUMAG00000006700	POLR1A	100	89.942	Ursus_maritimus
ENSPTRG00000012147	POLR1A	100	90.482	ENSVVUG00000001245	POLR1A	100	89.901	Vulpes_vulpes
ENSPTRG00000012147	POLR1A	100	67.010	ENSXETG00000001952	polr1a	100	69.258	Xenopus_tropicalis
ENSPTRG00000012147	POLR1A	100	65.645	ENSXMAG00000004032	polr1a	100	65.080	Xiphophorus_maculatus