EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPTRG00000012494 (Gene tree)
Gene ID: 459631
Gene Symbol: R3HDM1
Alias: -
Full Name: R3H domain containing 1
Gene Type: protein_coding
Species: Pan_troglodytes
Status: putative
Strand: Plus strand
Length: 139626 bases
Position: chr2B:25225682-25365307
Accession: 2794
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPTRP00000062747	R3H	PF01424.22	2.9e-11	1	1
ENSPTRP00000091908	R3H	PF01424.22	3.4e-11	1	1
ENSPTRP00000021375	R3H	PF01424.22	3.5e-11	1	1
ENSPTRP00000073566	R3H	PF01424.22	3.5e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPTRT00000023182	-	4786	XM_003309262	ENSPTRP00000021375	1101 (aa)	XP_003309310	H2QIR7
ENSPTRT00000082058	-	3309	XM_016949732	ENSPTRP00000073566	1102 (aa)	-	A0A2I3S9Q9
ENSPTRT00000111191	-	1281	-	ENSPTRP00000093806	426 (aa)	-	A0A2I3TX22
ENSPTRT00000076966	-	3141	XM_016949738	ENSPTRP00000091908	1046 (aa)	-	A0A2I3TRR3
ENSPTRT00000100585	-	1368	-	ENSPTRP00000084138	455 (aa)	-	A0A2I3T4H9
ENSPTRT00000098595	-	4402	XM_001154157	ENSPTRP00000062747	973 (aa)	XP_001154157	A0A2J8PNZ1

Gene Model

Click here to download ENSPTRG00000012494's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPTRG00000012494's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPTRG00000012494	R3HDM1	67	51.671	ENSPTRG00000014736	ARPP21	91	51.285
ENSPTRG00000012494	R3HDM1	99	49.802	ENSPTRG00000046457	R3HDM2	95	57.664

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPTRG00000012494	R3HDM1	100	99.818	ENSG00000048991	R3HDM1	100	99.818	Homo_sapiens
ENSPTRG00000012494	R3HDM1	88	63.467	ENSAPOG00000020850	r3hdm1	92	63.467	Acanthochromis_polyacanthus
ENSPTRG00000012494	R3HDM1	100	94.751	ENSAMEG00000014886	R3HDM1	100	94.932	Ailuropoda_melanoleuca
ENSPTRG00000012494	R3HDM1	87	58.088	ENSAOCG00000005192	r3hdm1	95	58.088	Amphiprion_ocellaris
ENSPTRG00000012494	R3HDM1	87	63.200	ENSAPEG00000016108	r3hdm1	95	63.200	Amphiprion_percula
ENSPTRG00000012494	R3HDM1	87	63.441	ENSATEG00000000232	r3hdm1	92	54.894	Anabas_testudineus
ENSPTRG00000012494	R3HDM1	100	78.449	ENSAPLG00000015231	R3HDM1	100	78.720	Anas_platyrhynchos
ENSPTRG00000012494	R3HDM1	100	76.157	ENSACAG00000001676	R3HDM1	100	76.681	Anolis_carolinensis
ENSPTRG00000012494	R3HDM1	100	98.279	ENSANAG00000035334	R3HDM1	100	98.279	Aotus_nancymaae
ENSPTRG00000012494	R3HDM1	87	62.133	ENSACLG00000027282	r3hdm1	94	62.133	Astatotilapia_calliptera
ENSPTRG00000012494	R3HDM1	88	74.684	ENSAMXG00000003536	r3hdm1	89	74.603	Astyanax_mexicanus
ENSPTRG00000012494	R3HDM1	60	40.374	ENSAMXG00000020587	arpp21	63	47.500	Astyanax_mexicanus
ENSPTRG00000012494	R3HDM1	89	78.571	ENSAMXG00000012861	R3HDM1	100	60.808	Astyanax_mexicanus
ENSPTRG00000012494	R3HDM1	100	90.957	ENSBTAG00000013302	R3HDM1	100	91.220	Bos_taurus
ENSPTRG00000012494	R3HDM1	100	97.731	ENSCJAG00000011718	R3HDM1	100	97.731	Callithrix_jacchus
ENSPTRG00000012494	R3HDM1	100	94.932	ENSCAFG00000005075	R3HDM1	100	95.113	Canis_familiaris
ENSPTRG00000012494	R3HDM1	100	95.018	ENSCAFG00020016119	R3HDM1	99	96.310	Canis_lupus_dingo
ENSPTRG00000012494	R3HDM1	100	93.575	ENSCHIG00000020851	R3HDM1	100	93.846	Capra_hircus
ENSPTRG00000012494	R3HDM1	100	89.543	ENSCPOG00000012784	R3HDM1	100	94.304	Cavia_porcellus
ENSPTRG00000012494	R3HDM1	100	97.992	ENSCCAG00000027199	R3HDM1	100	97.992	Cebus_capucinus
ENSPTRG00000012494	R3HDM1	100	99.262	ENSCATG00000023642	R3HDM1	100	98.639	Cercocebus_atys
ENSPTRG00000012494	R3HDM1	100	89.446	ENSCLAG00000007962	R3HDM1	95	95.887	Chinchilla_lanigera
ENSPTRG00000012494	R3HDM1	100	95.511	ENSCSAG00000016356	R3HDM1	100	95.511	Chlorocebus_sabaeus
ENSPTRG00000012494	R3HDM1	80	93.939	ENSCHOG00000013638	R3HDM1	81	94.118	Choloepus_hoffmanni
ENSPTRG00000012494	R3HDM1	91	91.144	ENSCPBG00000009645	R3HDM1	100	91.144	Chrysemys_picta_bellii
ENSPTRG00000012494	R3HDM1	100	98.639	ENSCANG00000034748	R3HDM1	100	98.639	Colobus_angolensis_palliatus
ENSPTRG00000012494	R3HDM1	99	87.654	ENSCGRG00001012357	R3hdm1	97	88.801	Cricetulus_griseus_chok1gshd
ENSPTRG00000012494	R3HDM1	99	91.545	ENSCGRG00000012080	R3hdm1	100	91.030	Cricetulus_griseus_crigri
ENSPTRG00000012494	R3HDM1	81	65.246	ENSCSEG00000008944	r3hdm1	82	65.246	Cynoglossus_semilaevis
ENSPTRG00000012494	R3HDM1	87	61.067	ENSCVAG00000007582	r3hdm1	91	61.067	Cyprinodon_variegatus
ENSPTRG00000012494	R3HDM1	64	35.781	ENSDARG00000061081	arpp21	89	35.830	Danio_rerio
ENSPTRG00000012494	R3HDM1	100	91.234	ENSDNOG00000000771	R3HDM1	100	90.819	Dasypus_novemcinctus
ENSPTRG00000012494	R3HDM1	100	83.062	ENSETEG00000013606	R3HDM1	100	83.696	Echinops_telfairi
ENSPTRG00000012494	R3HDM1	66	41.270	ENSEBUG00000014746	arpp21	97	42.965	Eptatretus_burgeri
ENSPTRG00000012494	R3HDM1	100	98.066	ENSEASG00005007392	R3HDM1	100	94.746	Equus_asinus_asinus
ENSPTRG00000012494	R3HDM1	99	98.066	ENSECAG00000019114	R3HDM1	100	95.018	Equus_caballus
ENSPTRG00000012494	R3HDM1	91	87.061	ENSEEUG00000012589	R3HDM1	91	87.061	Erinaceus_europaeus
ENSPTRG00000012494	R3HDM1	92	51.936	ENSELUG00000014413	r3hdm1	96	53.208	Esox_lucius
ENSPTRG00000012494	R3HDM1	92	75.610	ENSELUG00000004909	R3HDM1	99	56.244	Esox_lucius
ENSPTRG00000012494	R3HDM1	100	97.790	ENSFCAG00000027113	R3HDM1	100	94.661	Felis_catus
ENSPTRG00000012494	R3HDM1	75	72.706	ENSFALG00000013731	R3HDM1	93	66.846	Ficedula_albicollis
ENSPTRG00000012494	R3HDM1	100	89.279	ENSFDAG00000016478	R3HDM1	95	95.671	Fukomys_damarensis
ENSPTRG00000012494	R3HDM1	87	57.108	ENSFHEG00000018713	r3hdm1	91	61.867	Fundulus_heteroclitus
ENSPTRG00000012494	R3HDM1	60	64.783	ENSGMOG00000006042	-	74	65.217	Gadus_morhua
ENSPTRG00000012494	R3HDM1	94	77.297	ENSGALG00000012246	R3HDM1	99	85.902	Gallus_gallus
ENSPTRG00000012494	R3HDM1	87	61.333	ENSGAFG00000006203	r3hdm1	95	61.333	Gambusia_affinis
ENSPTRG00000012494	R3HDM1	86	68.269	ENSGACG00000014925	r3hdm1	92	68.269	Gasterosteus_aculeatus
ENSPTRG00000012494	R3HDM1	99	83.662	ENSGAGG00000007840	R3HDM1	100	78.320	Gopherus_agassizii
ENSPTRG00000012494	R3HDM1	100	99.235	ENSGGOG00000008156	R3HDM1	100	99.235	Gorilla_gorilla
ENSPTRG00000012494	R3HDM1	100	89.543	ENSHGLG00000015718	R3HDM1	95	95.887	Heterocephalus_glaber_female
ENSPTRG00000012494	R3HDM1	100	68.959	ENSHGLG00100015374	-	100	73.401	Heterocephalus_glaber_male
ENSPTRG00000012494	R3HDM1	100	89.279	ENSHGLG00100003184	-	95	95.887	Heterocephalus_glaber_male
ENSPTRG00000012494	R3HDM1	87	59.517	ENSHCOG00000013366	r3hdm1	91	60.322	Hippocampus_comes
ENSPTRG00000012494	R3HDM1	82	73.668	ENSIPUG00000001676	R3HDM1	98	58.613	Ictalurus_punctatus
ENSPTRG00000012494	R3HDM1	53	37.699	ENSIPUG00000020552	arpp21	74	38.053	Ictalurus_punctatus
ENSPTRG00000012494	R3HDM1	85	67.674	ENSIPUG00000013629	r3hdm1	95	69.497	Ictalurus_punctatus
ENSPTRG00000012494	R3HDM1	100	94.651	ENSSTOG00000007572	R3HDM1	100	96.502	Ictidomys_tridecemlineatus
ENSPTRG00000012494	R3HDM1	96	70.688	ENSLACG00000005334	R3HDM1	100	70.988	Latimeria_chalumnae
ENSPTRG00000012494	R3HDM1	100	66.903	ENSLOCG00000001641	r3hdm1	100	66.607	Lepisosteus_oculatus
ENSPTRG00000012494	R3HDM1	100	90.773	ENSLAFG00000009065	R3HDM1	100	90.949	Loxodonta_africana
ENSPTRG00000012494	R3HDM1	100	98.820	ENSMFAG00000030331	R3HDM1	100	100.000	Macaca_fascicularis
ENSPTRG00000012494	R3HDM1	100	98.819	ENSMMUG00000009844	R3HDM1	100	98.819	Macaca_mulatta
ENSPTRG00000012494	R3HDM1	100	98.728	ENSMNEG00000027793	R3HDM1	100	100.000	Macaca_nemestrina
ENSPTRG00000012494	R3HDM1	100	98.911	ENSMLEG00000043189	R3HDM1	100	98.911	Mandrillus_leucophaeus
ENSPTRG00000012494	R3HDM1	87	62.466	ENSMAMG00000004532	r3hdm1	91	57.635	Mastacembelus_armatus
ENSPTRG00000012494	R3HDM1	87	62.133	ENSMZEG00005003157	r3hdm1	95	57.108	Maylandia_zebra
ENSPTRG00000012494	R3HDM1	100	77.998	ENSMGAG00000012461	R3HDM1	100	78.179	Meleagris_gallopavo
ENSPTRG00000012494	R3HDM1	100	87.368	ENSMAUG00000010315	R3hdm1	100	91.362	Mesocricetus_auratus
ENSPTRG00000012494	R3HDM1	100	94.101	ENSMICG00000005900	-	100	94.101	Microcebus_murinus
ENSPTRG00000012494	R3HDM1	95	91.901	ENSMICG00000042655	-	94	98.366	Microcebus_murinus
ENSPTRG00000012494	R3HDM1	89	78.469	ENSMODG00000000923	R3HDM1	97	77.609	Monodelphis_domestica
ENSPTRG00000012494	R3HDM1	99	58.065	ENSMALG00000009000	r3hdm1	91	58.065	Monopterus_albus
ENSPTRG00000012494	R3HDM1	100	86.555	MGP_CAROLIEiJ_G0014543	R3hdm1	100	94.561	Mus_caroli
ENSPTRG00000012494	R3HDM1	100	86.555	ENSMUSG00000056211	R3hdm1	100	94.561	Mus_musculus
ENSPTRG00000012494	R3HDM1	100	86.467	MGP_PahariEiJ_G0027779	R3hdm1	100	94.561	Mus_pahari
ENSPTRG00000012494	R3HDM1	100	86.731	MGP_SPRETEiJ_G0015350	R3hdm1	100	94.561	Mus_spretus
ENSPTRG00000012494	R3HDM1	100	94.389	ENSMPUG00000002412	R3HDM1	100	94.661	Mustela_putorius_furo
ENSPTRG00000012494	R3HDM1	100	93.219	ENSMLUG00000013824	R3HDM1	100	93.219	Myotis_lucifugus
ENSPTRG00000012494	R3HDM1	100	99.235	ENSNLEG00000008622	R3HDM1	100	99.235	Nomascus_leucogenys
ENSPTRG00000012494	R3HDM1	89	72.737	ENSMEUG00000011784	R3HDM1	100	72.866	Notamacropus_eugenii
ENSPTRG00000012494	R3HDM1	100	88.401	ENSODEG00000008607	R3HDM1	95	96.320	Octodon_degus
ENSPTRG00000012494	R3HDM1	94	66.873	ENSONIG00000012017	r3hdm1	91	66.873	Oreochromis_niloticus
ENSPTRG00000012494	R3HDM1	100	81.278	ENSOANG00000007987	R3HDM1	100	81.548	Ornithorhynchus_anatinus
ENSPTRG00000012494	R3HDM1	89	93.401	ENSOCUG00000017366	R3HDM1	98	93.604	Oryctolagus_cuniculus
ENSPTRG00000012494	R3HDM1	87	60.638	ENSORLG00000004297	r3hdm1	90	60.638	Oryzias_latipes
ENSPTRG00000012494	R3HDM1	89	61.067	ENSORLG00015017355	r3hdm1	91	61.067	Oryzias_latipes_hsok
ENSPTRG00000012494	R3HDM1	100	92.941	ENSOGAG00000003136	R3HDM1	100	93.032	Otolemur_garnettii
ENSPTRG00000012494	R3HDM1	100	93.394	ENSOARG00000010788	R3HDM1	100	93.665	Ovis_aries
ENSPTRG00000012494	R3HDM1	100	100.000	ENSPPAG00000027858	R3HDM1	100	100.000	Pan_paniscus
ENSPTRG00000012494	R3HDM1	100	94.365	ENSPPRG00000002626	R3HDM1	100	94.467	Panthera_pardus
ENSPTRG00000012494	R3HDM1	100	94.365	ENSPTIG00000016581	R3HDM1	100	94.467	Panthera_tigris_altaica
ENSPTRG00000012494	R3HDM1	100	98.911	ENSPANG00000026448	R3HDM1	100	98.911	Papio_anubis
ENSPTRG00000012494	R3HDM1	94	76.358	ENSPKIG00000004328	r3hdm1	91	76.677	Paramormyrops_kingsleyae
ENSPTRG00000012494	R3HDM1	100	78.430	ENSPSIG00000012915	R3HDM1	100	78.791	Pelodiscus_sinensis
ENSPTRG00000012494	R3HDM1	100	87.786	ENSPEMG00000015187	R3hdm1	100	91.030	Peromyscus_maniculatus_bairdii
ENSPTRG00000012494	R3HDM1	91	55.053	ENSPMAG00000003369	-	99	43.009	Petromyzon_marinus
ENSPTRG00000012494	R3HDM1	100	90.659	ENSPCIG00000002491	R3HDM1	100	84.083	Phascolarctos_cinereus
ENSPTRG00000012494	R3HDM1	87	55.474	ENSPFOG00000015036	r3hdm1	94	55.474	Poecilia_formosa
ENSPTRG00000012494	R3HDM1	87	59.947	ENSPLAG00000018042	r3hdm1	91	59.947	Poecilia_latipinna
ENSPTRG00000012494	R3HDM1	87	59.947	ENSPMEG00000023947	r3hdm1	91	59.947	Poecilia_mexicana
ENSPTRG00000012494	R3HDM1	81	68.608	ENSPREG00000007902	r3hdm1	94	60.000	Poecilia_reticulata
ENSPTRG00000012494	R3HDM1	100	98.369	ENSPPYG00000012815	R3HDM1	100	98.185	Pongo_abelii
ENSPTRG00000012494	R3HDM1	100	82.156	ENSPCAG00000006208	R3HDM1	100	81.612	Procavia_capensis
ENSPTRG00000012494	R3HDM1	100	93.669	ENSPCOG00000012698	R3HDM1	100	93.821	Propithecus_coquereli
ENSPTRG00000012494	R3HDM1	100	86.219	ENSPVAG00000006098	R3HDM1	100	86.219	Pteropus_vampyrus
ENSPTRG00000012494	R3HDM1	88	76.603	ENSPNAG00000005436	R3HDM1	99	76.527	Pygocentrus_nattereri
ENSPTRG00000012494	R3HDM1	94	74.522	ENSPNAG00000013952	r3hdm1	95	58.280	Pygocentrus_nattereri
ENSPTRG00000012494	R3HDM1	67	38.710	ENSPNAG00000004162	arpp21	64	45.051	Pygocentrus_nattereri
ENSPTRG00000012494	R3HDM1	100	86.292	ENSRNOG00000004099	R3hdm1	100	86.907	Rattus_norvegicus
ENSPTRG00000012494	R3HDM1	100	98.369	ENSRBIG00000033317	R3HDM1	100	99.631	Rhinopithecus_bieti
ENSPTRG00000012494	R3HDM1	100	99.448	ENSRROG00000034534	R3HDM1	100	98.819	Rhinopithecus_roxellana
ENSPTRG00000012494	R3HDM1	100	97.459	ENSSBOG00000020389	R3HDM1	100	97.459	Saimiri_boliviensis_boliviensis
ENSPTRG00000012494	R3HDM1	100	83.921	ENSSHAG00000016999	R3HDM1	100	84.101	Sarcophilus_harrisii
ENSPTRG00000012494	R3HDM1	89	78.193	ENSSFOG00015014134	r3hdm1	100	70.631	Scleropages_formosus
ENSPTRG00000012494	R3HDM1	100	56.738	ENSSFOG00015019851	-	100	56.472	Scleropages_formosus
ENSPTRG00000012494	R3HDM1	99	60.541	ENSSMAG00000001669	r3hdm1	99	45.203	Scophthalmus_maximus
ENSPTRG00000012494	R3HDM1	87	62.766	ENSSDUG00000010749	r3hdm1	91	62.766	Seriola_dumerili
ENSPTRG00000012494	R3HDM1	92	69.231	ENSSLDG00000004499	r3hdm1	91	57.457	Seriola_lalandi_dorsalis
ENSPTRG00000012494	R3HDM1	73	79.783	ENSSARG00000000352	-	69	82.724	Sorex_araneus
ENSPTRG00000012494	R3HDM1	100	80.072	ENSSPUG00000004167	R3HDM1	100	80.162	Sphenodon_punctatus
ENSPTRG00000012494	R3HDM1	87	63.467	ENSSPAG00000004648	r3hdm1	91	63.467	Stegastes_partitus
ENSPTRG00000012494	R3HDM1	100	97.238	ENSSSCG00000015692	R3HDM1	100	94.932	Sus_scrofa
ENSPTRG00000012494	R3HDM1	100	73.670	ENSTGUG00000011750	R3HDM1	100	73.399	Taeniopygia_guttata
ENSPTRG00000012494	R3HDM1	81	67.532	ENSTRUG00000011654	r3hdm1	91	57.841	Takifugu_rubripes
ENSPTRG00000012494	R3HDM1	82	67.732	ENSTNIG00000010362	r3hdm1	99	45.884	Tetraodon_nigroviridis
ENSPTRG00000012494	R3HDM1	100	87.228	ENSTTRG00000003935	R3HDM1	100	87.500	Tursiops_truncatus
ENSPTRG00000012494	R3HDM1	70	96.272	ENSUAMG00000024806	R3HDM1	93	96.272	Ursus_americanus
ENSPTRG00000012494	R3HDM1	100	93.955	ENSUMAG00000005552	R3HDM1	100	94.057	Ursus_maritimus
ENSPTRG00000012494	R3HDM1	97	94.485	ENSVPAG00000007333	R3HDM1	93	91.228	Vicugna_pacos
ENSPTRG00000012494	R3HDM1	100	97.790	ENSVVUG00000006457	R3HDM1	100	92.707	Vulpes_vulpes
ENSPTRG00000012494	R3HDM1	90	67.337	ENSXETG00000019330	r3hdm1	100	67.337	Xenopus_tropicalis
ENSPTRG00000012494	R3HDM1	71	49.936	ENSXCOG00000017448	r3hdm1	94	49.806	Xiphophorus_couchianus
ENSPTRG00000012494	R3HDM1	81	68.285	ENSXMAG00000007885	r3hdm1	88	61.867	Xiphophorus_maculatus